BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480739
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1755 0.0
AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 | chr4:1... 287 2e-76
> AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7952442-7954739 REVERSE LENGTH=1492
Length=1492
Score = 1755 bits (950), Expect = 0.0
Identities = 1042/1086 (96%), Gaps = 7/1086 (1%)
Strand=Plus/Plus
Query 18 ATTTTTTCCCATTCTCTATTTTG-TTTGTACTTTTGGTCTCACTTTAAAAGATC--AAGT 74
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 210 ATTTTTTCCCATTCTCTATTTTGTTTTGTACTTTTGGTCTCACTTTAAAAGATCATAAGT 269
Query 75 TGAAAGATTTCTGCAGAGAACAATATGTTGGAAGGTCTTGTCTCACAAGAAAGCTTGTCC 134
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 270 TGAAAGATTTCTGCAGAGAACAATATGTTGGAAGGTCTTGTCTCTCAAGAAAGCTTGTCC 329
Query 135 TTAAACTCTATGGACATGTCTGTACTTGAAAGGCTTAAATGGGTGCAACAGCAACAGCAG 194
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 330 TTAAACTCTATGGACATGTCTGTACTTGAAAGGCTTAAATGGGTACAACAGCAACAACAG 389
Query 195 CAACTGCAACAAGTTGTGTCCCAGAGCAGTAATAATTCACCTGAACTTCTTCAGATACTA 254
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 390 CAACTGCAACAAGTTGTGTCCCATAGCAGTAATAATTCACCTGAACTTCTTCAGATACTT 449
Query 255 CAGTTCCATGGAAGCAACAATGATGAGTTGTTGCAGAGTAGTTTCAGCCCATTTCAAATG 314
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 450 CAGTTCCATGGAAGCAACAATGATGAGTTGTTGGAGAGTAGTTTCAGCCAATTTCAAATG 509
Query 315 CTTGGATCTGGTTTTGGACCAAACTATAACATTGGTTTTGGTCCTCCACATGAAGCCATT 374
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 510 CTTGGATCTGGTTTTGGACCAAACTATAACATGGGTTTTGGTCCTCCACATGAATCCATT 569
Query 375 TCAAGAACAAGTAGCTGCCATATGGAACCAGTGGATACAATGGAGGTTTTGTTGAAGACT 434
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 570 TCAAGAACAAGTAGCTGCCATATGGAACCTGTGGATACAATGGAGGTTTTGTTGAAGACC 629
Query 435 GGTGAAGAAAACAGAGCCATTGCCTTgaaaaacaagagaaaaccagaggttaagaaaagg 494
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct 630 GGTGAAGAAACCAGAGCCGTTGCCTTGAAGAACAAGAGAAAACCAGAGGTTAAGACAAGG 689
Query 495 gaagaggaaaagacagagaagaagatcaaagtagaggCTGAGACAGAGTCAAGCATGAAA 554
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GAAGAGCAAAAGACAGAGAAGAAGATCAAAGTAGAGGCTGAGACAGAGTCAAGCATGAAA 749
Query 555 GGAAAATCAAACATGAGAAACACTGAAGCATCTTCCGACACTTCAAAGGAGACATC-AAA 613
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 750 GGAAAATCAAACATGGGAAACACTGAAGCATCTTCAGACACTTCAAAGGAGACATCGAAA 809
Query 614 GAAAGCTTCAGAGATTCAAAAATTAGATTATATCCACGTGAGAGCTCGTCGAGGCCAAGC 673
| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 810 G-GAGCTTCAGAGAATCAGAAATTAGATTATATCCACGTGAGAGCTCGTCGAGGCCAAGC 868
Query 674 CACTGATAGACACAGCTTAGCTGAAAGGGCGAGAAGAGAAAAGATCAGCAAGAAGATGAA 733
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 869 CACTGACAGACACAGCTTAGCAGAAAGGGCGAGAAGAGAAAAGATCAGCAAGAAAATGAA 928
