BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480851
Length=3848
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18790.1 | Symbols: PHYB, HY3, OOP1 | phytochrome B | chr2:8... 6078 0.0
AT4G16250.1 | Symbols: PHYD | phytochrome D | chr4:9195602-9199... 2569 0.0
> AT2G18790.1 | Symbols: PHYB, HY3, OOP1 | phytochrome B | chr2:8139881-8144430
FORWARD LENGTH=3996
Length=3996
Score = 6078 bits (3291), Expect = 0.0
Identities = 3598/3747 (96%), Gaps = 17/3747 (0%)
Strand=Plus/Plus
Query 114 CGGTGTCGGCGGTGGTGGCCGTGGCGGAGAAGCAGAACCGTCGTCAAGTCACACTACTAA 173
||||| | | || ||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 225 CGGTGGCCGTGGCGGTGGCCGTGGCGGAGAAGAAGAACCGTCGTCAAGTCACACTCCTAA 284
Query 174 TAACCGAAGAGGAGGAGAACAAGCTCAATCTTCAGGAACAAAATCTCTCAGACC----A- 228
|||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
Sbjct 285 TAACCGAAGAGGAGGAGAACAAGCTCAATCGTCGGGAACGAAATCTCTCAGACCAAGAAG 344
Query 229 C--GA--GAATCAATGAGCAAAGCAATTCAACAGTACACCGTCGACGCAAGACTCCACGC 284
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CAACACTGAATCAATGAGCAAAGCAATTCAACAGTACACCGTCGACGCAAGACTCCACGC 404
Query 285 CGTTTTCGAACAATCCGGCGAATCAGGGAAATCATTCGACTACTCACAATCACTCAAAAC 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 CGTTTTCGAACAATCCGGCGAATCAGGGAAATCATTCGACTACTCACAATCACTCAAAAC 464
Query 345 GACGACGTACGGTTCCTCTGTACCTGAGCAACAGATCACTGCTTATCTCTCTCGAATCCA 404
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 465 GACGACGTACGGTTCCTCTGTACCTGAGCAACAGATCACAGCTTATCTCTCTCGAATCCA 524
Query 405 GCGAGGTGGTTACATTCAGCCTTTCGGATGTATGATCGCCGTCGATGAATCAAGTTTTCG 464
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 525 GCGAGGTGGTTACATTCAGCCTTTCGGATGTATGATCGCCGTCGATGAATCCAGTTTCCG 584
Query 465 AATCATCGGTTACAGCGAAAACGCCAGAGAAATGTTAGGGCTTATGCCTCAATCTGTTCC 524
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 585 GATCATCGGTTACAGTGAAAACGCCAGAGAAATGTTAGGGATTATGCCTCAATCTGTTCC 644
Query 525 TACTCTTGAGAAACCTGAGATTCTAGCTATGGGAACTGATGTGAGATCTTTGTTCACTTC 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TACTCTTGAGAAACCTGAGATTCTAGCTATGGGAACTGATGTGAGATCTTTGTTCACTTC 704
Query 585 TTCGAGCTCGATTTTACTCGAGCGTGCTTTCGTTGCTCGAGAGATTACCTTGTTGAATCC 644
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 705 TTCGAGCTCGATTCTACTCGAGCGTGCTTTCGTTGCTCGAGAGATTACCTTGTTAAATCC 764
Query 645 TGTTTGGATCCATTCCAAGAATACTGGTAAACCGTTTTACGCCATTCTTCATAGGATTGA 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 GGTTTGGATCCATTCCAAGAATACTGGTAAACCGTTTTACGCCATTCTTCATAGGATTGA 824
Query 705 TGTTGGTGTTGTTATTGATTTAGAGCCAGCTAGAACTGAAGATCCTGCGCTTTCTATTGC 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TGTTGGTGTTGTTATTGATTTAGAGCCAGCTAGAACTGAAGATCCTGCGCTTTCTATTGC 884
Query 765 TGGTGCGGTTCAATCGCAGAAACTCGCGGTTCGTGCGATTTCGCAGTTACAGTCTCTTCC 824
|||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 885 TGGTGCTGTTCAATCGCAGAAACTCGCGGTTCGTGCGATTTCTCAGTTACAGGCTCTTCC 944
Query 825 CGGGGGTGATATTAAGCTTTTGTGTGATACTGTTGTGGAAAGTGTGAGGGACTTGACTGG 884
|| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 945 TGGTGGAGATATTAAGCTTTTGTGTGACACTGTCGTGGAAAGTGTGAGGGACTTGACTGG 1004
Query 885 GTATGATCGTGTTATGGTTTATAAGTTTCATGAAGATGAGCATGGAGAAGTTGTAGCTGA 944
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TTATGATCGTGTTATGGTTTATAAGTTTCATGAAGATGAGCATGGAGAAGTTGTAGCTGA 1064
