BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480812
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16485.1 | Symbols: | nucleic acid binding;zinc ion binding... 1936 0.0
> AT2G16485.1 | Symbols: | nucleic acid binding;zinc ion binding;DNA
binding | chr2:7136944-7145222 REVERSE LENGTH=5647
Length=5647
Score = 1936 bits (1048), Expect = 0.0
Identities = 1659/1928 (86%), Gaps = 145/1928 (8%)
Strand=Plus/Plus
Query 1 ATGGATTCTGATTCTGAGAGAGCTTCTCTCGAGTCGATTAAAGATGATTCTGAATGTCTT 60
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||
Sbjct 1 ATGGATTCTGATTCTGAGAGAGCTTCTCTGGAGTCGATTAAAGATAATTCTGAATGTGTT 60
Query 61 CATGTTTCGAACGAACCTAGTCTCACGGGAACATGCGGTGATTCGTTTGTTGGAGAGGAA 120
|||||||| |||||||||| |||||||| |||||||| |||||||| ||||
Sbjct 61 CATGTTTCCAACGAACCTAATCTCACGGCAACATGCGTTGATTCGTCTGTT--------- 111
Query 121 GAAGGAGGAGGAGGCGACGGAGTTACGGATGTGAATTCGTCCGCCGCGGTGTCAGAGCTC 180
||| ||||| | |||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 112 ---GGA-GAGGA----A-GGAGTTACGGATGTAAATTCGTCCGCCGCTGTGTCGGAGCTC 162
Query 181 GCGCCTCCGGAGCAAGGAGAAGGTGCGGTTTTGAATTCCGTCTCTGAGATCAGTGATGTG 240
| ||| ||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 163 GTGCCGCCGGAGCAAGGAGAAGGTGCGCTTTTGAATTCCGTCCCTGAGATC----A---- 214
Query 241 GTTGAAAGGGGGATTCCTGTTGATGTCGTTTCCTCGGTAGGTGGAGGAGGAGAAGAAAAT 300
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 215 G-TGAAAGGGGGATTCCTGTTGATGTCGTTTCCTCGGTAGATGGAGGAGGAGAAGAAAAT 273
Query 301 GCAGCTTTTAATGTTCAGGAGATGGATTCGGTTGGTGGTGACGCTGCGGCGGTGGAGGTG 360
|||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||| |
Sbjct 274 GCAGCTTTTAATATTCAGGAGATTGATTCTGTTGGCGGTGACGCTGCGGCGGTGGAGGAG 333
Query 361 GTTCCTCTGAAACCGTCTTCGGTGGTTGGGGAAGGGGGAGAAGAGGAAGGTGCGGCTTTA 420
|||||||||||| |||||||||||||||||||||| |||||||||||| || ||||| |
Sbjct 334 GTTCCTCTGAAATCGTCTTCGGTGGTTGGGGAAGGAAGAGAAGAGGAAGCTGGGGCTTCA 393
Query 421 AT--T---GGCAG-TGA--TT-CA-C--AAGCTAATTCGTCAGGAGATAGGCTTGAGGGA 468
|| | | || || || | | ||||||||| |||||||||||||||||||| |
Sbjct 394 ATCGTCAAAGAAGAGGATTTTGTAGCTGAAGCTAATTTGTCAGGAGATAGGCTTGAGGAA 453
Query 469 AAC----AA------A--G-A-AA-AACCTCCATCACATGA---C-C-----------TA 498
||| || | | | || ||||| |||||||||| | | ||
Sbjct 454 AACAAAGAAGTTTCCATGGAAGAAGAACCTTCATCACATGAGCTCTCGGTTTGTGAGGTA 513
Query 499 AACGGAGTTGATTCTCTGAATG-TCGAGGAAAAGAGAGATGAAGGTGGACATG-TAGTTT 556
||||||||||||||| |||||| | |||||||| ||||| | ||||| ||| | ||||||
