BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480634 Length=1569 Score E Sequences producing significant alignments: (Bits) Value AT2G17500.1 | Symbols: | Auxin efflux carrier family protein |... 2272 0.0 > AT2G17500.1 | Symbols: | Auxin efflux carrier family protein | chr2:7606757-7609261 FORWARD LENGTH=1676 Length=1676 Score = 2272 bits (1230), Expect = 0.0 Identities = 1378/1448 (95%), Gaps = 16/1448 (1%) Strand=Plus/Plus Query 87 ATaaaaaaaTGGGATTCTGGTCATTGTTGGAGGTGGCTTCTATGCCGGTTTTTCAAGTTC 146 ||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 207 ATAAAAAGATGGGATTCTGGTCGTTGTTGGAGGTGGCTTCTATGCCGGTTATTCAAGTTC 266 Query 147 TTGTCATGAGTCTTGTGGGAGCTTTCTTGGCCTCTGATCGTTGCAAGCTCTTCCCTGTTG 206 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 267 TTTTCATGAGTCTTGTGGGAGCTTTCATGGCCTCTGATCGTTGCAAGCTCTTCCCTGTTG 326 Query 207 AAGCTCGCAATTCCATGAACAAGGTGGTGTTTGTACTATTTGCACCGGCTCTCATGTTTG 266 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 327 AAGCCCGTAATTCCATGAACAAGGTGGTGTTTGTACTATTTGCACCGGCTCTCATGTTTG 386 Query 267 CCAATCTAGCTCAGACGGTGACACTTGAAGACATTATCTCATGGTGGTTTATGCCGGTGA 326 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 387 CCAATCTAGCTCAGACGGTTACACTTGAAGACATCATCTCATGGTGGTTTATGCCGGTGA 446 Query 327 ACATGGGACTTACATTCCTAATCGGAGGACTTCTTGGGTGGATAGTTGTTAAGATTTTGA 386 |||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||| Sbjct 447 ACATGGGACTTACATTTCTAATCGGAGGACTTCTTGGGTGGTTGGTTGTTAAGATTTTGA 506 Query 387 AACCACCTCCTTATCTTGAAGGTCTTATTGTTGCAACTTGTTCTGCAGGAAATATGGGGA 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 507 AACCACCTCCTTATCTTGAAGGTCTTATTGTTGCAACTTGTTCTGCAGGAAATATGGGGA 566 Query 447 ACCTACCAATCATACTTGTCCCAGCAATCTGCGATGAGGATAAGAGTCCGTTTGGTAACC 506 |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| Sbjct 567 ACCTACCAATCATACTTGTCCCAGCAATCTGCGATGAGGACAAAAGTCCTTTTGGTAACC 626 Query 507 GAAGTGTATGTAGAACCGTCGGGCTCTCTTACGCGTCTTTCTCCATGGCGCTAGGGGGTT 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 627 GAAGTGTATGTAGAACCGTCGGGCTCTCTTACGCGTCTTTCTCCATGGCGCTAGGGGGTT 686 Query 567 TCTACATATGGACATACACATTTCGGTTGATAAAAGGGTCCGCAATGAGAA-TTCAAGCC 625 |||||||||||||||||||||| ||| |||| |||||||||||||||| || |||||||| Sbjct 687 TCTACATATGGACATACACATTCCGGCTGATTAAAGGGTCCGCAATGA-AAGTTCAAGCC 745 Query 626 ATAGAAGAATCTGAGAGAACAGCAATTAAATCATCCAATAGCGACTTAGAGGCTGATCAT 685 |||||||||||||||| || ||||||||||||||||||||| |||||||| ||||||||| Sbjct 746 ATAGAAGAATCTGAGAAAATAGCAATTAAATCATCCAATAGTGACTTAGAAGCTGATCAT 805 Query 686 AAGACCCATCTCCTCGGTGCACCCGAAGATAAGGAAAACAAAGTGGTAAAGGAAGAGACA 745 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| Sbjct 806 AAGACCCATCTCCTCGGTGCACCGGAAGACAAGGAAAACAAAGTGGTAAAGGAAAAGACA 865 Query 746 GGGTTTTGGAGGAAAGTAGTAGACTTCCTCCATGATATATTGGAGGAACTTCTCGCACCA 805 ||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| |||||| Sbjct 866 GGGTTTTGGAGAAAAGGAGTAGACTTCCTCCATGAGATATTGGAGGAGCTTCTTGCACCA 925 Query 806 CCTACACTTGGTGCAATTATCGGTTTCATCTTCGGTGCAGTTAGATGGCTCAGAAATCTT 865 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 926 CCTACACTTGGTGCAATTATCGGTTTCATTTTCGGTGCAGTAAGATGGCTCAGAAATCTT 985 Query 866 ATCATAGGTGATGATGCTCCTTTACGAATAGTACAAAGCACTGCAAAACTTCTTGGAGAT 925 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 986 ATCATAGGTGATGATGCTCCTTTACGAATAGTACAAAGCACTGCAAAACTTCTTGGAGAT 1045 Query 926 GGGACCATTCCTTGTATGACTATTATACTAGGGGGCAACCTCATTCAAGGTTTACGTTCT 985 ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1046 GGGACCATTCCCTGTATGACTATTATACTAGGGGGAAACCTCATACAAGGTTTACGTTCT 1105 Query 986 TCGGCAGTCAAACC-AGTGGTTGTTCTTGGAATAGTCTGTGTTCGGTACATTAT-TATGC 1043 |||||||||||||| | ||||||| |||||||||||||||||||||||||| | ||||| Sbjct 1106 TCGGCAGTCAAACCGA-TGGTTGTACTTGGAATAGTCTGTGTTCGGTACAT-AGCTATGC 1163 Query 1044 CAATTATCGGTATAGGCATTGTACTAACAGCTGCGAATCTCGGATTTCTTCCAGCGGATC 1103 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1164 CAATTATCGGTATAGGCATTGTACTAACAGCTGCAAATCTCGGATTTCTTCCAGCTGATC 1223 Query 1104 CTTTGTTTCAGTATGTTTTGATGCTTCAATTCACCCTCCCGCCTGCCATGAATATCGGTA 1163 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1224 CTTTGTTTCAGTATGTTTTGATGCTTCAGTTCACCCTCCCGCCTGCCATGAATATCGGTA 1283 Query 1164 CCATGACACAGCTGTACAATGTTGCGCAAGACGAGTGCTCAGTGCTCATGCTTTGGACCT 1223 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1284 CCATGACACAGCTGTACAATGTTGCTCAAGACGAATGCTCAGTGCTCATGCTTTGGACCT 1343 Query 1224 ACTTGGTCGCGATACTGGCCCTCACTGTATGGTCCACCATCTTCCTTCACTTGTTAGTCT 1283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1344 ACTTGGTCGCGATACTGGCCCTCACTGTATGGTCCACCATCTTCCTTCACTTGTTAGTCT 1403 Query 1284 AGAGAACCTGCAACTCT--ATGAGAACAAGAAGATTCTTTCTCTCTACTACTACAGAGAC 1341 | ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| Sbjct 1404 AAAGAACCTGCAACTCTGTATGAGCACAAGAAGATTCTATCTCTCTACTACTACAGAGAC 1463 Query 1342 CATGAGGAAAACTCTGTGAAGGGATCTTACCATTCTTTTTGTCTATCACATAAAATTTGA 1401 | || | |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1464 C--GAAG----CTCTGTCAAGGGATCTTACCATTCTTTTTGTCTATCACATAAAATTTGA 1517 Query 1402 TTGTAACTTGATAGATTTTTCTGGTTGCATGTGTGCCTTTCTGCAAATCTTCATTTTTCT 1461 | |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1518 TCATAACTTGATAGATTTTTCTGGTTGCATGCGTACCTTTCTGCAAATCTTCATTTTTCT 1577 Query 1462 CCATATCCCCATTTGTAAAACGCAAATATTGTATCAAGTATTACATCATGTT-AATGAAA 1520 ||||||||| ||||||||| ||| |||||||||||||||||||||||| ||| ||||||| Sbjct 1578 CCATATCCCGATTTGTAAA-CGCCAATATTGTATCAAGTATTACATCAAGTTTAATGAAA 1636 Query 1521 AAGCATAT 1528 |||||||| Sbjct 1637 AAGCATAT 1644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77459440935 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5