BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480672
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17780.1 | Symbols: MCA2 | PLAC8 family protein | chr2:77248... 2222 0.0
AT4G35920.1 | Symbols: MCA1 | PLAC8 family protein | chr4:17011... 468 8e-131
> AT2G17780.1 | Symbols: MCA2 | PLAC8 family protein | chr2:7724885-7727404
REVERSE LENGTH=1681
Length=1681
Score = 2222 bits (1203), Expect = 0.0
Identities = 1399/1493 (94%), Gaps = 16/1493 (1%)
Strand=Plus/Plus
Query 1 AGGAAGAGAAATGGCTAATTCATGGGATCAGTTAGGAGAAATTCCGTCAGTAGCTCAGCT 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 151 AGGAAGAGAAATGGCTAATTCATGGGATCAGTTAGGAGAAATTGCGTCAGTGGCTCAGCT 210
Query 61 TACAGGCATAGACGCCCTAAAACTGATTGGAATGATAGTAAACGCTGCGAATACAGCTCG 120
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 211 TACAGGCATAGACGCTCTGAAACTGATTGGAATGATAGTAAACGCTGCGAATACAGCTCG 270
Query 121 AATGCACAAGAAGAATTGTCGTCAATTCGCTCACCATCTTAAGCTCATCCGTAATTTGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 AATGCACAAGAAGAATTGTCGTCAATTCGCTCACCATCTTAAGCTCATCCGTAATTTGCT 330
Query 181 AGAGCAGATAAAAAACTCTGAGATGAATCAACGTTCAGAGATTCTTGAGCCGCTTCAAGG 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 AGAGCAGATTAAAAACTCTGAGATGAATCAACGTTCAGAGATTCTTGAGCCGCTTCAAGG 390
Query 241 ACTTGATGATGCTCTTAGAAGATCTTACATTTTAGTCAAAAGTTGTCAAGAAAAGAGTTA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 391 ACTTGATGATGCTCTTAGAAGATCTTACATTTTAGTCAAAAGTTGTCAAGAAAAAAGTTA 450
Query 301 TCTTTACTTGTTGGCTATGGGATGGAACATTGTTAACCAGTTTGAAAAAGCTCAGACCGA 360
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 451 TCTTTACTTGTTGGCTATGGGCTGGAACATTGTTAACCAGTTTGAAAAAGCTCAGAATGA 510
Query 361 GATTGATCTGTTTCTCAAGATCGTTCCACTCATAAATATGGCGGATAATGCTCGCATTCG 420
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 511 GATTGATCTGTTTCTCAAGATCGTTCCACTAATAAATATGGCGGATAATGCTCGGATTCG 570
Query 421 GGAGAGGTTAGAAGCTATTGAACGTGATCAGCGTGAGTACACTCTTGATGAAGAGGATAA 480
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 571 GGAGAGGCTAGAAGCTATTGAACGTGATCAGCGTGAGTATACTCTTGATGAAGAGGATAG 630
Query 481 AAAGGTGCAAGATGTTATTTTGAAACAAGAATCCACTAGAGAAGCAGCTACATCGGTTTT 540
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 631 AAAGGTGCAAGATGTTATTTTGAAACAAGAATCTACTAGAGAAGCTGCTACATCGGTTTT 690
Query 541 AAAGAAAACGCTTTCTCGTTCCTACCCGAACATGGGGTTCTGCCAAGCGCTTAAAACAGA 600
|||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||
Sbjct 691 AAAGAAGACGCTCTCTCGTTCATACCCGAACATGGGGTTCTGCGAAGCGCTTAAAACCGA 750
Query 601 GGAGGAGAAACTGCAACTTGAGTTACATCGTTCGCGGGCGCGGTATGATGCTGATCAATG 660