Query 945 GAGTAAGCGAGATGATTTAGAGCCTTATATTGGACTGCATTATCCTGCTACTGATCTTCC 1004
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1065 GAGTAAACGAGATGATTTAGAGCCTTATATTGGACTGCATTATCCTGCTACTGATATTCC 1124
Query 1005 TCAAGCGTCACGGTTCTTGTTTAAGCAGAACCGTGTCCGAATGATAGTAGATTGCAATGC 1064
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TCAAGCGTCAAGGTTCTTGTTTAAGCAGAACCGTGTCCGAATGATAGTAGATTGCAATGC 1184
Query 1065 CACACCCGTTCTTGTGGTCCAGGACGATAGGCTAACTCAATCTATGTGCTTGGTTGGTTC 1124
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1185 CACACCTGTTCTTGTGGTCCAGGACGATAGGCTAACTCAGTCTATGTGCTTGGTTGGTTC 1244
Query 1125 TACTCTTAGGGCTCCTCATGGTTGTCACTCTCAGTATATGGCTAACATGGGATCTATTGC 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 TACTCTTAGGGCTCCTCATGGTTGTCACTCTCAGTATATGGCTAACATGGGATCTATTGC 1304
Query 1185 TTCTTTAGCTATGGCGGTTATAATAAATGGAAATGAAGAAGATGGGAGCAATGTAGCTAG 1244
|||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1305 GTCTTTAGCAATGGCGGTTATAATCAATGGAAATGAAGATGATGGGAGCAATGTAGCTAG 1364
Query 1245 TGGGAGAAGCTCGATGAGGCTTTGGGGTTTGGTCGTTTGCCATCACACTTCTTCTCGCTG 1304
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1365 TGGAAGAAGCTCGATGAGGCTTTGGGGTTTGGTTGTTTGCCATCACACTTCTTCTCGCTG 1424
Query 1305 TATACCGTTTCCGCTAAGGTATGCTTGTGAGTTTTTGATGCAGGCTTTCGGTTTACAGTT 1364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 CATACCGTTTCCGCTAAGGTATGCTTGTGAGTTTTTGATGCAGGCTTTCGGTTTACAGTT 1484
Query 1365 AAACATGGAATTGCAGTTAGCTTTGCAAATGTCAGAGAAACGCGTTTTGAGAACGCAGAC 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 AAACATGGAATTGCAGTTAGCTTTGCAAATGTCAGAGAAACGCGTTTTGAGAACGCAGAC 1544
Query 1425 GCTGTTATGCGATATGCTTCTGCGTGACTCGCCTGCTGGAATTGTTACACAGAGTCCTAG 1484
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1545 ACTGTTATGTGATATGCTTCTGCGTGACTCGCCTGCTGGAATTGTTACACAGAGTCCCAG 1604
Query 1485 TATCATGGACTTAGTTAAATGTGACGGTGCAGCATTTCTTTACCACGGGAAGTATTACCC 1544
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 TATCATGGACTTAGTGAAATGTGACGGTGCAGCATTTCTTTACCACGGGAAGTATTACCC 1664
Query 1545 GTTGGGTGTTGCTCCTAGTGAAGTTCAGATAAAAGATGTTGTGGAGTGGTTGCTTGCGAA 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 GTTGGGTGTTGCTCCTAGTGAAGTTCAGATAAAAGATGTTGTGGAGTGGTTGCTTGCGAA 1724
Query 1605 TCACGCGGATTCAACTGGATTAAGCACTGATAGCTTAGGCGATGCGGGGTATCCTGGTGC 1664
||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1725 TCATGCGGATTCAACCGGATTAAGCACTGATAGTTTAGGCGATGCGGGGTATCCCGGTGC 1784
Query 1665 AGCTGCGTTAGGGGATGCTGTGTGCGGTATGGCAGTTGCATATATCACAAAAAGAGACTT 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 AGCTGCGTTAGGGGATGCTGTGTGCGGTATGGCAGTTGCATATATCACAAAAAGAGACTT 1844
Query 1725 TCTTTTTTGGTTTCGATCTCACACTGCGAAAGAAATCAAATGGGGAGGCGCGAAGCATCA 1784
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1845 TCTTTTTTGGTTTCGATCTCACACTGCGAAAGAAATCAAATGGGGAGGCGCTAAGCATCA 1904
Query 1785 TCCCGAGGATAAAGATGATGGGCAACGAATGCATCCTCGTTTGTCCTTTCAGGCTTTTCT 1844
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1905 TCCGGAGGATAAAGATGATGGGCAACGAATGCATCCTCGTTCGTCCTTTCAGGCTTTTCT 1964
Query 1845 TGAAGTTGTTAAGAGCCGGAGTCAGCCATGGGAAACTGCGGAAATGGATGCGATACACTC 1904
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1965 TGAAGTTGTTAAGAGCCGGAGTCAGCCATGGGAAACTGCGGAAATGGATGCGATTCACTC 2024
