BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480631
Length=2209
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17480.1 | Symbols: MLO8, ATMLO8 | Seven transmembrane MLO f... 2948 0.0
> AT2G17480.1 | Symbols: MLO8, ATMLO8 | Seven transmembrane MLO
family protein | chr2:7590295-7594090 REVERSE LENGTH=2368
Length=2368
Score = 2948 bits (1596), Expect = 0.0
Identities = 1894/2034 (93%), Gaps = 36/2034 (2%)
Strand=Plus/Plus
Query 43 TCTTCTTCCATTTGATCTAATAAGTTTCTGGAAATAGGTACAAAGTTCGAGTC--TTTCT 100
|||| |||||||||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct 127 TCTTATTCCATTTGATC---TAAGTTTCTCGAAATAGGTACAAAGTTCGAGTCTTTTTCT 183
Query 101 TGCAACCGCGTGAAACCACCAAGAAACCTA-AGT-AGAGTTTCCGCAAATGTGATTTTAA 158
|| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||
Sbjct 184 TGTAACCGCGTGAAACCACCAAGAAACCTATAGTAAGAGTTTCCGCAAATGTGAATTAAA 243
Query 159 GACAGCTCATCACTCTGTC-TACTTCTACAGTTTTAAGTTAACGAAGCAGGTACAACCAA 217
||||||||||||||||||| ||||||||||| |||||||||||||||||||||| || |
Sbjct 244 GACAGCTCATCACTCTGTCAAACTTCTACAGTATTAAGTTAACGAAGCAGGTACAGCC-A 302
Query 218 AACTaaaaaaaCGCGGAGTTATGGGAATCATCGACGGTTCTTTGCTTCGCCGGCTGATTT 277
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 303 AACTAAAATAACGCGGAGTTATGGGAATCATCGACGGTTCTTTGCTTCGGCGGTTGATTT 362
Query 278 GTCTCAGTCT-T-TTGTC-TC-CGGT----G-GT---GGTGGTTATGGCGGAGGATGAGA 325
||||| |||| | |||| || |||| | || |||||||| ||||||||||||||
Sbjct 363 GTCTCTGTCTCTGGTGTCTTCTCGGTGGAGGAGTGACGGTGGTTACGGCGGAGGATGAGA 422
Query 326 AGAACGTGATACATAAAAAGCTTAATCAGACTCCGACTTGGGCTGTTGCTGCTGTTTGTA 385
|||| ||| |||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 423 AGAAAGTGGTACATAAACAGCTTAATCAAACTCCGACTTGGGCTGTTGCTGCTGTTTGTA 482
Query 386 CTTTCTTCATCGTTGTTTCTGTTCTTCTTGAAAAACTTCTTCACAAAGTTGGAAAGGTTC 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CTTTCTTCATCGTTGTTTCTGTTCTTCTTGAAAAACTTCTTCACAAAGTTGGAAAGGTTC 542
Query 446 TATGGGATCGGCACAAGACTGCTCTTCTCGATGCTTTGGAGAAGATCAAAGCAGAGCTGA 505
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 543 TATGGGATCGGCACAAGACAGCTCTTCTTGACGCTTTGGAGAAGATCAAAGCAGAGCTGA 602
Query 506 TGGTTCTTGGATTCATCTCTTTGCTTCTGACATTTGGAGAAAGCTACATTTTGGATATTT 565
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 603 TGGTTCTTGGATTCATCTCTTTGCTTCTGACATTTGGACAAACCTACATTTTGGATATTT 662
Query 566 GTATCCCTTCACATGTTGCTCGTACGATGCTCCCGTGCCCTGCTCCTAAACC-GAAAAAG 624
||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct 663 GTATCCCTTCACATGTTGCTCGTACGATGCTCCCGTGTCCTGCTCCTAA-CTTGAAAAAG 721
Query 625 GAGGAAGATGACAATGGGGAAAGTCACAGGAGACTCTTGTCGTTTGAGCACAGATTCTTA 684
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 722 GAGGATGATGACAATGGTGAAAGTCACAGGAGACTCTTGTCGTTTGAGCACAGATTTTTA 781