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 751 GGAGGAGAAACTGCAACTTGAGTTGCAACGTTCGCGGGCGCGGTATGATGCTGATCAATG 810
Query 661 TGAAGTTATACAACGTTTGATTGATGTTACACAAACTGCTGCTTCTTCTGTTGAACCTAA 720
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 811 TGAAGTTATACAACGTTTGATTGATGTTACACAAACTGCTGCTACT---GTTGAACCTAA 867
Query 721 TCTTGAAAAGGTTTTGACTAAGAAAGAAGAGCTTACCTCTAGCAAGAAGAAAGATGATTT 780
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 868 TCTTGAAAAGGTGTTGACTAAGAAAGAAGAGCTTACCTCTAGCAAGAAGAGAGATGATTT 927
Query 781 GTATGACACGGATAGTTGGTCTCTAAT-G-GTTGAATGTAGATCAACGTCTTATGTTTCA 838
|||||||||||||||| | | || | | | || | |||||||||||||||||||||
Sbjct 928 GTATGACACGGATAGTAG-TAG-TATTCGAGCAGATTCAAGATCAACGTCTTATGTTTCA 985
Query 839 TCCGGACATGAACTACTTTCGGGAAGATCATCGCAACACCATGAAAATTGGCACGCCGAC 898
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 986 TCCGGACATGAACTACTTTCGGGAAGATCATTGCAACACCGTGGAAATTGGCACGCCGAC 1045
Query 899 TTGCTGGATTGTTGTTCAGAACCTTGTCTTTGCTTCAAGACATTCTTTTTCCCGTGTGGT 958
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 1046 TTGCTGGATTGTTGTTCAGAACCTTGTCTTTGCTTGAAGACACTCTTTTTCCCCTGTGGT 1105
Query 959 ACATTGGCAAAGATTTCTACTATGGCAACT-GACAGGCAAATCTCTTCAACTGAAGCGTG 1017
||||||||||||||||| ||| |||||||| | |||||||||||||||||||||| |||
Sbjct 1106 ACATTGGCAAAGATTTCCACTGTGGCAACTAGT-AGGCAAATCTCTTCAACTGAAGTGTG 1164
Query 1018 TAAGAACCTAATGGTGTATTCTTTGATACTCTCATGCTGTTGCTATACTTGCTGCATAAG 1077
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 TAAGAACCTAATCGTGTATTCTTTGATACTCTCATGCTGTTGCTATACTTGCTGCATAAG 1224
Query 1078 GAAGAAGCTTCGAAAGACTCTGAACATAACGGGAGGGTGCATTGACGACTTTTTGTCACA 1137
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 GAAGAAGCTTCGAAAGACACTGAACATAACGGGAGGGTGCATTGACGACTTTTTGTCACA 1284
Query 1138 TCTAATGTGTTGTTGTTGTGCCCTTGTCCAAGAACTGAGAGAAGTCGAGATTCGTGGAGT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1285 TCTAATGTGTTGTTGTTGTGCCCTTGTCCAAGAACTGAGAGAAGTCGAGATTCATCGAGC 1344
Query 1198 TTCTTACGGTACAGAGATGAATAATAAGGAAATGAGTCCACCAACACCTCAGTTCATGGA 1257
||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||
Sbjct 1345 TTCTTACGGTACAGAGAAGAGTAATAAGGAAATGAGTCCACCAACACCTCAGTTTATGGA 1404
Query 1258 AGAATGATG-CTTGTCCAACACGAAACAGAATTGAGTTTTTACGATGAAATGAATCTTCT 1316
||||||| | |||||||| |||||||||||| |||| ||| |||||||||||||||||
Sbjct 1405 AGAATGA-GACTTGTCCAGCACGAAACAGAACCCAGTTATTATGATGAAATGAATCTTCT 1463
Query 1317 AATTTCATTGTTGACATCGCGATTTAACGTAAATTAGTTTTGGAAAAATACTCCATAGAG 1376