Query 1905 GCTCCAGCTTATTCTGAGAGACTCTTTTAAAGAATCTGAGGCGGCTATGAACTCTAAAGC 1964
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 GCTCCAGCTTATTCTGAGAGACTCTTTTAAAGAATCTGAGGCGGCTATGAACTCTAAAGT 2084
Query 1965 TGTGGATGGTGCGGTTCAGCCATGTAGGGATATGGCGGGAGAGCAGGGGATTGATGAGTT 2024
||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2085 TGTGGATGGTGTGGTTCAGCCATGTAGGGATATGGCGGGGGAACAGGGGATTGATGAGTT 2144
Query 2025 AGGTGCAGTTGCAAGAGAGATGGTTAGGCTCATTGAGACCGCAACTGTTCCTATATTCGC 2084
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2145 AGGTGCAGTTGCAAGAGAGATGGTTAGGCTCATTGAGACTGCAACTGTTCCTATATTCGC 2204
Query 2085 TGTGGATGCCGGAGGCTGCATCAATGGATGGAACGCTAAGATTGCAGAGTTGACAGGTCT 2144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2205 TGTGGATGCCGGAGGCTGCATCAATGGATGGAACGCTAAGATTGCAGAGTTGACAGGTCT 2264
Query 2145 CTCAGTTGAAGAAGCTATGGGAAAGTCTCTGGTTTCTGATCTGATATACAAAGAGAATGA 2204
||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 2265 CTCAGTTGAAGAAGCTATGGGGAAGTCTCTGGTTTCTGATTTAATATACAAAGAGAATGA 2324
Query 2205 AGAAACTGTCAATAAGCTTCTTTCTCGTGCTTTGAGAGGGGACGAGGAAAAGAATGTGGA 2264
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2325 AGCAACTGTCAATAAGCTTCTTTCTCGTGCTTTGAGAGGGGACGAGGAAAAGAATGTGGA 2384
Query 2265 GGTTAAGCTGAAAACTTTCAGCCCCGAACTTCAAGGGAACGCGGTTTTTGTGGTTGTGAA 2324
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 2385 GGTTAAGCTGAAAACTTTCAGCCCCGAACTACAAGGGAAAGCAGTTTTTGTGGTTGTGAA 2444
Query 2325 TGCTTGTTCCAGCAAAGACTACTTGAACAACATTGTCGGCGTCTGCTTTGTTGGACAGGA 2384
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 2445 TGCTTGTTCCAGCAAGGACTACTTGAACAACATTGTCGGCGTTTGTTTTGTTGGACAAGA 2504
Query 2385 CGTTACTGGTCAGAAGATAGTAATGGATAAGTTCATCAACATACAAGGAGATTACAAGGC 2444
||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2505 CGTTACTAGTCAGAAAATCGTAATGGATAAGTTCATCAACATACAAGGAGATTACAAGGC 2564
Query 2445 TATTGTCCATAGCCCAAACCCGCTAATCCCGCCAATTTTTGCTGCTGATGAGAACACGTG 2504
|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 2565 TATTGTACATAGCCCAAACCCTCTAATCCCGCCAATTTTTGCTGCTGACGAGAACACGTG 2624
Query 2505 CTGCCTGGAATGGAACATGGCGATGGAAAAGCTTACGGGTTGGTCTCGTAGTGAAGTGAT 2564
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2625 CTGCCTGGAATGGAACATGGCGATGGAAAAGCTTACGGGTTGGTCTCGCAGTGAAGTGAT 2684
Query 2565 TGGGAAAATGCTTGTCGGGGAAGTGTTTGGTAGCTGTTGCATGCTAAAGGGTCCTGATGC 2624
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2685 TGGGAAAATGATTGTCGGGGAAGTGTTTGGGAGCTGTTGCATGCTAAAGGGTCCTGATGC 2744
Query 2625 TTTAACCAAGTTCATGATTGTATTGCATAATGCGATTGGTGGCCAAGAGACGGATAAGTT 2684
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2745 TTTAACCAAGTTCATGATTGTATTGCATAATGCGATTGGTGGCCAAGATACGGATAAGTT 2804
Query 2685 CCCTTTTCCGTTCTTTGACCGCAATGGGAAGTTTGTTCAGGCTCTATTGACTGCAAACAA 2744
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2805 CCCTTTCCCATTCTTTGACCGCAATGGGAAGTTTGTTCAGGCTCTATTGACTGCAAACAA 2864
Query 2745 GCGGGTCAGCCTCGACGGAAAGGTTATTGGGGCATTCTGTTTCTTGCAGATCCCGAGTCC 2804
|||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 2865 GCGGGTTAGCCTCGAGGGAAAGGTTATTGGGGCTTTCTGTTTCTTGCAAATCCCGAGCCC 2924
Query 2805 TGAGCTGCAGCAAGCTTTAGCAGTCCAACGGAGGCAGGACACAGAGTGTTTCACGAAGGC 2864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2925 TGAGCTGCAGCAAGCTTTAGCAGTCCAACGGAGGCAGGACACAGAGTGTTTCACGAAGGC 2984
