BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480688
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17880.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 861 0.0
> AT2G17880.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr2:7766962-7767931 REVERSE LENGTH=970
Length=970
Score = 861 bits (466), Expect = 0.0
Identities = 648/732 (89%), Gaps = 28/732 (4%)
Strand=Plus/Plus
Query 40 TGACCCAACCCGGTTCGACTTTGCTTAACCGGAC-A-AT--A-T-A-------AATCTTC 86
|||||||||||||||||| ||||||||||||||| | || | | | |||||||
Sbjct 62 TGACCCAACCCGGTTCGATTTTGCTTAACCGGACAAGATACATTAATCTGCCTAATCTTC 121
Query 87 AATTATTTAAAAGCTAACTAAACGTTAAACGTACTAATCACTTCTTCCCTTATAAAATAA 146
||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 122 AATTATTTAAAAGCTAACTAAACGTTATACGTACTAATCACTTCTTCCCCTAT-AAATAA 180
Query 147 AGCCTCTCTAATTTCTCATCTC-CTTC-CTC-AAATCACACTGCATCACATCGGAGCTTT 203
| ||| |||||||||||||||| || | | |||||| | || |||||| |||
Sbjct 181 A-CCTTTCTAATTTCTCATCTCAAATCACACTGCATCACAAAAC-CCAAATCGGAACTTA 238
Query 204 AACCaaaaaataaaaataaaaCGCCGTCGTTTCACAATGctctcttcttcctcaagcttc 263
|||||||| | ||| | |||||||||||||||||| ||||| ||||||||| ||| ||||
Sbjct 239 AACCAAAAGACAAACA-AAAACGCCGTCGTTTCACGATGCTTTCTTCTTCCCCAACCTTC 297
Query 264 ttcgctacccca--t-t-tc-tc-tcttcttcttcttctccgccgttctctcCTGTTTCA 317
|||||||| ||| | | || || |||||||||||||||||| |||||||| || ||||
Sbjct 298 TTCGCTACTCCATTTCTCTCTTCTTCTTCTTCTTCTTCTCCGTCGTTCTCTTCTACTTCA 357
Query 318 CCACCGTCACGTGTTTTCCGGATCTCGCCGTCTCTTTCTGCAACAACCGCATCCTACACC 377
||||||||||| ||| ||||||||||||||| |||||| |||| ||||| |||||||||
Sbjct 358 CCACCGTCACGCATTTCCCGGATCTCGCCGTCGCTTTCTACAACCACCGCGTCCTACACC 417
Query 378 TGCGCCGATGATCCACCGAGATTACGCCAAATTCCGCAGCGATTTTCAGCGACCGCGTCT 437
|||||||| |||| |||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 418 TGCGCCGAAGATCTACCGAGATTACGCCAAATCCCGCAGCGATTTTCAGCAACCGCGTCT 477
Query 438 CTCTACGAGATCCTTGAAATTCCCGTCGGCTCGACGAGTCAAGAGATCAAATCGGCTTAC 497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 CTCTACGAGATCCTTGAAATTCCCGTCGGCTCGACGAGTCAAGAGATCAAATCAGCTTAC 537
Query 498 CGACGATTAGCTAGGATCTGTCATCCCGATGTAGCGGGAAATAGTCGGAATAGCTCGTCG 557
|| ||| |||| |||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 538 CGGCGACTAGCCAGGATCTGTCATCCCGATGTAGCGAGAAATAGTCGGGATAACTCGTCG 597
Query 558 GCGGACGAATTT-ATGAAGATCCACGCGGCGTATTGCACGCTTTCGGATCCCGAGAAACG 616
|||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 GCGGACGA-TTTCATGAAGATCCACGCAGCGTATTGCACGCTTTCGGATCCCGAGAAACG 656
Query 617 CGCCGTTTATGATCGGAGGAATCTTCGTCGGAGCCGGCCGTTAACTGCTGGATACGGCAG 676
|||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 657 CGCCGTTTATGATCGGAGGACTCTTCTTCGGAGCCGGCCGTTAACGGCTGGATACGGCAG 716
Query 677 TTACGGCGGACGGAATTGGGAAACTGATCAGTGCTGGTAGCGAGTTGACTCGGTTTGTCG 736
|||||| ||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 717 TTACGGTGGACGGAATTGGGAAACCGATCAGTGCTGGTAGCGAGTTGACTCGATGTGTCG 776
Query 737 AGTTGACCCAAA 748
||||| |||||
Sbjct 777 AGTTGGTCCAAA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36520224869
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5