BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480488 Length=1442 Score E Sequences producing significant alignments: (Bits) Value AT2G19810.1 | Symbols: | CCCH-type zinc finger family protein ... 1666 0.0 AT4G29190.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 654 0.0 > AT2G19810.1 | Symbols: | CCCH-type zinc finger family protein | chr2:8550313-8551858 FORWARD LENGTH=1546 Length=1546 Score = 1666 bits (902), Expect = 0.0 Identities = 1043/1110 (94%), Gaps = 14/1110 (1%) Strand=Plus/Plus Query 67 TaaaaaaaTGATGATCGGAGAATCTCATCGTGGTTTTAATCCTACGGTTCATATTCCAT- 125 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 100 TAAAAAAATGATGATCGGAGAATCTCATCGTGGTTTTAATCCAACGGTTCATATTCC-TC 158 Query 126 CATGGCCACTGTCTGAAGATTTAACGGCGTCAGATGTTTACGGAAGTCCAGACGGAGGAA 185 |||||||||| ||||||||| |||||| ||| ||| |||||||||||||||||||||||| Sbjct 159 CATGGCCACTTTCTGAAGATCTAACGGTGTCTGATATTTACGGAAGTCCAGACGGAGGAA 218 Query 186 GTAGTATGATGGAAGCTTTGGCTGCGTTACAACGTTATCTTCCGTCTAACGAACCGGATC 245 |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 219 GTAGTATGATGGAAGCTTTGGCTGAGTTACAACGTTATCTTCCGTCAAACGAACCGGATC 278 Query 246 CGGATTCTGATCCGGATCTCTCGGGTCCGGATTCACCCATCGATGCTTATTCGTGTGATC 305 ||||||| ||||||||||||||||||||||||||||| |||||||||||| | || |||| Sbjct 279 CGGATTCAGATCCGGATCTCTCGGGTCCGGATTCACCAATCGATGCTTATACATGCGATC 338 Query 306 ATTTTCGGATGTATGAGTTTAAAGTGAGACGTTGCGCTCGTGGTCGGAGTCATGATTGGA 365 |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 339 ATTTTCGGATGTATGAGTTTAAAGTGAGACGTTGTGCTCGTGGCCGGAGCCATGATTGGA 398 Query 366 CGGAGTGTCCTTATGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAGTTTC 425 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 399 CGGAGTGTCCTTACGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAGTTTC 458 Query 426 ATTATTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTGGTTGCAAGAGAGGAGACGCGT 485 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 459 ATTACTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTTGTTGCAAGAGAGGAGACGCAT 518 Query 486 GTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCATCCGGCGCGTTACCGGACTCAGC 545 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 519 GTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCACCCGGCGCGTTACCGGACTCAGC 578 Query 546 CGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTCGCTCATTCGCCGGATC 605 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 579 CGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTTGCTCATTCGCCGGATC 638 Query 606 AGCTTAGGGTTTTGCCTAGTCAAAGCCCTGATCGTGTTGATTCATTCGACGGTTTGTCTC 665 || ||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| Sbjct 639 AGATTAGGGTTTTGCCTAATCAAAGCCCTGATCGTGTTGATTCGTTCGACGTTTTGTCTC 698 Query 666 C---GATTCGTAGAGCGTTTCAGTTTACGATTTCGCCGTCGTCTAACTCCCCGCCGGTGA 722 | |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| Sbjct 699 CTACGATTCGTAGAGCGTTTCAGTTTTCGATTTCTCCGTCGTCTAACTCGCCGCCGGTGA 758 Query 723 GTCCTCGAGGTGACTCGGACTCGTCGCCGTCTC-T-ACTGAGTCGTTCACTCGGATCTAA 780 |||| ||||||||||||||||||||| || || | |||||||||||||||||| ||||| Sbjct 759 GTCCACGAGGTGACTCGGACTCGTCGT-GT-TCGTTACTGAGTCGTTCACTCGGGTCTAA 816 Query 781 TTTGGGAAACGACGTCGTTGCGTCCCTGAGGAATCTGCAGCTTAGTAAAGTGAAGTCT-C 