Query 2865 AAAAGAGTTAGCTTATATTTGTCAGGTGATAAAGAATCCTTTGAGCGGTATGCGTTTCTC 2924
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2985 AAAAGAGTTGGCTTATATTTGTCAGGTGATAAAGAATCCTTTGAGCGGTATGCGTTTCGC 3044
Query 2925 AAACTCACTGTTGGAGGCCACAGACTTGAACGAGGACCAGAAGCAGTTACTTGAAACAAG 2984
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3045 AAACTCATTGTTGGAGGCCACAGACTTGAACGAGGACCAGAAGCAGTTACTTGAAACAAG 3104
Query 2985 TGTTTCTTGCGAGAAACAGATCTCAAGGATTGTCGGTGACATGGATCTTGAAAGCATTGA 3044
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 3105 TGTTTCTTGCGAGAAACAGATCTCAAGGATCGTCGGGGACATGGATCTTGAAAGCATTGA 3164
Query 3045 AGACGGTTCGTTTGAGCTAAAGAGGGCGGAGTTTTTCCTCGGAAGTGTCATAAACGCGAT 3104
||||||||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 3165 AGACGGTTCATTTGTGCTAAAGAGGGAAGAGTTTTTCCTTGGAAGTGTCATAAACGCGAT 3224
Query 3105 TGTAAGCCAAGCGATGTTCTTATTAAGGGACAGAGGTCTTCAGCTGATCCGTGACATTCC 3164
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3225 TGTAAGTCAAGCGATGTTCTTATTAAGGGACAGAGGTCTTCAGCTGATCCGTGACATTCC 3284
Query 3165 CGAAGAGATCAAATCAATAGTTGTTTTTGGAGACCAGATAAGGATTCAACAGCTCCTGGC 3224
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3285 CGAAGAGATCAAATCAATAGAGGTTTTTGGAGACCAGATAAGGATTCAACAGCTCCTGGC 3344
Query 3225 TGAGTTTCTGCTGACTATAATTCGGTATGCTCCATCTCAAGAGTGGGTGGAGATCCATTT 3284
|||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 3345 TGAGTTTCTGCTGAGTATAATCCGGTATGCACCATCTCAAGAGTGGGTGGAGATCCATTT 3404
Query 3285 AAGCCAAGTTTCAAAACAAGCGGCTGATGGATTCACCGCTATCCGCACAGAATTCAGAAT 3344
||||||| ||||||| ||| ||||||||||||| |||| ||||||||||||||||||||
Sbjct 3405 AAGCCAACTTTCAAAGCAAATGGCTGATGGATTCGCCGCCATCCGCACAGAATTCAGAAT 3464
Query 3345 GGCGTGTCCAGGTGAAGGTCTGCCTCCAGAGCTAGTCCGAGACATGTTCCATAGTAGCAG 3404
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3465 GGCGTGTCCAGGTGAAGGTCTGCCTCCAGAGCTAGTCCGAGACATGTTCCATAGCAGCAG 3524
Query 3405 GTGGACAAGCCCTGAAGGATTAGGTCTAAGCGTATGTCGAAAGATTCTAAAGCTCATGAA 3464
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||
Sbjct 3525 GTGGACAAGCCCTGAAGGTTTAGGTCTAAGCGTATGTCGAAAGATTTTAAAGCTAATGAA 3584
Query 3465 CGGTGAGGTTCAATACATCCGAGAATCAGAACGGTCTTATTTCCTCATCATTCTCGAACT 3524
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 3585 CGGTGAGGTTCAATACATCCGAGAATCAGAACGGTCCTATTTCCTCATCATTCTGGAACT 3644
Query 3525 ACCTGTACCTCGAAAACGCCCATTGTCAACCGCTAGTGGCAGCAGTGACATGATGTTGAT 3584
|||||||||||||| || ||||||||||| |||||||| || ||||||||||| ||||
Sbjct 3645 CCCTGTACCTCGAAAGCGACCATTGTCAACTGCTAGTGGAAGTGGTGACATGATGCTGAT 3704
Query 3585 GATGCCATATTAGTCAACATTTTCAGTTGGTATGAGAGTTTGTATCATTGTACGTGTGTT 3644
|||||||||||||||| || || ||||||||||||||||||||||||||||| | |||||
Sbjct 3705 GATGCCATATTAGTCA-CACTT-CAGTTGGTATGAGAGTTTGTATCATTGTATGAGTGTT 3762
Query 3645 TGTGTGTCTAACGACGTCTGAGGAGGATAGAAAGTTTTTTA---GTTTCCGGTGAGATTA 3701
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 3763 TGTGTGTCTAACGACGTCGGAGGAGGATAGAAAGTTTTTTTTTTGTTTCCGGTGAGATTA 3822
Query 3702 GTAGAGAAGAGGGAGATTGTTTGCGTTCAGCTCAGGTCGCCGGGaaaaaaaCGTAACAGT 3761
|||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||
Sbjct 3823 GTAGAGAAGAGGGAGATTATTTGCGTTCAGCTCAGCTCGCCGGAAAAAAAACGTAACAGT 3882
Query 3762 AGTTGTAGAGAATTTCAAGACTTCTTTTGTTTGTGCTGTGTAAATTGATAACTCCGAGAG 3821
