BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480678
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17800.1 | Symbols: ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | Ara... 989 0.0
AT4G35950.1 | Symbols: ARAC6, RAC2, ATROP5, ATRAC6, ROP5, RAC6 ... 734 0.0
> AT2G17800.1 | Symbols: ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | Arabidopsis
RAC-like 1 | chr2:7739856-7742156 FORWARD LENGTH=1265
Length=1265
Score = 989 bits (535), Expect = 0.0
Identities = 680/742 (92%), Gaps = 42/742 (6%)
Strand=Plus/Plus
Query 312 ACGTACGTAGCTCCATTTCTGGT------GG-AGAAGAAGAGAAATGAGCGCTTCGAGGT 364
||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 414 ACGTACGTAGCTCCATTTCTGGTGGAGAAGGAAGAAGAAGAGAAATGAGCGCTTCGAGGT 473
Query 365 TCATAAAGTGCGTCACCGTTGGCGACGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTT 424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TCATAAAGTGTGTCACCGTTGGCGACGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTT 533
Query 425 ACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTTCGATAACTTTAGCGCAA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ACACCAGCAACACTTTTCCTACGGATTATGTACCGACTGTTTTCGATAACTTTAGCGCAA 593
Query 485 ATGTGGTTGTTAATGGAGCCACGGTGAACCTAGGATTGTGGGATACCGCAGGGCAGGAGG 544
|||||||||||||||||||||| ||||| || || | ||||||||||||||||||||||
Sbjct 594 ATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGGGCAGGAGG 653
Query 545 ATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGACGTTTTCATCTTAGCATTCT 604
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 654 ATTATAACAGATTAAGACCTTTGAGTTACCGCGGTGCTGATGTTTTCATCTTAGCATTCT 713
Query 605 CTCTTATCAGTAAGGCTAGTTATGAGAATGTTTCCAAGAAGTGGATCCCAGAGCTGAAGC 664
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 714 CTCTTATCAGTAAGGCTAGTTATGAGAATGTCTCCAAGAAGTGGATCCCAGAGCTGAAGC 773
Query 665 ACTATGCCCCTGGTGTCCCAATAGTTCTTGTTGGAACCAAACTAGATCTTCGGGATGACA 724
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 774 ATTATGCCCCTGGTGTCCCTATAGTTCTTGTTGGAACCAAACTAGATCTTCGGGATGACA 833
Query 725 AACAGTTCTTCATTGACCACCCTGGCGCTGTACCTATTACCACTGCTCAGGGAGAGGAAC 784
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 834 AACAGTTCTTCATTGACCACCCTGGCGCTGTACCAATTACTACTGCTCAGGGAGAGGAAC 893
Query 785 TGAAGAAGCTAATTGGAGCTCCTGCATACATCGAGTGCAGTTCAAAAACACAGGAGGCAA 844
||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 894 TGAAGAAACTAATTGGAGCTCCCGCATACATCGAGTGCAGTTCAAAAACACA--AG--A- 948
Query 845 GAAACAAAAACTTCCCTTTTAACGTGAAAGGTGTATTTGATGCAGCGATCCGAGTGGTTC 904
||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 949 GAA-C------------------GTGAAAGGAGTATTTGATGCAGCGATCCGAGTGGTTC 989
Query 905 TTCAACCTCCaaagcagaagaaaaagaaaagcaaagcacaaaaagcCTGCTCCATTTTGT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TTCAACCTCCAAAGCAGAAGAAAAAGAAAAGCAAAGCACAAAAAGCCTGCTCCATTTTGT 1049
Query 965 AATTTCTCTACGTTT-TCCTA---ATCTCTCTCTGTCTCATCCA-CTCTTC---T-T-CT 1014
|||||||||||| || || || ||||||||||||||| || |||||| | | ||
Sbjct 1050 AATTTCTCTACGCTTCTCTTACGTATCTCTCTCTGTCTC-TCTGTCTCTTCCACTCTTCT 1108
Query 1015 AGTGAAGGCTTAAGAAGAAAAC 1036
||||||||||||||||||||||
