BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480656
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17640.1 | Symbols: ATSERAT3;1, SAT-106 | Trimeric LpxA-like... 1722 0.0
AT4G35640.1 | Symbols: ATSERAT3;2, SERAT3;2 | serine acetyltran... 809 0.0
AT1G78330.1 | Symbols: | pseudogene, putative serine acetyltra... 169 7e-41
> AT2G17640.1 | Symbols: ATSERAT3;1, SAT-106 | Trimeric LpxA-like
enzymes superfamily protein | chr2:7668078-7670495 REVERSE
LENGTH=1401
Length=1401
Score = 1722 bits (932), Expect = 0.0
Identities = 1066/1130 (94%), Gaps = 11/1130 (1%)
Strand=Plus/Plus
Query 95 TCAAAGTTT-TGCATAATATCCATTAAAGTAGCCTCCTTTTTGCTTTCTCCG----TCTC 149
||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 154 TCAAAGTTTCT-CATCATATCCATTAAAGTAGCCTCCTTTTTGCTTTCTCCGTCTCTCTC 212
Query 150 TCTTTTGTCCAATC-AAAAGAGTTTGTGATTCTTCTTCATCGTCTTCTT-G-GAGATATG 206
|||||||||||||| |||||||||||||||||||||| ||||||| ||| | ||||||||
Sbjct 213 TCTTTTGTCCAATCAAAAAGAGTTTGTGATTCTTCTTTATCGTCTCCTTGGAGAGATATG 272
Query 207 AACGGCGATGAGCTTCCTTTCGAGAGGGGTTTCGAGGTTTACGCTAAGGGAACGCATAAG 266
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 273 AATGGCGATGAGCTTCCTTTCGAGAGTGGTTTCGAGGTTTACGCTAAGGGAACTCATAAG 332
Query 267 TCAGAGTTTGACTCGAATTTGCTTGATTCTCGTTCTGATCCTATTTGGGATGCTATAAGA 326
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 333 TCAGAGTTTGACTCGAATTTGCTTGATCCTCGTTCTGATCCTATTTGGGATGCTATAAGA 392
Query 327 GAAGAAGCTAAGCTTGAGGCAGAGAAAGAGCCTATTTTGAGTAGCTTCTTGTATGCTGGT 386
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GAAGAAGCTAAACTTGAGGCAGAGAAAGAGCCTATTTTGAGTAGCTTCTTGTATGCTGGT 452
Query 387 ATCTTGGCACATGACTGTTTAGAGCAAGCTTTAGGGTTTGTTCTAGCCAACCGTCTCCAA 446
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 ATCTTAGCACATGATTGTTTAGAGCAAGCTTTAGGGTTTGTTCTAGCCAACCGTCTCCAA 512
Query 447 AACCCAACCTTGTTGGCAACTCAACTTTTGGACATATTTTATGGTGTTATGATGCATGAC 506
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 513 AACCCAACCTTGTTGGCAACACAACTCTTGGATATATTTTATGGTGTTATGATGCATGAC 572
Query 507 AAAAGTATTCAGAGTTCGATTCGCCATGATATTCAGGCATTTAAAGACCGGGATCCTGCT 566
||| |||||||||||||||||||||||||| | |||||||||||||| || |||||||||
Sbjct 573 AAAGGTATTCAGAGTTCGATTCGCCATGATCTCCAGGCATTTAAAGATCGTGATCCTGCT 632
Query 567 TGTCTCTCGTATAGTTCTGCTATTTTACATCTGAAGGGGTATCACGCGTTGCAAGCATAC 626
||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 633 TGTCTGTCGTATAGTTCTGCTATTTTACATCTGAAGGGTTATCATGCGTTACAAGCATAT 692
Query 627 AGGGTTGCGCATAAACTGTGGAATGAAGGGCGGAAACTATTAGCTCTTGCATTGCAAAGC 686