||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 3883 AGTTGTAGAGAATTTCAAGACTT-TT--GTTTGTGCTGTGTAAATTGACAACTCCGAGAG 3939
Query 3822 AAACAAAAGAATGAGAAAAGAAGAGAG 3848
|||||||| ||||||| ||||||||||
Sbjct 3940 AAACAAAACAATGAGATAAGAAGAGAG 3966
Score = 108 bits (58), Expect = 5e-22
Identities = 93/109 (85%), Gaps = 6/109 (6%)
Strand=Plus/Plus
Query 1 TTATTGGTTTCTCCACTTATCTCCGATCCCAATTTTCTTC-TTC-CTAAA-CC-CAAATT 56
|||||||||||||||||||||||||||| ||||| || | || || || ||| ||
Sbjct 13 TTATTGGTTTCTCCACTTATCTCCGATCTCAATTCTCCCCATTTTCTTCTTCCTCAAGTT 72
Query 57 CAAA-TCTCTTGAGAATTTAGCTCTACCGGAATTCGTCTCCGATAACTA 104
|||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 73 CAAAAT-TCTTGAGAATTTAGCTCTACCAGAATTCGTCTCCGATAACTA 120
> AT4G16250.1 | Symbols: PHYD | phytochrome D | chr4:9195602-9199486
REVERSE LENGTH=3495
Length=3495
Score = 2569 bits (1391), Expect = 0.0
Identities = 2718/3353 (81%), Gaps = 114/3353 (3%)
Strand=Plus/Plus
Query 243 CAAAGCAATTCAACAGTACACCGTCGACGCAAGACTCCACGCCGTTTTCGAACAATCCGG 302
|||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 171 CAAAGCTATTCAACAGTACACTGTCGACGCGAGACTCCACGCCGTCTTCGAACAATCCGG 230
Query 303 CGAATCAGGGAAATCATTCGACTACTCACAATCACTCAAAACGACGACGTACGGTTCCTC 362
|| ||||| || || || || |||||||| || || |||||| || |||||| ||||||
Sbjct 231 AGAGTCAGGTAAGTCGTTTGATTACTCACAGTCTCTTAAAACGGCGCCGTACGATTCCTC 290
Query 363 TGTACCTGAGCAACAGATCACTGCTTATCTCTCTCGAATCCAGCGAGGTGGTTACATTCA 422
||||| ||||| |||||||| ||||||||||| || ||||| || ||||| || | ||
Sbjct 291 CGTACCAGAGCAGCAGATCACAGCTTATCTCTCCCGGATCCAACGCGGTGGCTATACCCA 350
Query 423 GCCTTTCGGATG-TATGATCGCCGTCGATGAATCAAGTTTTC-GAATCATCGGTTACAGC 480
|||||| || || | ||||||||||||| ||||| | |||| |||||||||||||||
Sbjct 351 GCCTTTTGGCTGCT-TGATCGCCGTCGAAGAATCCA-CTTTCACAATCATCGGTTACAGT 408
Query 481 GAAAACGC-CAGAGAAATGTTAGGGCTTATGCCTCAATCTGTTCCTA-C-TC-TTGAGAA 536
||||| || | | |||||| ||||||| ||| |||||||||| || | | || || ||
Sbjct 409 GAAAATGCGC-GGGAAATGCTAGGGCTCATGTCTCAATCTGTACCAAGCATCGAGGACAA 467
Query 537 ACCTGAGATTCTAGCTATGGGAACTGATGTGAGATCTTTGTTCACTTCTTCGAGCT-CGA 595
| | ||| || || | || || || ||| || ||||| | |||| || ||||||| |
Sbjct 468 ATCAGAGGTTTTAACGATTGGTACGGATTTGCGATCTCTCTTCAAGTCATCGAGCTAC-C 526
Query 596 TTTTACTCGAGCGTGCTTTCGTTGCTCGAGAGATTAC-CTTGTTGAATCCTGTTTGGATC 654
|| | |||||||| || ||||| ||||||||||| || ||| |||||||| |||||||
Sbjct 527 TTCTCCTCGAGCGCGCGTTCGTGGCTCGAGAGATCACGCTT-CTGAATCCTATTTGGATT 585
Query 655 CATTCCAAGAATACTGGTAAACCGTTT-TACGCCATTCTTCATAGGATTGATGTTGGTGT 713
|| || || || ||||||||||| ||| ||||| ||||| || ||| |||||||||| |
Sbjct 586 CACTCTAACAACACTGGTAAACC-TTTCTACGCGATTCTCCACAGGGTTGATGTTGGAAT 644
Query 714 TGTT-ATTGATTTAGAGCCAGCTAGAACTGAAGATCCTGCGCTTTCTATTGCTGGTGCGG 772
| || || ||||||||||| ||| |||| |||||||| || ||||| || || || || |
Sbjct 645 T-TTGATCGATTTAGAGCCGGCTCGAACCGAAGATCCGGCACTTTCAATCGCCGGAGCAG 703
Query 773 TTCAATCGCAGAAACTCGCGGTTCGTGCGATTTCGCAGTTACAGTCTCTT-CCCGGGGGT 831
| |||||||||||||| ||||| ||||||||||| || ||||| || || || | ||
Sbjct 704 TCCAATCGCAGAAACTTGCGGTACGTGCGATTTCTCATTTACAATC-GTTGCCTAGCGGC 762
Query 832 GATATTAAGCTTTTGTGTGATACTGTTGTGGAAAGTGTGAGGGA-CTTGACTGGGTATGA 890
|| ||||||||| | ||||| |||||||||||||| || || || ||| ||||| || ||
Sbjct 763 GACATTAAGCTTCTATGTGACACTGTTGTGGAAAGCGTTAGAGATCTT-ACTGGCTACGA 821
Query 891 TCGTGTTATGGTTTATAAGTTTCATGAAGATGAGCATGGAGAAGTTGTAGCTGAGAGTAA 950