839 | |||||||||||||||||||||| || ||||||||||| |||| ||||||||||||| | Sbjct 817 TCTGGGAAACGACGTCGTTGCGTCTCTCAGGAATCTGCAACTTAATAAAGTGAAGTCTTC 876 Query 840 T-TT-CTTCGTCGTACAACAATGAAATCGGAGGATACGGATCTGGGTTCGGGTCGCCTCG 897 | || | ||||| ||||||||| ||||||||||||||||||| || |||||||||||||| Sbjct 877 TCTTTCGTCGTCATACAACAATCAAATCGGAGGATACGGATCCGGATTCGGGTCGCCTCG 936 Query 898 TGGATCGGTTTTGGGTCCTGGTTTTCGGAGCTTACCAACAACACCGACCCGACCCGGGTT 957 |||||||||||||||||||||||| || ||||||||||| |||||||||||||| || || Sbjct 937 TGGATCGGTTTTGGGTCCTGGTTTCCGTAGCTTACCAACTACACCGACCCGACCTGGTTT 996 Query 958 TATGAACATTTGGGAAAATGGTTTGGAGGAAGAACCGGCGATGGAACGGGTCGAGTCGGG 1017 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 997 TATGAACATTTGGGAGAATGGCTTGGAGGAAGAACCGGCGATGGAACGGGTCGAGTCGGG 1056 Query 1018 TCGTGAACTGCGAGCGCAGCTGTTCCAGAAGCTGAGCAAAGAGAATTGCATGGGTCGTG- 1076 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 1057 TCGTGAACTGCGAGCGCAGCTGTTCGAGAAGCTGAGCAAAGAGAATTGCATGGGTCG-GA 1115 Query 1077 TTGACCCGGATCCGGATCAGGGAGCGGGTGATGCTCCTGATGTCGGGTGGGTCTCTGACT 1136 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1116 TTGAACCGGATCCGGATCAGGGAGCGGGTGATACTCCTGATGTCGGGTGGGTCTCTGACT 1175 Query 1137 TGGTTATGTGATTTTAACCGGATTCGTAAA 1166 |||||||||||||| ||||||||||||||| Sbjct 1176 TGGTTATGTGATTTGAACCGGATTCGTAAA 1205 Score = 276 bits (149), Expect = 5e-73 Identities = 199/222 (90%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 1225 TTTATTATTTCCTAATTTCGTATAATCTCTATTTTATAATCGATGATTCCAGGGAGATTT 1284 |||||||||||||||||||||||||||||| || |||||||||||||| |||||| Sbjct 1329 TTTATTATTTCCTAATTTCGTATAATCTCTGTTCCATAATCGATGATTCGAGGGAG---- 1384 Query 1285 ATTTCTCAGTGTATAGGAGTTGCTTAGGATTTTTCATTATGATGGATTCACTAATAATGA 1344 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1385 ATTCCTCAGTGTATAGGAGTTGCTTAGGATTTTTCATTATGATGGATTCACTAATATTGA 1444 Query 1345 TATTGTTGGTTTTTGGTTTTG--ATAT-T-ATGATGTTCGATGCAAATCTCAATGTAATT 1400 ||||||||||| ||| |||| |||| | ||||||| ||||||| || |||||||||| Sbjct 1445 TATTGTTGGTTATTGTTTTTTTTATATATTATGATGTAAGATGCAAGTCGCAATGTAATT 1504 Query 1401 ATTAAATATCTAATGAATGAAATGAGGATGTAAATTATTTAT 1442 ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1505 ATTAAATATCTTATGAATGAAATGAGAATGTAAATTATTTAT 1546 Score = 52.8 bits (28), Expect = 9e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1 AAGCTTTGCCGGAGATTTAGCAAACACA 28 |||||||||||||||||||||||||||| Sbjct 12 AAGCTTTGCCGGAGATTTAGCAAACACA 39 > AT4G29190.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr4:14391938-14393373 REVERSE LENGTH=1436 Length=1436 Score = 654 bits (354), Expect = 0.0 Identities = 783/984 (80%), Gaps = 54/984 (5%) Strand=Plus/Plus Query 186 GTAGTATGATGGAAGCTTTGGCTGCGTTACAACGTTATCTT-CCGTCTAACGAACCGGAT 244 |||| ||| | ||||||||||| | ||| || |||||| || |||||||||||||||||| Sbjct 186 GTAGCATGCTTGAAGCTTTGGCGGGGTTGCAGCGTTAT-TTGCCGTCTAACGAACCGGAT 244 Query 245 CCGGATTC-TGATCCGGATCTCTCGGGTCCGGATTCACCCATCGATGCTTATTCGTGTGA 303 ||||| || | | |||||||| | ||||||||||||||| ||||||||||| || || || Sbjct 245 CCGGAGTCAT-ACCCGGATCTATTGGGTCCGGATTCACCAATCGATGCTTACTCATGCGA 303 Query 304 TCATTTTCGGATGTATGAGTTT-AAAGTGA-GACGTTGCGCTCGTGGTCGGAGTCATGAT 361 ||||| || ||||| || ||| ||||| | || | || |||||||| |||||||||||| Sbjct 304 CCATTTCCGTATGTACGA-TTTCAAAGTCAGGA-GGTGTGCTCGTGGCCGGAGTCATGAT 361 Query 362 TGGACGGAGTGTCCTTATGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAG 421 |||||||||||||| || |||||||||||||||||||||||||| | |||||||||||| Sbjct 362 TGGACGGAGTGTCCGTACGCTCATCCCGGAGAAAAAGCTCGCCGGAGAGATCCGAGGAAG 421 Query 422 TTTCATTATTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTGGTTGCAAGAGAGGAGAC 481 | ||||| || |||||||| |||||||| |||||||||||||| ||||||| ||| ||| Sbjct 422 TACCATTACTCTGGTACGGCTTGTCCTGATTTTCGTAAAGGTGGCTGCAAGAAAGGTGAC 481 Query 482 GCGTGTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCATCCGGCGCGTTACCGGACT 541 | ||||||||| ||||||||||||| ||||||||||||||||| || |||||||| ||| Sbjct 482 TCTTGTGAGTTTGCTCATGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGTACT 541 Query 542 CAGCCGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTCGCTCATTCGCCG 601 |||||||||||||||||||||||||||| ||| |||||||||| |||||||| ||| Sbjct 542 CAGCCGTGTAAAGACGGTGGTAACTGTCTCCGGAAAATTTGTTTCTTTGCTCATTCACCG 601 Query 602 GATCAGCTTAGGGTTTTGCCTAGTCAAAGCCCTGATC-GTGTTGATTCATTCGACGGTTT 660 |||||||||||| |||| | || || |||||||| | | |||||||| || |||| ||| Sbjct 602 GATCAGCTTAGGTTTTTACATACTCGGAGCCCTGA-CAGAGTTGATTCTTTTGACG-TTT 659 Query 661 -GTCTCCGATTCGT---AGAGCGTTTCAGTT-TACGATTTCGCCG-TCGTCTAACTCCCC 714 ||||||||||||| ||||| |||||| | | ||||||| ||| | ||| || || Sbjct 660 CGTCTCCGATTCGTGCTAGAGCATTTCAGCTGT-CGATTTCTCCGGTT-TCTGGTTCGCC 717 Query 715 GCCGGTGAGTCCTCGAGGTGACTCGGACTCGTCGCCG-T--CTC--T-ACTGAGTCGTTC 768 ||| ||||||| ||| ||||||||| || || ||| | ||| | ||||||||| || Sbjct 718 ACCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAGTCACTGAGTCGATC 777 Query 769 ACTCGGATCTAATTTGGGAAACGACGTCGTTGCGTCCCTGAGGAATCTGCAGCTTAGTAA 828 ||||| ||| || | ||||||||||||| | || | |||||| | ||| ||| | Sbjct 778 TCTCGGGTCTTGTTCGATAAACGACGTCGTTCCTTCGTTTAGGAATTTACAGTTTAATTC 837 Query 829 AGTGAAGTCTCTTTCTTCGTCGTACAACAATGAAATCGGAGGATACGGATCTGGGTTCGG 888 || || || |||| | ||||| | |||| | | | ||||| | ||| Sbjct 838 GGTAAAATCA-TTTC--C-TCGTA-A-CAATCCTTT---AT--T-CGGAT-T-----CGG 879 Query 889 GTCGCCTCGTGGATCGGTTTTGGGTCCTGGTTTTCGGAGCT-TACCAACAACACCGACCC 947 |||||| ||||||||| | ||||||||||| |||| | || | || ||||||||||||| Sbjct 880 GTCGCCCCGTGGATCGATCTTGGGTCCTGGGTTTCAGT-CTCTGCCTACAACACCGACCC 938 Query 948 GACCCGGGTTTATGAACATTTGGGAAAATGGTTTGGAGGAAGAACCGGCGATGGAACGGG 1007 |||| ||| | || | |||||||| ||||||||||||||||||| | ||||| || | Sbjct 939 GACCAGGGAATCTGGATATTTGGGAGTATGGTTTGGAGGAAGAACCCGTAATGGAGCGTG 998 Query 1008 TCG---AGTCGGGTCGTGAACTGCGAGCGCAGCTGTTCCAGAAGCTG-AGCAAAGAGAAT 1063 ||| ||||||||||||| || |||| || || | |||| ||| | ||| |||||| Sbjct 999 TCGTTGAGTCGGGTCGTGAGCTACGAGAAAAGATGCGCGAGAAACTGCA-CAAGGAGAAT 1057 Query 1064 TGCATGGGTCGTGTTGACCC-GGATCCGGATCAGGGAGC-GGGTGATGCTCCTGATGTCG 1121 ||||||| ||| |||| ||| ||||||||||||| | |||||| ||||||||||||| Sbjct 1058 TGCATGGATCGAGTTG-CCCAGGATCCGGATCAGA-ATTTGGGTGAGGCTCCTGATGTCG 1115 Query 1122 GGTGGGTCTCTGACTTGGTTATGT 1145 ||||||| |||||| || | |||| Sbjct 1116 GGTGGGTATCTGACCTGCTCATGT 1139 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71083971720 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5