BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480799
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16365.1 | Symbols: | F-box family protein | chr2:7074362-7... 1984 0.0
> AT2G16365.1 | Symbols: | F-box family protein | chr2:7074362-7079519
FORWARD LENGTH=2805
Length=2805
Score = 1984 bits (1074), Expect = 0.0
Identities = 1334/1456 (92%), Gaps = 31/1456 (2%)
Strand=Plus/Plus
Query 1 TTCTTTGGACAGTTTACCTCCACGTATTCGTCTCTGGTGATTTGATCAAAGCCTCTGGAG 60
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 50 TTCTTTGGACAGTGTACCTCCACGTATTCGTCTCTGGTGATTTAATCAAAGCCTCTGGAG 109
Query 61 AAGATCTCT--GTAGGTA-TAATGTCTGAAGAGGTTATGGTTTTGGGTAAGGGTAACAAA 117
||||||| | ||| ||| |||||||||| | ||||||||||||||||| |||||||||
Sbjct 110 AAGATCTGTAGGTACGTACAAATGTCTGAACATGTTATGGTTTTGGGTAAAGGTAACAAA 169
Query 118 GGAATCAGCAAGAATTCCTCAGCCCATCCATATGAATCAGCTTGGTTAGGTCGTTGGACT 177
||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 170 GGAATCAGCAAGAATTCTTCAGTCAATCCATATGAATCAGCTTGGTTAGGTCGTTGGACT 229
Query 178 CAGTCAGGTAGTGAAGTGAAGTTTCATGATGGTGAAG-CCAACTGCTCTAAGGAGTTGAT 236
|||||||||||||||||||||||||||||||||| || |||| ||||||||| |||||||
Sbjct 230 CAGTCAGGTAGTGAAGTGAAGTTTCATGATGGTG-AGACCAATTGCTCTAAGCAGTTGAT 288
Query 237 TAGGCCTGAAGAAGAGAATCATGGTGTCGAGGTCTTGCCGTTTCCTATGTTCAAGGTTTC 296
|| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 289 AAGACCTGAAGATGAGAATCATGGAGTCGAGGTCTTGCCGTTTCCTATGTTCAAGGTTTC 348
Query 297 TCAAAAGAGAGAG------------ACTACTACTAAGCCGTCTTTCCATGGTGATGTGGG 344
||||||||||||| ||||||||||| ||||||||||||| ||||| ||
Sbjct 349 TCAAAAGAGAGAGACTACTACTACTACTACTACTAAACCGTCTTTCCATGAAGATGTTGG 408
Query 345 TTCAAGCTCGAAAGCTATGGTTAATAGAATGCCATGGATGTATCCGCAAGGAGAGAATTT 404
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 409 TTCAAGCTCGAGAGCTATGGTTAATAGAATGCCCTGGATGTATCCGCAAGGAGAGAACTT 468
Query 405 CAGTTCGAGTAACCGTCTTGATTTCCCAGTTCAAGAAAAGACTACTCAAAACTTGCTAGA 464
|||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 469 CAGTTCTAGTAACCGTCTTGACTTCCCAATTCAAGAAAAGACTACTCAAAACTTGCTAGA 528
Query 465 GTTGATAAGACCGGTGAGGATTTACGCAACGGTTGATTCGGTTAACTTGCCTGAAGAAGA 524
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 529 GTTGATAAGACCGGTGAGGATTTACGCAACGGTTGATTCTGTTAACTTGCCTAAAGAAGA 588
Query 525 TGGTCATCAGCTGTTGAAGGGGTCGACGGTTTCCATGAAACTGAAAGGGAAGATTTTTGG 584
| |||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 589 TAGTCATCAGTTATTGAAGGGGTCTACAGTTTCCATGAAACTGAAAGGGAAGATTTTTGG 648
Query 585 TGGGTATCTTGATCTATTTCCTAATCAAGATCACTGCCATAATAAAGGAGGAGCAAGGCT 644
||| ||||||||||| ||||||||||||||||||| ||| |||| |||||||| ||||||
Sbjct 649 TGGATATCTTGATCTGTTTCCTAATCAAGATCACTCCCACAATAGAGGAGGAGTAAGGCT 708
Query 645 GCAGTCTCTAGAAAGCTCAAAAGACAC-CGAAGAAGATGGGCCGAGAAAAAATGAATCAT 703
||||||||||||||||||||| || || | |||||||||| |||||||||||||||||||