|| |||||||| || ||||||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 822 CCGCGTTATGGTGTACAAGTTTCATGAAGATGAACATGGTGAAGTCGTAGCCGAGAGTAA 881
Query 951 GC-GAGATGATTTAGAGCCTTATATTGGACTGCATTATCCTGCTACTGATCTTCCTCAAG 1009
| || | |||||||||||||| ||||| ||||||||||| ||||||||| ||||||| |
Sbjct 882 ACGGA-ACGATTTAGAGCCTTACATTGGTCTGCATTATCCCGCTACTGATATTCCTCAGG 940
Query 1010 CGTCACGGTTCTTGTTTAAGCAGAACCGTGTCCGAATGATAGTAGATTGCAATGCCACAC 1069
| || ||||||||||| ||||| |||||||| | ||||||||||||||| |||| |||
Sbjct 941 CATCTCGGTTCTTGTTCAAGCAAAACCGTGTTAGGATGATAGTAGATTGCTATGCGTCAC 1000
Query 1070 CCGTTCTTGTGGTCCAGGACGATAGGCTAACTCAATCTATGTGCTTGGTTGGTTCTACTC 1129
| |||| |||||| || ||||||||||| || || | ||| |||||||| ||||| |||
Sbjct 1001 CGGTTCGTGTGGTTCAAGACGATAGGCTCACGCAGTTTATATGCTTGGTGGGTTCGACT- 1059
Query 1130 TTAG-G-GCTCCTCATGGTTGTCACT-CTCAGTATATGGCTAACATGGGATCTATTGCTT 1186
|| | | ||||||||||| ||||| | |||| || ||| |||||||||| |||||||| |
Sbjct 1060 TT-GCGAGCTCCTCATGGCTGTCA-TGCTCAATACATGACTAACATGGGCTCTATTGCGT 1117
Query 1187 CTTTAGCTATGGCGGTTATAATAAATGGAAATGAAGAAGATGG-GA--GCAAT-GTAGCT 1242
| ||||||||||| ||||||||||||||||| ||||||||||| | | | || ||
Sbjct 1118 CGTTAGCTATGGCAGTTATAATAAATGGAAACGAAGAAGATGGTAATGGGGTTAATA-CT 1176
Query 1243 AGTGGGAGAAGCTCGATGAGGCTTTGGGGTTTGGTCGTTTGCCATCACACTTCTTCTCGC 1302
| || |||| ||||||||||||||||||||| || |||||||||||||| || ||||
Sbjct 1177 GGAGGAAGAAACTCGATGAGGCTTTGGGGTTTAGTTGTTTGCCATCACACATCAGCTCGT 1236
Query 1303 TGTATACCGTTTCCGCTAAGGTATGCTTGTGAGTTT-TTGATGCAGG-CTTTCGGTTTAC 1360
|| ||||| ||||| | ||||| |||||||||||| || ||||||| |||| || ||||
Sbjct 1237 TGCATACCTTTTCCTTTGAGGTACGCTTGTGAGTTTCTT-ATGCAGGCCTTT-GGCTTAC 1294
Query 1361 AGTTAAACATGGAATTGCAGTTAGCTTTGCAAATGTCAGAGAAACGCGTTTTGAGAACGC 1420
|| |||||||||| ||||||||||| ||||| |||| || ||||||||| |||||| ||
Sbjct 1295 AGCTAAACATGGAGTTGCAGTTAGCCTTGCAGGTGTCTGAAAAACGCGTTCTGAGAATGC 1354
Query 1421 AGACGCTGTTATGCGATATGCTTCTGCGTGACTCGCCTGCTGGAATTGTTACACAGAGTC 1480
|||| || ||||| ||||||||||| |||||||| || || || ||||| || ||||| |
Sbjct 1355 AGACACTATTATGTGATATGCTTCTACGTGACTCACCAGCGGGGATTGTCACGCAGAGGC 1414
Query 1481 CTAGTATCATGGACTTAGTTAAATGTGACGGTGCAGCATTTCTTTACCACGGGAAGTATT 1540
||||||||||||| ||||| |||||| | ||||| |||||||||||||| ||||||||||
Sbjct 1415 CTAGTATCATGGATTTAGTAAAATGTAATGGTGCGGCATTTCTTTACCAAGGGAAGTATT 1474
Query 1541 ACCCGTTGGGTGTTG-CTCCTAGTGAAGT-TCAGATAAAAGATGTTGTGGAGTGGTTGCT 1598
| |||||||||| || |||| | || | | |||||| || || |||||||||||||| |
Sbjct 1475 ATCCGTTGGGTG-TGACTCCAACTG-ATTCTCAGATTAATGACATTGTGGAGTGGTTGGT 1532
Query 1599 TGCGAATCACGCGGATTCAACTGGATTAAGCACTGATAGCTTAGGCGATGCGGGGTATCC 1658
||| || || | ||||| || || |||||||| ||||| |||||||||||||| |||||
Sbjct 1533 TGCTAACCATTCTGATTCTACCGGGTTAAGCACAGATAGTTTAGGCGATGCGGGTTATCC 1592
Query 1659 T-GGTGCAGCTGCGTTAGGG-GATGCTGTGTGCGGTATGGCAGTTGCATATATCACAAAA 1716
| || |||||||| || ||| ||||||||||||||||||||||| || | ||||||||||
Sbjct 1593 TCGG-GCAGCTGC-TTTGGGAGATGCTGTGTGCGGTATGGCAGTCGCGTGTATCACAAAA 1650
Query 1717 AGAGACTTTCTTTTTTGGTTTCGATCTCACACTGCGAAAGAAATCAAATGGGGAGGCGCG 1776
|| ||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct 1651 AGGGACTTCCTTTTCTGGTTTCGGTCTCATACTGAGAAAGAAATCAAATGGGGAGGGGCT 1710
Query 1777 AAGCATCATCCCGAGGATAAAGATGATGGGCAACGAATGCATCCTCGTT-TGTCCTTTCA 1835