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 693 AGGGTTGCGCATAAACTGTGGAATGAAGGGAGGAAACTATTAGCTCTTGCATTGCAAAGC 752
Query 687 CGAATAAGCGAGGTTTTTGGAATCGACATTCATCCAGCGGCAAGAATTGGGGAGGGAATA 746
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 753 CGAATAAGCGAGGTTTTTGGCATTGACATACATCCAGCGGCAAGAATTGGGGAGGGAATA 812
Query 747 TTGTTGGATCATGGAACTGGAGTGGTCATCGGTGAGACCGCTGTGATAGGAAACGGTGTC 806
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 813 TTGTTGGATCATGGAACTGGAGTGGTCATTGGTGAGACCGCTGTGATAGGCAACGGTGTC 872
Query 807 TCGATCTTACATGGTGTGACTTTAGGAGGAACCGGAAAGGAAACTGGTGATCGTCACCCA 866
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 873 TCGATCTTACATGGTGTGACTTTAGGAGGAACCGGAAAGGAAACTGGCGATCGCCACCCA 932
Query 867 AAAATAGGTGAAGGTGCATTGCTTGGAGCTTGTGTGACTATACTTGGGAACATAAGTATA 926
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 933 AAGATAGGTGAAGGTGCATTGCTTGGAGCTTGTGTGACTATACTTGGTAACATAAGCATA 992
Query 927 GGTGCTGGGGCAATGGTAGCCGCGGGTTCACTTGTATTAAAGGACGTTCCTTCGCATAGT 986
|||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||||||||
Sbjct 993 GGTGCTGGAGCAATGGTAGCTGCAGGTTCACTTGTGTTAAAAGACGTTCCTTCGCATAGT 1052
Query 987 GTGGTGGCTGGAAATCCTGCGAAACTGATCAGGGTCATGGAAGAGCAAGACCCATCTCTA 1046
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1053 GTGGTGGCTGGAAATCCTGCAAAACTGATCAGGGTCATGGAAGAGCAAGACCCGTCTCTA 1112
Query 1047 GCAATGAAACACGATGCTACTAAAGAGTTCTTTCGGCATGTAGCTGATGGTTACAGAGGG 1106
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1113 GCAATGAAACACGATGCTACTAAAGAGTTCTTTCGACATGTAGCTGATGGTTACAAAGGG 1172
Query 1107 GCACATTCTAATGGACCATCAGTTTCAGGAGGAGATACAGAGAAAGGACACACTAACTGC 1166
||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 1173 GCACAATCTAACGGACCATCACTTTCAGCAGGAGATACAGAGAAAGGACACACTAACAGC 1232
Query 1167 AAATCATGAGATCCTTGTATGCGA-TTTGCTTATCATCATAAGCCAATTC 1215
| ||||||||||| |||||||| | ||| |||| |||||||||| |||||
Sbjct 1233 ACATCATGAGATCTTTGTATGCAAATTT-CTTACCATCATAAGCTAATTC 1281
Score = 152 bits (82), Expect = 8e-36
Identities = 91/95 (96%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 1 GTAGAACCATTCAAAGCGGTGGACACTGGAACACAACAC-AACACAAGATCAACGAGAAA 59
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 28 GTAGAACCATTCAAAGCGGTGGACACTGGAACACAACACAAACACAAGATCAACGAGAAA 87
Query 60 CCAAACATCAACAACGACCATCAAGAGAATCCACT 94
||||||| ||||| |||||||| ||||||||||||
Sbjct 88 CCAAACAACAACAGCGACCATCGAGAGAATCCACT 122
> AT4G35640.1 | Symbols: ATSERAT3;2, SERAT3;2 | serine acetyltransferase
3;2 | chr4:16905579-16908357 REVERSE LENGTH=1624
Length=1624
Score = 809 bits (438), Expect = 0.0
Identities = 738/882 (84%), Gaps = 24/882 (3%)
