BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480792
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16210.1 | Symbols: | Transcriptional factor B3 family prot... 1454 0.0
AT5G46915.1 | Symbols: | transcriptional factor B3 family prot... 573 1e-162
> AT2G16210.1 | Symbols: | Transcriptional factor B3 family protein
| chr2:7026763-7029054 REVERSE LENGTH=1170
Length=1170
Score = 1454 bits (787), Expect = 0.0
Identities = 981/1073 (91%), Gaps = 20/1073 (2%)
Strand=Plus/Plus
Query 18 AAAGCTTTGTGGGTGAGCTTTAATAAGAGAGATGGCTAGGAACGCTGATTATCTTCGGTG 77
|||||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||||
Sbjct 31 AAAGCTTTGTGGGTGAGCTTGAATTAGAGAGATGGCTACGAACGCTGGTTATCTTCGGTG 90
Query 78 CAAAGAAGAACGCAAGAACGAAAGCTTCTTCAAGGTTGTTCATAGTATAAATATTTCTTC 137
||||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct 91 CAAAGAAGAGCGCAAGAATGAAAGCTTCTTCAAGGTTGTTCAGAGTATAAATGTTTCTTC 150
Query 138 TGAAAACATGAGAGCACTTCCTCATGACTTTGT-GAGAATCTTCTCCGATAAAGAGCTCT 196
||||||| |||||||||||| ||||||||| | ||||| |||| |||| ||||||||||
Sbjct 151 AGAAAACAAGAGAGCACTTCCACATGACTTT-TCGAGAAGCTTCACCGACAAAGAGCTCT 209
Query 197 CACGTAAGATAAAGATAAGAGCGCAATGGGGAAGCTCTTGGGAAGTAGCAATCTCTAAAA 256
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 210 CACGTAAGATGAAGATAAGAGCGCAATGGGGAAACTCTTGGGAAGTAGGAATCTCTAAAA 269
Query 257 ACCCGAGATTTTACTTCATGGAGAAGCCCGGCTGGGAGAAGTTTGTTAGGGACAATGCTT 316
|||| ||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 270 ACCCTAGATTTTACTTCATGGAGAAGTCTGGCTGGGAGAAGTTTGTGAGGGACAATGCTT 329
Query 317 TGGGAAACAGTGAGTTTA-TTACCTTCACTCACAAAGGAAAAATGCACTTTACTGTGAAC 375
|||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 330 TGGGAAACAGTGAG-TTACTTACCTTCACTCACAAAGGGAAAATGCACTTTACCGTGAAC 388
Query 376 ATCTTTAAGCAAGATGGGAAAGAGATGATGCAACCTCCAAAATCCAGAGCCTTCTTGGCT 435
|||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct 389 ATCTTTAAGCTAGACGGGAAAGAGATGATGCAACCTCCACAATCCAGATCCTTCTTTGCT 448
Query 436 TCTTCAAGTCGTATCAAAACAGAACAAGAGGAAGATGAC-TTGAAGGAAGAGGTAGTGGT 494
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 449 TCTTCAAGTCGTATCAAAACAGAACAAGAGGAAAATGACATT-AAGGAAGAGGTAGTGGT 507
Query 495 ATCTTCTAACCGTGGCCCGAAAACCGCAGCTGAATCTAATGGAAGAAAGCTCAACCTTGG 554
||||||||||||||||| || ||| |||||||||||||| ||||||||||||||||||||
Sbjct 508 ATCTTCTAACCGTGGCCAGACAACTGCAGCTGAATCTAAAGGAAGAAAGCTCAACCTTGG 567
Query 555 GAAGAAGGCAGCTAAGGAATCCCAAAATTCTAAAAGGACCGAGAAAGTGGTTAAAGCACG 614
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 568 GAAGAGGGCAGCTAAGGAATCCCAAAGTTCTAAAAGGACCGAGAAAGTGGTTAGAGCCCG 627
Query 615 AAGAGATTACGCTGGTGCATCTTCATCTACTGCTGCAGAATTCACCATCTTCTTCAAGCA 674
||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 628 AAGTGATTACGCTGGTGCCTCTTCATCTACTGCTGCAGCATTCACCATCTTGTTCAAGCA 687
Query 675 AGGATATCTCATATTCCTGAGGATCCCGAATACTGT-TGCTAAGGATCTTA-TGCCGGAT 732
|||||||||| |||||||||||||||||||| |||| | | ||||||| | ||||||||
Sbjct 688 AGGATATCTCGTATTCCTGAGGATCCCGAATTCTGTAT-CGAAGGATC-AAGTGCCGGAT 745
Query 733 GAGAAAACAATATTCAAGATCCATCACCCAAATGGGAAGAAATCATGGAATGTGGTTTAT 792
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 GAGAAAACAGTATTCAAGATCCATCACCCAAATGGGAAGAAATCATGGAATGTGGTTTAT 805
Query 793 CTGGTGAGGTTTGGAGCTTTCTCTGGTGGATGGCGACGTTTGGTTAAAGAGTATCCCCTT 852
|||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 806 CTGGAGAGGTTTGGAGCTTTCTCTGGTGGATGGCGTCGTGTGGTTAAAGAGTATCCCCTT 865
Query 853 GTTGTTGGGGATACCTGCAAATTTTCATTCATCAAACCAGATGAGCTACTTCTAGTTGTC 912