Query 734 ATATCTGCAAGATATTGTGCCTGGATGCAACAAGGTCACAGGAAAAGCTGGTATGCTTGA 793
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 929 ATATCTGCAAGATATTGTGCCTGGATGCAATAAGGTCACAGGAAAAGCTGGTATGCTTGA 988
Query 794 TGAGATCATCAATTATGTTCAATGTCTCCAAAGACAAGTCGAATTCTTGTCGATGAAACT 853
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 989 TGAGATCATCAATTATGTTCAATGTCTCCAAAGACAAGTCGAGTTCCTGTCGATGAAACT 1048
Query 854 CGCTGTCTTGAACCCGGAACTAGAGCTTGCCGTGGAAGATGTATCTGTAAAACAGTTTCA 913
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1049 TGCTGTCTTGAACCCGGAACTAGAGCTTGCCGTGGAAGATGTATCCGTAAAACAGTTTCA 1108
Query 914 GGCTTACTTTACAAATGTTA-CTGCTTCAAAGCAATCAATAATGGTTGATGTGCCATTGT 972
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1109 GGCTTACTTTACAAATG-TAGTTGCTTCAAAGCAATCAATAATGGTTGATGTGCCATTGT 1167
Query 973 TTCCGTTAGACCAGCAAGGATCTCTAGATTTGTCTGCCATAAACCCGAATCAAACGACAT 1032
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1168 TTCCGTTAGACCAGCAAGGATCTCTAGATTTGTCTGCGATAAACCCGAACCAAACGACAT 1227
Query 1033 CTATTGAAGCTCCATCTGCAAGCTGGGAAATTCAGTCACAAAGTCTCTACAACACATCTA 1092
|||| ||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 1228 CTATCGAAGCTCCATCTGGAAGCTGGGAAACTCAATCACAGAGTCTCTACAACACATCTA 1287
Query 1093 GCCTCG 1098
||||||
Sbjct 1288 GCCTCG 1293
> AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17243583-17245296
FORWARD LENGTH=1362
Length=1362
Score = 287 bits (155), Expect = 2e-76
Identities = 269/324 (83%), Gaps = 7/324 (2%)
Strand=Plus/Plus
Query 606 ACATCAAAGAAAGCTTCAGAGATTCAAAAATTAGATTATATCCACGTGAGAGCTCGTCGA 665
||| || ||| | ||||||| ||||| ||| |||||| || || || || ||| | |||
Sbjct 493 ACA-CAGAGACATCTTCAGAAATTCAGAAACCAGATTACATTCATGTTAGGGCTAGACGA 551
Query 666 GGCCAAGCCACTGATAGACACAGCTTAGCTGAAAGGGCGAGAAGAGAAAAGATCAGCAAG 725
|| ||||||| || ||||| |||||||| || ||||| |||||||||||||| ||||||
Sbjct 552 GGTGAAGCCACCGACAGACATAGCTTAGCAGAGAGGGCAAGAAGAGAAAAGATAAGCAAG 611
Query 726 AAGATGAAATATCTGCAAGATATTGTGCCTGGATGCAACAAGGTCACAGGAAAAGCTGGT 785
|||||||||| ||| ||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 612 AAGATGAAATGTCTACAAGATATTGTTCCTGGATGCAACAAAGTTACTGGAAAAGCTGGT 671
Query 786 ATGCTTGATGAGATCATCAATTATGTTCAATGTCTCCAA-AGACAAGTCGAATTCTTGTC 844
|||||||||||||||||||| ||||| |||| ||| ||| | ||||||||| ||||||||
Sbjct 672 ATGCTTGATGAGATCATCAACTATGTCCAATCTCTGCAACA-ACAAGTCGAGTTCTTGTC 730
Query 845 GATGAAACTCGCTGTCTTGAACCCGGAACTAGAGCTTGCCGTG--GAAGATGTATCTGTA 902
|||||||||| ||||| | || || ||||| ||| | | | | || ||| |||| | |
Sbjct 731 GATGAAACTCTCTGTCATAAATCCAGAACTTGAG-T-GTCATATCGATGATTTATCCGCA 788
Query 903 AAACAGTTTCAGGCTTACTTTACA 926
|||||||||||||||||||| |||
Sbjct 789 AAACAGTTTCAGGCTTACTTCACA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72238584255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5