Sbjct 514 AACGGAGTTGATTCTTTGAATGAT-GAGGAAAATAGAGAGGTAGGTGAACA-GATAGTTT 571
Query 557 GTGGAAGTATGGCTGTTGAGGAGATAGAGAATGATTTAGGGCAGAACACAGAGTCTAAAA 616
|||||||||||| || |||||||||||||| |||||| |||||||||||
Sbjct 572 GTGGAAGTATGGGTGGTGAGGAGATAGAGAGTGATTT------------AGAGTCTAAAA 619
Query 617 TGGAAAAGGTAGATGTGATGGAGGAGGAAACTACAGCGCAAGCTGCTTCCTTGGTTAATG 676
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 620 AGGAAAAGGTAGATGTGATAGAGGAGGAAACCACAGCGCAAGCTGCTTCCTTGGTTAATG 679
Query 677 AC-ATTGAAATTCCTGATGATAAAGAGGTAGCTTGTGTGGCTGGGTTTACAGAAATTCCC 735
| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 680 -CAATTGAAATTCCTGATGATAAAGAGGTAGCTTGCGTGGCTGGGTTTACGGAAATTTCC 738
Query 736 ACTCAAGATAAAGGGGTAGACGATTCAGTGCGTAACTCAGGAAGTGAATTTGTAGAAGAA 795
|||||||||||||| ||||||| ||| | | || | || | | ||| |||| |||
Sbjct 739 TCTCAAGATAAAGGGTTAGACGAATCA--G-G-AAAT--GG-A-T---TTT-TAGATGAA 786
Query 796 GAGCCAGTGAAAGAGTTGCAAATAGGTGAAGGAGCTAAAGATCTGACAGATGGAGATGCA 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GAGCCAGTGAAAGAGTTGCAAATAGGTGAAGGAGCTAAAGATCTGACAGATGGAGATGCA 846
Query 856 AAAGATGGTGTCGATGTTACAGAAGATGCAATGGATATACAGGTATTGAAGAAATC-AGA 914
||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 847 AAAGAAGGTGTGGATGTTACAGAAGATGAAATGGATATACAGGTATTGAAGAAATCTA-A 905
Query 915 GGAGGAAGAAAA----G---G---T--TG-A-T-G-G-T-G---CTAAGCCCCAAGAGGT 953
|||||||||||| | | | || | | | | | | ||| || || ||||||
Sbjct 906 GGAGGAAGAAAAGGTTGATAGTACTACTGAATTAGAGATAGAAACTATGCGCCTAGAGGT 965
Query 954 AG-ATGATGTGGCTACTGAGATCTCCGACAAAATTGAGGTTTCAGTGGATATATCATCAG 1012
| |||| |||||||||||||| |||||| ||| | | | | |||||||||||
Sbjct 966 -GCATGACGTGGCTACTGAGATGTCCGAC-AAA---A-----C--T-GTTATATCATCAG 1012
Query 1013 CTGTTGTTACTCAGTTTGCTGGGGAAACAAGTAATGATAAGGAAACTGTTATGGATGATG 1072
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CTGTTGTTACTCAGTTTACTGGGGAAACAAGTAATGATAAGGAAACTGTTATGGATGATG 1072
Query 1073 GCAAAGAAGATGTTGAGAAGGATTCAGAAGCTGGTAAATCACTGGACATACATGTACCAG 1132
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TCAAAGAAGATGTTGACAAGGATTCAGAAGCTGGTAAATCACTGGACATACATGTACCAG 1132
Query 1133 AGGCTGTAGAAGAAGTAGAGTCAGACGTTAAGTATAGTGCTGGGATAGAGAAAGAAGGCG 1192
||||| |||||||||||| |||| ||||| || ||| ||||||||||||||||||||
Sbjct 1133 AGGCTACAGAAGAAGTAGACACAGATGTTAATTACGGTGTTGGGATAGAGAAAGAAGGCG 1192
Query 1193 ATGGGATGGGTGGTGCGGGAGAAGTACGGCAGACAGTGGATATGGAGGAAATTCGAGAAG 1252