Query 685 TCAGGAGGTGAAGCGTCTCCCACTAAATGCAAGAAGGAGGGTTATGAAGAGCTTATCTCT 744
|| ||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 782 TCTGGAGGTGAAGCATCTCCCACTAAATGCACGAAGGAGGGTTATGTAGAGCTTATCTCT 841
Query 745 GCTGAGGCACTTAATCAGTTGCACATACTTATCTTCTTCTTAGCTGTTTTCCATGTTCTT 804
|| |||||||| ||||||||||||| ||||| ||||||||||| ||||||| ||||||
Sbjct 842 GCCGAGGCACTCCATCAGTTGCACATCCTTATATTCTTCTTAGCCATTTTCCACGTTCTT 901
Query 805 TACAGCTTCTTAACTATGATGCTTGGAAGGTTGAAGATTCGCGGATGGAAGCATTGGGAA 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TACAGCTTCTTAACTATGATGCTTGGAAGGTTGAAGATTCGCGGATGGAAGCATTGGGAG 961
Query 865 AATGAGACATCATCTCGTAACTACGAGTTTTCAACAGATACTTCCAGATTCAGGCTAACT 924
|||||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 962 AATGAGACATCATCCCATAATTACGAGTTTTCAACAGACACTTCCAGATTCAGGCTAACT 1021
Query 925 CATGAAACGTCTTTTGTAAGAGCACACACCAGTTTCTGGACTCGGATTCCATTCTTTTTC 984
|||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1022 CATGAAACATCTTTTGTGAGAGCGCACACCAGTTTCTGGACCCGGATTCCATTCTTTTTC 1081
Query 985 TATATTGGATGTTTTTTCAGACAGTTTTTCAGATCTGTTGGGAGAACTGACTATTTGACA 1044
||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1082 TATGTTGGATGCTTTTTCAGACAGTTTTTCAGATCCGTTGGGAGAACTGACTATTTGACA 1141
Query 1045 TTGAGAAATGGATTCATCGCTGTTCATCTAGCTCCAGGAAGTCAATTTAACTTCCAAAAA 1104
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1142 TTGAGAAATGGTTTCATCGCTGTTCATTTAGCTCCAGGAAGTCAATTTAACTTCCAAAAA 1201
Query 1105 TACATAAAAAGATCGTTGGAGGATGATTTCAAAGTGGTCGTTGGAGTCAGCCCTGTCTTG 1164
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1202 TACATTAAAAGATCGTTGGAGGATGATTTCAAGGTAGTCGTTGGAGTCAGCCCTGTCTTG 1261
Query 1165 TGGGGATCTTTTGTTCTATTCCTCCTCCTAAATATTGATGGCTTTAAGATGTTGTACGTC 1224
|||||||||||||| ||||||||||||||||||||||| ||||| |||||| ||| | ||
Sbjct 1262 TGGGGATCTTTTGTGCTATTCCTCCTCCTAAATATTGACGGCTTCAAGATGATGTTCATC 1321
Query 1225 GGCACTGCAATACCGGTTATCATAATTTTAGCTGTAGGGACAAAGCTTCAAGCGATTATG 1284
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1322 GGCACTGCAATACCGGTTATTATCATTTTAGCTGTAGGGACAAAGCTTCAAGCGATTATG 1381
Query 1285 ACAAGGATGGCTCTCGGAATCACCGATAGACATGCTGTAGTTCAAGGAATGCCGCTTGTA 1344
|||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1382 ACAAGGATGGCTCTTGGTATCACAGATAGACATGCGGTAGTTCAAGGAATGCCGCTTGTA 1441
Query 1345 CAAGGCAACGATGCGTATTTCTGGTTCGGTCGTCCCCATTTGATTCTCCATCTCATGCAT 1404
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 CAAGGCAACGATGAGTATTTCTGGTTCGGTCGTCCCCATTTGATTCTCCATCTCATGCAT 1501
Query 1405 TTCGCCTTGTTTCAGAACGCGTTTCAGATCACGTATTTCTTTTGGATATGGTATTCCTTT 1464
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1502 TTCGCCTTGTTTCAGAACGCATTTCAGATCACTTATTTCTTCTGGATATGGTATTCCTTT 1561
Query 1465 GGAAAAGATTCTTGCTACCATCCTAATTTCAAGATTGCAATTGTAAAAGTAGGGATTGCT 1524