Strand=Plus/Plus
Query 292 ATTCTCGTTCTGATCCTATTTGGGATGCTATAAGAGAAGAAGCTAAGCTTGAGGCAGAGA 351
||||| ||| ||| || ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 580 ATTCTAGTTATGACCCAATTTGGGATTCTATAAGAGAAGAAGCTAAGCTTGAGGCAGA-A 638
Query 352 AAG-AGCCTATTTTGAGTAGCTTCTTGTATGCTGGTATCTTGGCACATGACTGTTTAGAG 410
|| |||| ||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 639 GAGGAGCCGGTTTTGAGTAGCTTCTTGTATGCTAGTATCTTGTCGCATGACTGTTTAGAG 698
Query 411 CAAGCTTTAGGGTTT-GTTCTAGCCAACCGTCTCCAAAACCCAACCTTGTTGGCAACTCA 469
||||| || | |||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 699 CAAGCATT-GAGTTTTGTTCTAGCTAACCGTCTCCAAAACCCTACCTTGTTGGCAACTCA 757
Query 470 ACTTTTGGACATATTTTATGGTGTTATGATGCATGACAAAAGTATTCAGAGTTCGATTCG 529
||| |||| ||||||| |||||| | ||||||| | ||||||| || ||||||||
Sbjct 758 GCTTATGGATATATTTTGCAACGTTATGGTACATGACAGAGGTATTCAAAGCTCGATTCG 817
Query 530 CCATGATATTCAGGCATTTAAAGACCGGGATCCTGCTTGTCTCTCGTATAGTTCTGCTAT 589
| |||| |||||||||| |||||| | |||||||||||||| ||||||||||| |||||
Sbjct 818 TCTTGATGTTCAGGCATTCAAAGACAGAGATCCTGCTTGTCTATCGTATAGTTCGGCTAT 877
Query 590 TTTACATCTGAAGGGGTATCACGCGTTGCAAGCATACAGGGTTGCGCATAAACTGTGGAA 649
||||||||||||||| |||| || |||| || || || || || ||||| |||||||
Sbjct 878 TTTACATCTGAAGGGCTATCTTGCACTGCAGGCGTATAGAGTAGCACATAAGTTGTGGAA 937
Query 650 TG-AAGGGCGGAAACTATTAGCTCTTG-CATTGCAAAGCCGAATAAGCGAGGTTTTTGGA 707
| |||| | ||||||||||| ||| || ||||||||||| |||||||||||||||||
Sbjct 938 -GCAAGGAAGAAAACTATTAGCA-TTGGCACTGCAAAGCCGAGTAAGCGAGGTTTTTGGA 995
Query 708 ATCGACATTCATCCAGCGGCAAGAATTGGGGAGGGAATATTGTTGGATCATGGAACTGGA 767
||||| |||||||| || |||||||||||| | ||||||||||||||||||||||||||
Sbjct 996 ATCGATATTCATCCCGCTGCAAGAATTGGGAAAGGAATATTGTTGGATCATGGAACTGGT 1055
Query 768 GTGGTCATCGGTGAGACCGCTGTGATAGGAAACGGTGTCTCGATCTTACATGGTGTGACT 827
|||||||| |||||||| ||||||||||| || ||||||| || || |||||||||||
Sbjct 1056 GTGGTCATAGGTGAGACTGCTGTGATAGGCGACCGTGTCTCAATTTTGCATGGTGTGACA 1115
Query 828 TTAGGAGGAACCGG-AAAGGAAACTGGTGATCGTCACCCAAAAATAGGTGAAGGTGCA-T 885
||||||||||| || |||| |||| ||||| || || ||||| ||||| || ||||| |
Sbjct 1116 TTAGGAGGAACTGGGAAAG-AAACCGGTGACCGCCATCCAAATATAGGCGACGGTGCTCT 1174
Query 886 TGCTTGGAGCTTGTGTGACTATACTTGGGAACAT-AAGTATAGGTGCTGGGGCAATGGTA 944
| |||||||| ||||||||||||||||| ||||| ||| ||||| ||||| |||||||||
Sbjct 1175 T-CTTGGAGCATGTGTGACTATACTTGGTAACATTAAG-ATAGGCGCTGGAGCAATGGTA 1232
Query 945 GCCGCGGGTTCACTTGTATTAAAGGACGTTCCTTCGCATAGTGTGGTGGCTGGAAATCCT 1004
|| || ||||| ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 1233 GCTGCTGGTTCGCTTGTGTTAAAGGATGTTCCTTCGCATAGCATGGTGGCTGGAAATCCA 1292