||||| |||||||||||| ||||| | |||||||||| ||| ||||||||||||||||||
Sbjct 1193 ATGGGGTGGGTGGTGCGGAAGAAGCAGGGCAGACAGTTGATTTGGAGGAAATTCGAGAAG 1252
Query 1253 AAACCCAAGAACTATCTGAGGAACTGGCTAAAGTAGATGAGACAAAGATTTCTGAAGTGT 1312
||| ||||||||| ||| ||||||||||| |||||||||| || |||||||||||| |||
Sbjct 1253 AAAACCAAGAACTGTCTAAGGAACTGGCTCAAGTAGATGAAACCAAGATTTCTGAAATGT 1312
Query 1313 CAGAAGAAACGGTGACAACAATCAGGGGTGAGGATCAGGAGAAAGATGATGACATGACTG 1372
| |||| ||||| ||||| |||| | ||||||||||||||||||||| | |||||||
Sbjct 1313 CGGAAGTAACGGAGACAATGATCAAAGATGAGGATCAGGAGAAAGATGACAATATGACTG 1372
Query 1373 ATTTGGCGGAGGATGTGGAAACCCATGGAGACTCCCCAGTAGCTGGTATTGAGGAGGGAA 1432
||||||||||||||||||||| |||| |||| ||| ||||||||| ||||||||||||||
Sbjct 1373 ATTTGGCGGAGGATGTGGAAAACCATAGAGATTCCTCAGTAGCTGATATTGAGGAGGGAA 1432
Query 1433 GGGAAGATCATGAAGATATGGGAGTGACAGAGACACAGGAGGAGACTGTTATGGGTAAAG 1492
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1433 GGGAAGATCATGAAGATATGGGAGTGACAGAGACACAGAAGGAGACTGTTTTGGGTAAAG 1492
Query 1493 TAGACGGAACAAAAATTGCTGAAGTGTCAGAAGAAACAGAGACAAGGATTGAAGATGAGG 1552
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1493 TAGACAGAACAAAAATTGCTGAAGTGTCAGAAGAAACAGACACAAGGATTGAAGATGAGG 1552
Query 1553 ATCAGGAAAAAGATGATGAGATGACTGATGGGGCGGAGGATGTGAAAACGCATGGAGACT 1612
||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1553 ATCAGGAGAAAGATGATGAGATGACTGATGTTGCGGAAGATGTGAAAACGCATGGAGACT 1612
Query 1613 CTTCAGTAGCTGATATTGAAGAGGGGAGGGAAAATCATGAAGAGATGACAGAGACACAGG 1672
| ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct 1613 CCTCAGTAGCTGATATTGAAGAGGGAAGGGAAAGTCAAGAAGAGATGACAGAGACACAGG 1672
Query 1673 AGGAGAGTGTTATGGCTGAGATGGGTGATGAAGAGACTGATGAAGTTGAGGAAGAAAATA 1732
|||| |||||||||||||| || | | ||| |||| |||||||||||||||||||
Sbjct 1673 AGGACAGTGTTATGGCTGA--TG----A--A-GAGCCTGAGGAAGTTGAGGAAGAAAATA 1723
Query 1733 AGAGTGCTGGAggaaagaggaaacgggggagaaattcaaagacagtgaaaggaacgggaa 1792
||||||||||||||||||||||||||||||||||| |||||||||| ||||| || ||||
Sbjct 1724 AGAGTGCTGGAGGAAAGAGGAAACGGGGGAGAAATACAAAGACAGTCAAAGGGACAGGAA 1783
Query 1793 agaagaaagaggaagaCGTTTGTTTCATGTGCTTTGATGGGGGTGATCTTGTCCTTTGTG 1852
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1784 AGAAGAAAGAGGAAGATGTTTGTTTTATGTGCTTTGATGGGGGTGATCTTGTCCTTTGTG 1843
Query 1853 ACCGCAGG 1860
||||||||
Sbjct 1844 ACCGCAGG 1851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92218401165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5