||||| ||||| ||||| ||||||||||| || || ||| |||| |||| | || || ||
Sbjct 1711 AAGCACCATCCTGAGGACAAAGATGATGGTCAGCGGATGAATCCGCGTTCT-TCGTTCCA 1769
Query 1836 GGCTTTTCTTGAAGTTGTTAAGAGCCGGA-GTCAGCCATGGGAAACTGCGGAAATGGATG 1894
| ||||||| |||||||||||||||| || ||||||||||||||||||| |||||||| |
Sbjct 1770 GACTTTTCTCGAAGTTGTTAAGAGCC-GATGTCAGCCATGGGAAACTGCTGAAATGGACG 1828
Query 1895 CGATACACTCGCTCCAGCTTATTCTGAGAGACTCTTTTAAAGAATCTGAGGCGGCTATGA 1954
| || |||||||||||||||||||| ||||||||||| ||||| ||||| || | |||
Sbjct 1829 CCATTCACTCGCTCCAGCTTATTCTAAGAGACTCTTTCAAAGAGTCTGAAGC-G--ATGG 1885
Query 1955 ACTCTAAAGCTG-TG--GATGGTGCGGTTCAG-C-CATGTAG-GGATATGGCGGGAGAGC 2008
|||||||||||| || | ||| ||||||||| | |||| || ||||| || | |||
Sbjct 1886 ACTCTAAAGCTGCTGCAGCTGGGGCGGTTCAGCCACATGGAGATGATAT---GGTACAGC 1942
Query 2009 AGGGGATTG-ATGAGTTAGGTGCAGTTGCAAGAGAGATGGTTAGGCTCATTGAGACCGCA 2067
| |||| || | ||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1943 AAGGGA-TGCAGGAGATAGGTGCAGTTGCAAGAGAGATGGTTAGGCTCATTGAGACTGCG 2001
Query 2068 ACTGTTCCTATATTCGCTGTGGATGCCGGA-GGCTGCATCAATGGATGGAACGCTAAGAT 2126
|| ||||||||||| |||||||| | | || ||||||||||| |||||||| |||||
Sbjct 2002 ACGGTTCCTATATTTGCTGTGGACATAG-ACGGTTGCATCAATGGGTGGAACGCCAAGAT 2060
Query 2127 TGCAGAGTTGACAGGTCTCTCAGTTGAAGAAGCTATGGGAAAGTCTCTGGTTT-CTGA-T 2184
|||||| |||| ||||| || |||||||| |||||||||||||| |||||| | || |
Sbjct 2061 CGCAGAGCTGACCGGTCTTTCTGTTGAAGACGCTATGGGAAAGTCGCTGGTTCGC-GAAT 2119
Query 2185 CTGATATACAAAGAGAATGAAGAAACTGTCAATAAGCTTCTTTCTCGTGCTTTGAGAGGG 2244
|||||||||||||| | ||||||| || ||| |||||||||| ||||| | | ||||
Sbjct 2120 -TGATATACAAAGAGTACAAAGAAACAGTTGATAGGCTTCTTTCTTGTGCTCTCAAAGGG 2178
Query 2245 GACGA-GGAAAAGAATGTGGAGGTTAAGCTGAAAACTTTCAGCCCCGAACTTCAAGGGAA 2303
|| || || || |||||||||||| |||||||||||||| | |||| || ||||| ||
Sbjct 2179 GATGAAGGCAA-GAATGTGGAGGTCAAGCTGAAAACTTTTGGTTCCGAGCTACAAGGAAA 2237
Query 2304 CGCGGTTTTTGTGGTTGTGAATGCTTGTTCCAGCAAAGACTACTTGAACAACATTGTCGG 2363
|| | ||||||||||| || || ||||| ||||| |||||||| |||||||| || ||
Sbjct 2238 AGCAATGTTTGTGGTTGTCAACGCATGTTCAAGCAAGGACTACTTAAACAACATCGTTGG 2297
Query 2364 CGTCTGCTTTGTTGGACAGGACGTTACTGGTCAGAAGATAGTAATGGATAAGTTCATCAA 2423
||||||||||||||||| || || |||||||| || || || ||||| |||||||||||
Sbjct 2298 AGTCTGCTTTGTTGGACAAGATGTAACTGGTCATAAAATTGTTATGGACAAGTTCATCAA 2357
Query 2424 CATACAAGGAGATTACAAGGCTATTGTCCATAGCCCAAACCCGCTAATCCCGCCAATTTT 2483
||||||||| ||||||||||| || |||||||||| ||||| || ||||| ||||| ||
Sbjct 2358 CATACAAGGTGATTACAAGGCCATCATCCATAGCCCGAACCCTCTGATCCCTCCAATCTT 2417
Query 2484 TGCTGCTGATGAGAACACGTGCTGCCTGGAATGGAACA-TGGCGATGGAAAAGCTTACGG 2542
||| || |||||||| ||||||||||| || ||||||| || | ||||||||||| || |
Sbjct 2418 TGCAGCGGATGAGAATACGTGCTGCCTTGAGTGGAACACTG-CAATGGAAAAGCTCACAG 2476
Query 2543 GTTGGTCTCGTAGTGAAGTGATTGGGAAAATG-CTTGTCGGGGAAGTGTTTGGTAGCTGT 2601
| ||| |||| || ||||||||||| ||||| ||||| ||||||| ||||| |||| |
Sbjct 2477 GCTGGCCTCGCAGCGAAGTGATTGG-AAAATTACTTGTTAGGGAAGTATTTGGGAGCTAT 2535
Query 2602 TGCATG-CTAAAGGGTCCTGATGCTTTAACCAAGTTCATGATTGTATTGCATAATGCGAT 2660
|||| | ||||||||||||||||| ||||| ||||||||||| || |||||||| |||||
Sbjct 2536 TGCA-GACTAAAGGGTCCTGATGCGTTAACTAAGTTCATGATCGTCTTGCATAACGCGAT 2594
Query 2661 TGGTGGCCAAGAGACGGATAAGTTCCCTTTTCCGTTCTTTGACCGCAATGGG-AAGTTTG 2719