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1464 TATTTCATTGTTGACATTAAGATTTAACGTAAATTAGTTTGGGAAAAATACTCCATAGAG 1523
Query 1377 ATTTTAGAACGTTCCTTACTCTATACTACATGCAATTAGGTAACAACTCAATGTAAACAG 1436
||| || ||| ||||||| ||||||||| |||||| ||||| |||| ||| ||| ||||
Sbjct 1524 ATTCTAAAACCTTCCTTATTCTATACTAGATGCAAATAGGTGACAAATCATTGTTAACAA 1583
Query 1437 TAGACCTTTTGAAGAA-AAAATCA----TTTATGGTTGAATTTATAAGTTATA 1484
|||||||||||||||| |||| || ||| ||||||||||| |||||||||
Sbjct 1584 TAGACCTTTTGAAGAAGAAAAACAAACATTTGTGGTTGAATTTGTAAGTTATA 1636
> AT4G35920.1 | Symbols: MCA1 | PLAC8 family protein | chr4:17011788-17015256
REVERSE LENGTH=2003
Length=2003
Score = 468 bits (253), Expect = 8e-131
Identities = 601/764 (79%), Gaps = 44/764 (6%)
Strand=Plus/Plus
Query 3 GAAG-AGA-AATGGCTA-ATTCATGGGATCAGT-TAGGAGAAATTCCGTCAGTAGCTCAG 58
|||| ||| |||| | | ||||||||||| || | || || ||| ||||||| ||||||
Sbjct 410 GAAGAAGATAATGTC-ACATTCATGGGAT-GGTCTTGGGGAGATTGCGTCAGTGGCTCAG 467
Query 59 CTTACAGGCATAGACGCCCTAAAACTGATTGGAATGATAGT-AAACGCTGCGAATACAGC 117
|| || || |||| || | || ||||||| | ||||| ||| ||||||||||| ||
Sbjct 468 CTGACTGGTTTAGATGCGGTCAAGTTGATTGGTCTCATAGTCAAA-GCTGCGAATACTGC 526
Query 118 TCGAATGCACAAGAAGAATTGTCGTCAATTCGCTCACCATCTTAAGCTCATCCGTAATTT 177
| | ||||| |||||||||||||||||||||||||| ||||| || ||||| | |||||
Sbjct 527 TTGGATGCATAAGAAGAATTGTCGTCAATTCGCTCAACATCTCAAACTCATTGGGAATTT 586
Query 178 GCTAGAGCAGATAAAAAACTCTGAGATGAATCAACGT-T-CAGAGATTCTTGAGCCGCTT 235
||| || ||| | || | |||||||||||| || || | | |||| || ||||| | |
Sbjct 587 GCTTGAACAGCTGAAGATCTCTGAGATGAA-GAA-GTATCCTGAGACTCGAGAGCCTC-T 643
Query 236 C-AAGGACTTGATGATGCTCTT-AGAAGATCTTACATTTTAGTCAAAAGTTGTCA-AGAA 292
| |||| ||||| |||||| || ||||| |||||| || | ||||| || ||| | |||
Sbjct 644 CGAAGGGCTTGAGGATGCT-TTGAGAAGGTCTTACCTTCTGGTCAATAGCTGT-AGAGAC 701
Query 293 AAGAGTTATCTTTACTTGTTGGCTATGGGATGGAACATTGTTAACCAGTTTGA-AAAAGC 351
||| ||||||||||||||||||||||| |||||||||||| ||||| || | ||| |
Sbjct 702 CGGAGCTATCTTTACTTGTTGGCTATGGGTTGGAACATTGTTTACCAG-TTCAGGAAA-C 759
Query 352 -TCA-GACCGAGATTGATCTG-TTTCTCAAGATCGTTCCACTCATAAATATGG-CGGATA 407
||| || |||||||||| | ||||| |||||| | || ||||| | | ||| | ||||
Sbjct 760 ATCAGGA-TGAGATTGATC-GTTTTCTTAAGATCATACCTCTCATCACTTTGGTC-GATA 816
Query 408 ATGCTCGCATTCGGGAGAGGTTAGAAG-CTATTGAACGTGATCAGCGTGAGTACACTCTT 466
| |||||||||||||||||||| | || |||||| |||||||||||||||||||||||
Sbjct 817 ACGCTCGCATTCGGGAGAGGTTTG-AGTATATTGACCGTGATCAGCGTGAGTACACTCTG 875
Query 467 GATGAAGAGGATAAAAAGGTGCAAGATGTTATTTTGAAACAAGAATCCACTAGAGAAGCA 526
||||||||||||| | | |||||||||||||||||||||||||||||||| |||||||||