Sbjct 709 GCAGTCTCTAGAAAGCTCAAAGGATACTC-AAGAAGATGGACCGAGAAAAAATGAATCAT 767
Query 704 CTGCAGAAACTGATACCTTGGAAATGGATAGACTTCAGACGATACATATTTCTGGCTCCA 763
| ||||| ||| ||||||| |||||||||||||||||||| |||||| |||| |||||||
Sbjct 768 CGGCAGAGACTAATACCTTAGAAATGGATAGACTTCAGACTATACATCTTTCCGGCTCCA 827
Query 764 TTTCTTCGTCGTCAACTAAGGGCAAAGGAATAAAAGG-TGATTCAGCCATTCCCAGGACC 822
|||||||||| ||||||||||| |||||||||||||| | | ||||||||||| ||||||
Sbjct 828 TTTCTTCGTCATCAACTAAGGGAAAAGGAATAAAAGGCT-ACTCAGCCATTCCAAGGACC 886
Query 823 GAAATACCCGACATGAATGAAGAACCACCT-TTGGTTCCGGATAGAGAGAATTCAGTAGA 881
|||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 887 GAAATACCTGACATGAATGAAGAACCACCTCTTG-TTCCGGATAGAGAGAATTCAGTAGA 945
Query 882 TGGACATCAGGGAGAAACAAGCAATTCAGCTACTCAAAGTATGAATGTGGAACACTTTCT 941
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 946 TGGACATCAGGGAGAAACAAGCAACTCGGCTACTCAAAGTATGAATGTGGAACACTTTCT 1005
Query 942 GTCCAGAGACTGCAAACGTGTGAGGTTGGAACCAGAAGTAGAAGCCAGCAGTAGATGGGT 1001
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1006 GTCCAGAGATTGCAAACGTGTGCGGTTGGAACCAGAAGTAGAAGCCAGCAGTAGATGGGT 1065
Query 1002 CAAGCGTCTGAAAACAAGCGCCTC-GACCTCCAGCAGACATGATGAAACCAAGAGTCTGA 1060
|||||||||||| |||||| |||| || ||||| || | | || | | || | ||
Sbjct 1066 CAAGCGTCTGAAGACAAGCCCCTCAGAT-TCCAGT-GAAACCAAGAG-C-ATGA-T--GA 1118
Query 1061 ATATTAAAGAAGCATCACTGGGACAAAAAGGGAATAATAACCTATTCCTTGAAATCTTGA 1120
| || |||||||||||||||||| |||||| ||| ||||| ||||||||||| |||||||
Sbjct 1119 AGATGAAAGAAGCATCACTGGGAGAAAAAGAGAACAATAATCTATTCCTTGAGATCTTGA 1178
Query 1121 AGTCTGGAATCAACAATCTCCAACCAAGAAATCAAGAACCCGTCGTTTCACAAAGCAATG 1180
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1179 AGTCCGGAATCAACAATCTCCAACCGAGAAATCAAGAACCCGTCGTTTCACAGAGCAATG 1238
Query 1181 ATCTGAAACAGGGAGGAGATGACATTACACTTCTGCATCCATGGATCCAGAGATGGTGCA 1240
|||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1239 ATCTGAGACAAGGAGGAGATGACATTACACTTCTGCATCCATGGATCCAGAGGTGGTGCA 1298
Query 1241 AGAAGAAATCTACATCAACAGATCAACCAGGAGGGCAAGAAGTTAGCTTTGAGCCAGAGA 1300
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1299 AGAAGAAAACTACATCAACAGATCAACCAACAGGGCAAGAAGCTAGCTTTGAGCCAGAGA 1358
Query 1301 GCCAGAAGGAGTTCGAGAAGAAACAGTATCCGAGTATTGCAGCCATGGCATTGATGGGGA 1360
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GTCACAAGGAGTTCGAGAAGAAACAGTATCCGAGTATTGCAGCCATGGCATTGATGGGGA 1418
Query 1361 AGGCTCTGAGCGGTTTAAACCCATATGGTCTGAGAAAAACCAACTCTCTCATGGTCTGGA 1420
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1419 AGGCTCTGAGCGGTTTAAACCCATATGGTCTTAGAAAGACCAACTCTCTCATGGTTTGGA 1478
Query 1421 ATGCAAGGGATTTGAG 1436
||||||||||||||||
Sbjct 1479 ATGCAAGGGATTTGAG 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81023679630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5