BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480711 Length=707 Score E Sequences producing significant alignments: (Bits) Value AT2G18050.1 | Symbols: HIS1-3 | histone H1-3 | chr2:7846050-784... 1029 0.0 > AT2G18050.1 | Symbols: HIS1-3 | histone H1-3 | chr2:7846050-7846884 FORWARD LENGTH=763 Length=763 Score = 1029 bits (557), Expect = 0.0 Identities = 676/729 (93%), Gaps = 25/729 (3%) Strand=Plus/Plus Query 1 AGATAGAGACAAGACAAACAAAGCAACACTTTCACTAATCCTCTTATGGCCGAAGAGAAG 60 ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 1 AGATAGAGACAAGACAAGCAAAGCAACACTTTCACTAATCCTCTAATGGCAGAAGACAAG 60 Query 61 ACCTTGAAGAAGACTCCGGCGGCGAAGAAGCCGCGAAAACCGAAAACCACCACTCATCCT 120 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATCTTAAAGAAGACTCCGGCGGCGAAGAAGCCGCGAAAACCGAAAACCACCACTCATCCT 120 Query 121 CCATACTTTCAGATGATAAAAGAGGCTTTGATGGCTCTT-AAAGAGAAGAACGGATCAAG 179 |||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| Sbjct 121 CCATACTTTCAGATGATAAAAGAGGCTTTGATGG-TCCTGAAAGAGAAGAACGGATCAAG 179 Query 180 CCCTTACGCTATAGCTAAGAAGATAGAGGAGAAACACAAGTCTTTACTTCCAGAGAGTTT 239 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CCCTTATGCTATAGCTAAGAAGATAGAGGAGAAACACAAGTCTTTACTTCCAGAGAGTTT 239 Query 240 CCGTAAAATACTTTCTCTACAGCTTAAAAACTCTGTCACTAAAGGTAAGCTCGTGAAGAT 299 |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 240 CCGTAAAACACTTTCTCTACAGCTTAAAAACTCTGTTGCTAAAGGTAAGCTCGTGAAGAT 299 Query 300 CAGAGCCTCTTACAAGCTCTCAGATACCACCAAGATGACAACGAGGCTA-CAGGACaaga 358 |||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| Sbjct 300 CAGAGCCTCTTACAAGCTCTCAGATACCACCAAGATGATAACGAGGC-AGCAGGACAAGA 358 Query 359 agaataagaagaatatgaagcaagaagataaagagatcacaaagaGGACTAGGTCTTCTT 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 AGAATAAGAAGAATATGAAGCAAGAAGATAAAGAGATCACAAAGAGGACTAGGTCTTCTT 418 Query 419 CGACAAGGTCC-AAGAAGAGTATGTCTGTGAATAAACAAGAAAAGATGAGGAAAGCGAAG 477 |||||||| || ||||||| | |||||||||| ||||||||||||| |||||||| |||| Sbjct 419 CGACAAGG-CCTAAGAAGACTGTGTCTGTGAACAAACAAGAAAAGAAGAGGAAAGTGAAG 477 Query 478 AAGGCGAGACAGCCTAAGTCTATCAAATCTTCAGCTGGTAAGAAG--G-CCATGAAAGCT 534 |||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| Sbjct 478 AAGGCGAGACAGCCTAAGTCTATCAAATCTTCAGTTGGTAAGAAGAAGGCCATGAAAGCT 537 Query 535 TCCGCTGCTTGATCACTGAGGAGGAGGAGAAGAAGAAGAAACTGTGTGTGAATATGAAGA 594 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 538 TCCGCTGCTTGATCACTGAGGAGGAGGAGAAGAAGATGGAACTGTGTGTGAATATGAAGA 597 Query 595 ATAAGGtttttt-tt-t-tA-GTATCTGTA--A--A-T--G----G-TTTGGTGTGGTCT 638 |||||||||||| || | | ||| || | | | | | | ||||||||||||| Sbjct 598 ATAAGGTTTTTTGTTGTCTCTGTAAATGGATGATGACTTTGTTTTGGTTTGGTGTGGTCT 657 Query 639 CTTTTTGGTTTAAGAGTAAAGAGTCTTCGGATGTATAACTAGTACTACCATGTAATATAC 698 ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 658 CTTTTGGGTGTAAGAGTAAAGAGTCTTCGGATGTATAACCAGTACTACCATGTAATATAC 717 Query 699 TCGAAATAG 707 || |||||| Sbjct 718 TCTAAATAG 726 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34259688254 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5