||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1562 GGATCAGATTCTTGCTACCATCCTAATTTCAAGATTGCACTTGTAAAAGTAGCGATTGCT 1621
Query 1525 TTAGGAGTATTGTGTCTTTGCAGCTACATCACACTTCCTCTTTACGCACTCGTAACTCAG 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 TTAGGAGTATTGTGTCTTTGCAGCTACATCACACTTCCTCTTTACGCACTCGTAACTCAG 1681
Query 1585 ATGGGTTCGCGAATGAAAAAATCGGTATTTGATGAACAAACATCAAAGGCACTCAAGAAA 1644
|||||||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1682 ATGGGTTCTCGGATGAAAAAATCGGTATTCGATGAACAAACGTCAAAAGCACTCAAGAAA 1741
Query 1645 TGGAGAATGGCAGTGAAGAAGAAGAAAGGTGTGAAAGCCACTACTAAGAGACTAGGTGGA 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 TGGAGAATGGCAGTGAAGAAGAAGAAAGGTGTGAAAGCCACTACTAAGAGACTAGGTGGA 1801
Query 1705 GACGGAAGCGCGAGCCCTACGTCATCAACAGTTAGGTCTACTTCGTCTATACGATCATTG 1764
|| ||||| |||||||||||| |||| ||||||||||||||||||||| |||| ||||||
Sbjct 1802 GATGGAAGTGCGAGCCCTACGGCATCGACAGTTAGGTCTACTTCGTCTGTACGTTCATTG 1861
Query 1765 CAGCGTTACAAAACCACACCACATTCGATGAGATATGAAGGACTTGACCCTGAAACATCG 1824
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1862 CAGCGTTACAAAACCACACCACATTCGATGAGATACGAAGGACTTGACCCTGAAACATCG 1921
Query 1825 GATCTTGACACAGACAACGAAGCTTTGACTCCTCCCAAATCTCCTCCAAGCTTCGAGCTA 1884
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1922 GATCTCGACACAGATAATGAAGCTTTGACTCCTCCCAAATCTCCTCCAAGCTTCGAGCTT 1981
Query 1885 GTTGTGAAGGTTGAACCAAATAAGCTAGAGACCAAGACCGGTGAGACTAGCCGTGACACT 1944
|||||||| ||||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct 1982 GTTGTGAAAGTTGAACCAAATAAG--A----CCAATACCGGTGAGACTAGCCGTGACACT 2035
Query 1945 GAAACTGATTCTAAAGAGTTCTCTTTTGTCAAGCCTGCGCCGAGTAAAGAACCATCGCAA 2004
|||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||| |||
Sbjct 2036 GAAACTGATTCTAAAGAGTTCTCTTTCGTCAAGCCTGCTCCGAGTAATGAATCATCTCAA 2095
Query 2005 GACCGGTGAGACTAGTAAAGAGTTCTTTTCAAG-T-TAAGCCTGCGCCAAGTAA 2056
|||||||||||||||| | || || | ||| | || |||||||||||||||
Sbjct 2096 GACCGGTGAGACTAGTCAGGA-TTGTG---AAGGTGTA-GCCTGCGCCAAGTAA 2144
Score = 204 bits (110), Expect = 4e-51
Identities = 126/134 (94%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 2076 ttttttttGGTTTAATTTATCTTATGCTTTTGTAAATCATTGCCGTGGTGATAAAGTAAT 2135
||||||||||||| |||||||| ||||| |||||||||| |||||||| |||||||||||
Sbjct 2218 TTTTTTTTGGTTTCATTTATCTAATGCTATTGTAAATCAATGCCGTGGCGATAAAGTAAT 2277
Query 2136 GTATTGACGACCATATTAATTAAAATAGGCTGAAGAAAATGAGGGACAAATATTAAGAAT 2195
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 GTATTGATGACCATATTAATTAAAATAGGCTGAAGAAAATGAGGGACAAATATTAAGAAT 2337
Query 2196 CAATTTCGTAAAAA 2209
|| ||| |||||||
Sbjct 2338 CAGTTTAGTAAAAA 2351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109587789735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5