| |||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||
Sbjct 866 GCTGTTGGTGATACCTGCAAATTCACATTCATCAAACCAAAGGAGCTACTTCTAGTTGTC 925
Query 913 TCCAAACCCTAATGATGATGGATGTTAGGGTATCTTGGAGAAGAAGTTACTGA-GTAAAA 971
||||||||||||||| ||||||||| ||||| ||||||||||||||||||| | ||||||
Sbjct 926 TCCAAACCCTAATGAGGATGGATGTGAGGGTGTCTTGGAGAAGAAGTTACT-ACGTAAAA 984
Query 972 TAACTGTGTTGTCTTAAGTTTTATGTTACGAGTTTAAGTT-GG------CATCTGAACTT 1024
|||| | |||||||||||||||||| | || |||| ||| || ||| |||||||
Sbjct 985 GAACTTTATTGTCTTAAGTTTTATGTAATGACTTTA-GTTTGGTTTTTGCATATGAACTT 1043
Query 1025 TGCTTTTTGTCTATCAGATGTATCTCTGTAGCTTAATATGTTGGGCCCAATTT 1077
||||| |||| |||| |||||| |||||||||||||||| ||| | |||||||
Sbjct 1044 TGCTTCTTGTTTATCGGATGTAGCTCTGTAGCTTAATATTTTGAGACCAATTT 1096
Score = 75.0 bits (40), Expect = 1e-12
Identities = 46/49 (94%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1076 TTGAATAACCGTAGAATCAAATTATCAACTCAATGGTAACTTTTTATTG 1124
|||||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1120 TTGAATGACCCTAGAATCAAATTATCAACTCAATGGTAACCTTTTATTG 1168
> AT5G46915.1 | Symbols: | transcriptional factor B3 family protein
| chr5:19051568-19053200 REVERSE LENGTH=867
Length=867
Score = 573 bits (310), Expect = 1e-162
Identities = 494/578 (85%), Gaps = 31/578 (5%)
Strand=Plus/Plus
Query 388 GATGGGAAAGAGATGATGCAACCTCCAAAATCC-AGAGCCTTCTTGGCTTCTTCAAGTCG 446
|||||||| |||||||||||||||||| || || |||||||||||||| |||||||||||
Sbjct 283 GATGGGAAGGAGATGATGCAACCTCCACAA-CCTAGAGCCTTCTTGGCATCTTCAAGTCG 341
Query 447 ---T-----A-TCAAAACAGAACAAGAGGAAGATGACTTGAAGGAAGAGGTAGTG-GT-A 495
| | ||| ||||||||||| |||||||||| |||||||||||| ||| | |
Sbjct 342 TATTAGAAGATTCAGAACAGAACAAGGGGAAGATGACAAGAAGGAAGAGGTGGTGTCTGA 401
Query 496 -TCTTCTAACCGTGGCCCGAAAACCGCAGCTGAATCTAATGGAAGAAAGCTCAACCTTGG 554
|| ||| ||||||| || |||||||||||||||| |||||| |||||||| |||||
Sbjct 402 GTCAAGTAATCGTGGCCGGACAACCGCAGCTGAATCTGTTGGAAGGAAGCTCAAACTTGG 461
Query 555 GAAGAAGGCAGCTAAGGAATCCCAA-AATTCTAAAAGGACCGAGAAAGTGGTTAAAGCAC 613
||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||| |
Sbjct 462 GAAGAAGGCAGCTGAGGAATCCCAAGAA-TCTAAAAGGACCGAGAAAGTGGTTAGAGCCC 520
Query 614 GAAGAGATTACGCTGGTGCATCTTCATCTACTGCTGCAGAATTCACCATCTTCTTCAAGC 673
|||||||| | || ||||| |||||||||||||||| ||||||||| | | ||| |||
Sbjct 521 GAAGAGATGAGGCAGGTGCCTCTTCATCTACTGCTGTAGAATTCACGGCCGTATTCCAGC 580
Query 674 AAGGATATCTC-ATATTCCTGAGGATCCCGAA-TACTGTTGCTAAGGATCTTATGCCGGA 731
|| ||||||| | | | |||||||| ||||| | ||| | |||||||| |||||||
Sbjct 581 CAGCATATCTCTACAAT-CTGAGGAT-CCGAAGTTCTG-T--TAAGGATCAAATGCCGGT 635
Query 732 TGAGAAAACAATATTC-AAGATCCATCACCCAAATGGGAAGAAATCATGGAATGTGGTTT 790
|||||||||||||||| ||| ||||||| |||||||||||||||| ||||||||||| |
Sbjct 636 TGAGAAAACAATATTCAAAG-TCCATCATCCAAATGGGAAGAAATTTTGGAATGTGGTGT 694
Query 791 ATCTGGTGAGGTT-TGGAGCTTTCTCTGGTGGATGGCGACGTTTGGTTAAAGAGTATCCC 849
|||||| || ||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 695 ATCTGGGGA-GTTATGGAGCTTTCTCTGGTGGATGGCAATGTTTGGTTAAAGAGTATCCC 753
Query 850 CTTGTTGTTGGGG----ATACCTGCAAATTTTCATTCATCAAACCAGATGAGCTACTTCT 905
||||||||||||| |||||||||| ||| ||||||||||||| || |||||||||||
Sbjct 754 CTTGTTGTTGGGGATATATACCTGCAAGTTTACATTCATCAAACCGGAGGAGCTACTTCT 813
Query 906 AGTTGTCTCCAAACCCTAATGATGATGGATGTTAGGGT 943
|||||||||||||||||||||||||||||||| |||||
Sbjct 814 AGTTGTCTCCAAACCCTAATGATGATGGATGTGAGGGT 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55120198410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5