||||||||||| || ||||| ||||| || ||||||||||| ||||| ||| || ||
Sbjct 2595 CGGTGGCCAAGATACTGATAAATTCCCATTCCCGTTCTTTGATCGCAAAGGGGAA-TTCA 2653
Query 2720 TTCAGGCTCTATTGACTGCAAACAAGCGGGTCAGCCTCGACGG-AAAGGTTATTGGGGCA 2778
|||||||||| ||||| ||||| ||||||||| |||| || ||| | ||||||||
Sbjct 2654 TTCAGGCTCTCCTGACTTTGAACAAACGGGTCAGCATCGATGGCAAAA-TCATTGGGGCT 2712
Query 2779 TTCTGTTTCTTGCAGATCCCGAGTCCTGAGCTGCAGCAAGCTTTAGCAGTCCA-ACGGAG 2837
|||||||| |||||||| |||||||| ||||||||||||||| ||| ||| || | ||||
Sbjct 2713 TTCTGTTTTTTGCAGATACCGAGTCCCGAGCTGCAGCAAGCTCTAGAAGTTCAGA-GGAG 2771
Query 2838 GCAGGACACAGAGTGTTTCACGAAGGCA--AAAGAGTTAGCTTATATTTGTC-AGGTGAT 2894
|||||| | || | |||| | |||| | |||||||| ||||| |||| || | || ||
Sbjct 2772 GCAGGAGAGTGAATATTTCTC-AAGG-AGGAAAGAGTTGGCTTACATTT-TCCAAGTTAT 2828
Query 2895 AAAGAATCCTTTGAGCGGTAT-GCGTTTCTCAAACTCACTGTTGGAGGCCACAGACTTGA 2953
||||||||| ||||| || || ||||||| |||| ||| || |||| | || || || |
Sbjct 2829 AAAGAATCCATTGAGTGG-ATTGCGTTTCACAAATTCATTGCTGGAAGACATGGATTTAA 2887
Query 2954 ACGAGGACCAGAAGCAG-TTACTTGAAACAAGTGTTTCTTGCGAGAAACAGATCTCAAGG 3012
||||||| ||||||||| || |||||||| |||||||| || ||||| |||||||||| |
Sbjct 2888 ACGAGGATCAGAAGCAGCTT-CTTGAAACGAGTGTTTCATGTGAGAAGCAGATCTCAAAG 2946
Query 3013 ATTGTCGGTGACATGGATCTTGAAA-GCATTGAAGACGGTTCGTTTGAGCTAAAGAGGGC 3071
||||| || |||||||| | | ||| |||| || |||||||| ||| |||| |||| |
Sbjct 2947 ATTGTAGGAGACATGGA-CGTCAAAAGCATAGATGACGGTTCATTTCTGCTAGAGAGAAC 3005
Query 3072 GGAGTTTTTCCTCGG-AAGTGTCATAAACGCGATTG-TAAGCCAAG-CGATGTTCTTATT 3128
||||| ||| | || || ||||| ||| || | || ||||||||| | ||||| | |
Sbjct 3006 AGAGTTCTTCATTGGCAA-TGTCACAAATGC-AGTGGTAAGCCAAGTC-ATGTTGGTGGT 3062
Query 3129 AAGGGACAGAGGTCTTCAGCTGATCCGTGACATTCCCGAAG-AGATCAAATCAATAGTTG 3187
|| || ||| ||| |||||||||||| |||||||| | | || ||||||| || | ||
Sbjct 3063 GAGAGAGAGAAATCTCCAGCTGATCCGTAACATTCCC-ACGGAGGTCAAATCCATGGCTG 3121
Query 3188 TTTTTGGAGACCAGATAAGGATTCAACAGCTCCTGGCTGAGTTTCTGCTGACTATAATTC 3247
| | || |||||||||||| | |||||| | || || || |||||||| | ||| | |
Sbjct 3122 TCTACGGTGACCAGATAAGGCTCCAACAGGTTCTCGCAGAATTTCTGCTAAGTATTGTCC 3181
Query 3248 GGTATGCTCC-ATCTCAAGAG-TGGGTGGAGATCCATTTAAGCCAAGTTTCAAAAC-AAG 3304
| ||||| || || ||| | | ||| ||| ||||| || ||| | || ||| ||
Sbjct 3182 GTTATGCACCCATGG-AAG-GCTCGGTAGAGCTCCATCTATGCCC-GACTCTGAACCAAA 3238
Query 3305 CGGCTGATGGATTCACCGCTATCCGCACAGAATTCAGAATGGCGTGTCCAGGTGAAGGTC 3364
|||||| |||||| ||||| | || || ||||||||||||||| |||| ||||||
Sbjct 3239 TGGCTGACGGATTCTCCGCTGTACGTTTGGAGTTCAGAATGGCGTGTGCAGGGGAAGGTG 3298
Query 3365 TGCCTCCAGAGCTAGTCCGAGACATGTTCCATAGTAGCAGGTGGACAAGCCCTGAAGGAT 3424
|||| |||||| ||| | ||||||||||||||||||| | |||||||| || |||||||
Sbjct 3299 TGCCGCCAGAGAAAGTGCAAGACATGTTCCATAGTAGCCGATGGACAAGTCCAGAAGGAT 3358
Query 3425 TAGGTCTAAGCGTATGTC-GAAAGATTCTAAAGCTCATGAACGGTGAGGTTCAATACATC 3483
|||| |||||||| || | |||||||| | ||||| |||||||| | |||||| |||||
Sbjct 3359 TAGGACTAAGCGTTTG-CAGAAAGATTTTGAAGCTGATGAACGGAGGGGTTCAGTACATA 3417
Query 3484 CGAGAAT-CAGAACGGTCTTATTTCCTCATCATTCTCGAACTACCTGTACCTC 3535
|||||| | ||||| ||||||||||| ||| || ||||||| || || ||||
Sbjct 3418 AGAGAATTC-GAACGCTCTTATTTCCTAATCGTTATCGAACTCCCGGTTCCTC 3469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 191687889203
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5