Query 1005 GCGAAACTGATCAGGGTCATG--GAAGAGCAAGACCCATCTCT-AGCAATGAAACACGAT 1061
|| ||||| ||| |||| || || |||||||| |||||| | | ||||| | || |||
Sbjct 1293 GCAAAACTCATC-GGGTT-TGTTGATGAGCAAGATCCATCTATGA-CAATGGAGCATGAT 1349
Query 1062 GCTACTAAAGAGTTCTTTCGGCATGTAGCTGATGGTTACAGAGGGGCACATTCTAA-TGG 1120
||||| | ||||||||||| ||||||||| || ||| |||| | || || | || |||
Sbjct 1350 GCTACCAGAGAGTTCTTTCAAAATGTAGCTGTTGCTTATAGAGAGACA-ATACCAAATGG 1408
Query 1121 ACCATCAGTTTCAGGAGGAGATACAGAGAAAGGACACACTAA 1162
| | ||||||||||| | || | ||| ||||||| ||| |||
Sbjct 1409 ATCTTCAGTTTCAGG-G-AGTTGCAGGGAAAGGAGACATTAA 1448
> AT1G78330.1 | Symbols: | pseudogene, putative serine acetyltransferase,
blastp match of 78% identity and 4.2e-32 P-value
to GP|22758278|gb|AAN05506.1||AC099399 Putative serine acetyltransferase
{Oryza sativa (japonica cultivar-group)} | chr1:29469848-29471958
REVERSE LENGTH=2111
Length=2111
Score = 169 bits (91), Expect = 7e-41
Identities = 109/118 (92%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 815 ACATGGTGTGACTTTAGGAGGAACCGGAAAGGAAACTGGTGATCGTCACCCAAAAATAGG 874
||| ||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1479 ACAGGGTGTAACGTTAGGAGGAACCGGAAACGAAACTGGTGATCGTCAACCAAAAATAGG 1538
Query 875 TGAAGGTGCATTGCTTGGAGCTTGTGTGACTATACTTGGGAACATAAGTATAGGTGCT 932
||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||||
Sbjct 1539 TGAAGGTGCATTGCTTGGAGCTTGTTTGACTATACTTGGCAACATAAGCATTGGTGCT 1596
Score = 148 bits (80), Expect = 1e-34
Identities = 92/98 (94%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 722 AGCGGCAAGAATTGGGGAGGGAATATTGTTGGATCATGGAACTGGAGTGGTCATCGGTGA 781
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1286 AGCGGCAAGAATTGGGGAGGGAATATTGTTGGATCATGGAACTGGAATGGTCATTGGTGA 1345
Query 782 GACCGCTGTGATAGGAAACGGTGTCTCGATCTTACATG 819
|||| |||||||||| ||| |||||||||| |||||||
Sbjct 1346 GACCTCTGTGATAGGCAACAGTGTCTCGATATTACATG 1383
Score = 143 bits (77), Expect = 5e-33
Identities = 98/108 (91%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 601 AGGGGTATCACGCGTTGCAAGCATACAGGGTTGCGCATAAACTGTGGAATGAAGGGCGGA 660
|||| ||||| |||||||||| | | |||||||| ||||| |||||||||||||||| ||
Sbjct 974 AGGGTTATCATGCGTTGCAAGGACATAGGGTTGCTCATAAGCTGTGGAATGAAGGGCCGA 1033
Query 661 AACTATTAGCTCTTGCATTGCAAAGCCGAATAAGCGAGGT--TTTTGG 706
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1034 AACTATTAGCTCTTGCATTGCAAAGCCGAATAAGCGAGGTAGTTTTGG 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62499678525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5