BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480666 Length=837 Score E Sequences producing significant alignments: (Bits) Value AT2G17710.1 | Symbols: | unknown protein; Has 39 Blast hits to... 1160 0.0 > AT2G17710.1 | Symbols: | unknown protein; Has 39 Blast hits to 39 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:7693596-7694746 FORWARD LENGTH=911 Length=911 Score = 1160 bits (628), Expect = 0.0 Identities = 793/864 (92%), Gaps = 45/864 (5%) Strand=Plus/Plus Query 14 TATAGTTTGTCTTAACGTACAAGATAATTTGAAGGGTAGACGTAGACGTTGGATACTTCT 73 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 47 TATAGTTTGTCTTAACGTACAAGATAATTTGAAAGGTAGACGTAGACGTTGGATACTTAT 106 Query 74 TTGGTAGACTCTTAAGAATCTTAGGTGTATCTCTTTAGTTTGAAGGTAAGATTCAGAATC 133 ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 107 TTGGTAGGCTCTTAAGAATCTTAGGTGTATCTCTTTAGTTTGAAGGTTAGATTCAGAATC 166 Query 134 TCTGTAGATTC------A---TTTT-GGTGTGATCGTTGTGTTG--------T--AT--- 170 ||||||||||| | |||| |||||||| |||||||| | || Sbjct 167 TCTGTAGATTCATTAGTAGCTTTTTCTGTGTGATCTTTGTGTTGTATATATATAGATCGA 226 Query 171 A-T-A-TTTAGC---T----GGTGAAGTTGTGGTATGAATATGAAGAAACAGATTATGGA 220 | | | |||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 227 ATTGATTTTAGCTGGTGAAAGGTGAAGTTGTGGTATGAATATGAAGAAACAGATTATGGA 286 Query 221 TGAGTCTG-AGAAGTCATTGATGCCGCCTCCTCCTCCACCG---CTTCCTCCATCTCCA- 275 |||||||| | ||||||||||||| |||||||||||||||| |||||||||||| || Sbjct 287 TGAGTCTGTA-AAGTCATTGATGCTGCCTCCTCCTCCACCGCTTCTTCCTCCATCT-CAG 344 Query 276 GGATATGGATTTAGAAAGATCCATGGAGACAGCATAACCAATAAACAGATCAAGAAGTTT 335 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 345 GGATATGGATCAAGAAAGATCGATGGAGACAGCATAACCAATAAACAGATCAAGAAGTTC 404 Query 336 TGGAGGCAGAAGCAGATCATTGAAGAGGATCATCTCTTTTCTGCTATTAAGGCTGCAGCT 395 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 405 TGGAGACAGAAGCAGATCATTGAAGAGGATCATCTCTATTCTGCTATTAAGGCTGCAGCT 464 Query 396 CGTGTCAGAGCTCGTAATCTCTCTGATGAGGACTACAAACGCTTTGAAGAAAGCTTGGAC 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 465 CGTGTCAGAGCTCGTAATCTCTCTGATGAGGACTACAAACGCTTTGAAGAAAGCTTGGAC 524 Query 456 ATGGAGGTCCTG-ATAACCGAAGATCATCAGGGATTGAAAGACTGGTGGACAAAGAGCAA 514 ||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 ATGGAGGACCTGGA-AACCGAAGATCATCAGGGATTGAAAGACTGGTGGACAAAGAGCAA 583 Query 515 ATACGCATACTTGAACCAGCCGGCTCTTGGATCTGCAGATTCACTGAAGAGAAAGAGGTT 574 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 584 ATACGCGTACTTGAACCAGCCGGCTCTTGGATCTGCAGATTCACTGAAGAGAAAGAGGTT 643 Query 575 TTCGACATATACACCAAACTGGTTCTCGTTCAAGCCATGCAATCCTCTCTACGCAACTTC 634 |||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 644 TTCGACTTATACACCAAACTGTTTCTCGTTCAAGCCTTGCAATCCTCTCTACGCAACTTC 703 Query 635 GCTCAATGTCTTTTGAACCATGAGCAGCAAACTCTGCAAGATCAATTGTCTTGCATATAT 694 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 704 GCTCAATGTCTTTTGAACCATGAGCAGCAAACTCTGCAAGATCAATCGTCTTGCATATAT 763 Query 695 GTATATAGATGTTCGTGTGTGTGTCTCTGAACAT-TCATGTGTTAATGCTTCTATGTTAA 753 ||||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| |||| Sbjct 764 GTATATATTTGTTCGTGTGTGT--CTCTGTACATGTCATGTGTTATTGCTTCTATATTAA 821 Query 754 TGGATCTGGACTTTGGTGTGGTTTTTGATTTGTAACTGTTGAATAAAATCTTTCTATGGA 813 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 822 TGGATCTGGACTTTGGTGTGGTTGTTGATTTGTAACTGTTGAATAAAATCTTTCTATGGA 881 Query 814 ACATTAATTTCTTCTTGTTCCATA 837 ||| |||||||||||||||||||| Sbjct 882 ACACTAATTTCTTCTTGTTCCATA 905 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40790127364 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5