Sbjct 876 GATGAAGAGGATAGACATGTGCAAGATGTTATTTTGAAACAAGAATCCACCAGAGAAGCA 935
Query 527 GCTACATCGGTTTTAAAGAAAACGCTTTCTCGTTCCTACCCGAACATGGGGTTCTGCCAA 586
|| | || || | ||||| || || ||| | || ||||| ||| || | ||||| ||
Sbjct 936 GC-A--TCAGTACTGAAGAAGACTCTCTCTTGCTCATACCCTAACTTGCGTTTCTGTGAA 992
Query 587 GCGCTTAAAACAGAGGAGGAGAAACTGCA-ACTTGAG-TTACATCGTTCGCGGGCGCGGT 644
|| || |||||||| | ||||||||||| | | || || || || |||| || || |
Sbjct 993 GCTCTCAAAACAGAAAACGAGAAACTGCAGA-TCGAACTT-CAGCGGTCGCAGGAGCATT 1050
Query 645 ATGATGCTGA-TCAATGTGAAGTTATACAACGTTTGATTGATGTTACACAAACTGCTGCT 703
|||||| || ||| |||||||| || || ||||| |||| |||||||||| ||||||||
Sbjct 1051 ATGATG-TGGCTCAGTGTGAAGTCATTCAGCGTTTAATTGGTGTTACACAAGCTGCTGCT 1109
Query 704 TCTTCTGTTGAACCTAA-TCTTGAAAAGGTTTTGACTAAGAAAG 746
|| ||||||||| | ||| || |||| |||| |||||||
Sbjct 1110 GCT---GTTGAACCTGACTCT-GAGAAGGAGCTGACAAAGAAAG 1149
Score = 342 bits (185), Expect = 5e-93
Identities = 321/386 (83%), Gaps = 12/386 (3%)
Strand=Plus/Plus
Query 818 AGATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCAT--C--G-- 871
||||| || ||| |||||||||| || ||||| || ||||| ||||| ||| | |
Sbjct 1242 AGATCCACTTCTAATGTTTCATCTGGGCATGATCTGCTTTCACGAAGAGCATCACAGGCA 1301
Query 872 CAACACCATGAA-AATTGGCACGCCGACTTGCTGGATTGTTGTTCAGAACCTTGTCTTTG 930
|||||||||||| || ||||| ||||||| || | |||||| || ||||||| ||||||
Sbjct 1302 CAACACCATGAAGAA-TGGCATACCGACTTACTAGCTTGTTGCTCGGAACCTTCTCTTTG 1360
Query 931 CTTCAAGACATTCTTTTTCCCGTGTGGTACATTGGCAAAGATTTCTACTATGGCAACTGA 990
|||||||||||||||||||||||||||||| |||||||||||| | ||| ||| | |
Sbjct 1361 CTTCAAGACATTCTTTTTCCCGTGTGGTACTTTGGCAAAGATTGCCACTGCAGCATCCAA 1420
Query 991 CAGGCAAATCTCTTCAACTGAAGCGTGTAA-GAACCTAATGGTGTATTCTTTGATACTCT 1049
|||||| ||||||||| ||||||| ||||| || | |||||| ||||||||||||||| |
Sbjct 1421 CAGGCACATCTCTTCAGCTGAAGCATGTAATGAGC-TAATGGCGTATTCTTTGATACTTT 1479
Query 1050 CATGCTGTTGCTATACTTGCTGCATAAGGAAGAAGCTTCGAAAGACTCTGAACATAACGG 1109
| || || ||||||||||| ||| | |||| ||| || || ||||| |||||||| ||||
Sbjct 1480 CTTGTTGCTGCTATACTTGTTGCGTGAGGAGGAAACTCCGGAAGACACTGAACATCACGG 1539
Query 1110 GAGGGTGCATTGACGACTTTT-TGTCACATCTAATGTGTTGTTGTTGTGCCCTTGTCCAA 1168
|||| | ||||||||| |||| | || ||| ||||||||||||| ||||||||||| |||
Sbjct 1540 GAGGATTCATTGACGA-TTTTCTATCTCATGTAATGTGTTGTTGCTGTGCCCTTGTACAA 1598
Query 1169 GAACTGAGAGAAGTCGAGATTCGTGG 1194
|||||||||||||| |||||||||||
Sbjct 1599 GAACTGAGAGAAGTTGAGATTCGTGG 1624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73192394610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5