Sbjct 1109 AGTGAAGGCTTAAGAAGAAAAC 1130
Score = 163 bits (88), Expect = 3e-39
Identities = 94/97 (97%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 1 GCAAAACAATCGGAGAAAGTTGATGGAGGAGATTGTTCGTATTGTGAACGCTTCAATGGC 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 4 GCAAAACAATCGGAGAAAGTTGATGGAGGAGATTGTTCGTTTTGTGAACGCTTCAATGGC 63
Query 61 ATAAATTTCCGGCCATCACATttcctctacttcctct 97
|||||||||||||||||||||||| ||||||| ||||
Sbjct 64 ATAAATTTCCGGCCATCACATTTCTTCTACTTTCTCT 100
> AT4G35950.1 | Symbols: ARAC6, RAC2, ATROP5, ATRAC6, ROP5, RAC6
| RAC-like 6 | chr4:17023837-17025863 REVERSE LENGTH=1157
Length=1157
Score = 734 bits (397), Expect = 0.0
Identities = 560/634 (88%), Gaps = 29/634 (5%)
Strand=Plus/Plus
Query 337 AGAAGAAGA-GAAATGAGCGCTTCGAGGTTCATAAAGTGCGTCACCGTTGGCGACGGAGC 395
||||||||| | ||||||||| || |||||||||||||||||||||||||| || |||||
Sbjct 337 AGAAGAAGAGGCAATGAGCGCATCAAGGTTCATAAAGTGCGTCACCGTTGGTGATGGAGC 396
Query 396 TGTTGGTAAAACCTGTTTGCTGATTTCTTACACCAGCAACACTTTTCCTACGGATTATGT 455
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 397 TGTTGGTAAAACCTGTTTGCTGATTTCTTATACCAGCAACACCTTTCCCACGGATTATGT 456
Query 456 ACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACGGTGAACCT 515
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 457 TCCGACTGTTTTCGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACGGTGAATCT 516
Query 516 AGGATTGTGGGATACCGCAGGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCG 575
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 517 TGGATTGTGGGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCG 576
Query 576 CGGTGCTGACGTTTTCA-TCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATG 634
|||||||| ||||||| |||| || |||||||| || ||||||||||||||||||||||
Sbjct 577 TGGTGCTGATGTTTTCATTCTT-GCCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATG 635
Query 635 TTTCCAAGAAGTGGATCCCAGAGCTGAAGCACTATGCCCCTGGTGTCCCAATAGTTCTTG 694
|||||||||||||||| || ||| ||||||||||||| |||||||||||||| || ||||
Sbjct 636 TTTCCAAGAAGTGGATTCCTGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTTG 695
Query 695 TTGGAACCAAACTAGATCTTCGGGATGACAAACAGTTCTTCATTGACCACCCTGGCGCTG 754
|||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||
Sbjct 696 TTGGAACCAAACTAGATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTG 755
Query 755 TACCTATTACCACTGCTCAGGGAGAGGAACTGAAGAAGCTAATTGGAGCTCCTGCATACA 814
| ||||||||||||| |||||||||||| |||||||||||||||||||| || || ||||
Sbjct 756 TCCCTATTACCACTGTTCAGGGAGAGGAGCTGAAGAAGCTAATTGGAGCGCCAGCTTACA 815
Query 815 TCGAGTGCAGTTCAAAAACACAGGAGGCAAGAAACAAAAACTTCCCTTTTAACGTGAAAG 874
||||||||||||||||| |||| || | ||| | ||||| |
Sbjct 816 TCGAGTGCAGTTCAAAATCACA--AG--A-GAA-C------------------GTGAAGG 851
Query 875 GTGTATTTGATGCAGCGATCCGAGTGGTTCTTCAACCTCCaaagcagaagaaaaagaa-a 933
| || ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 852 GCGTGTTTGATGCAGCGATCAGAGTGGTCCTTCAACCTCCAAAGCAGAAGAAAAAGAAGA 911
Query 934 agcaaagcacaaaaagcCTGCTCCATTTTGTAAT 967
| |||||||||||| ||||||||||| |||||||
Sbjct 912 A-CAAAGCACAAAAGGCCTGCTCCATCTTGTAAT 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5