BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480885
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20550.1 | Symbols: | HSP40/DnaJ peptide-binding protein | ... 1260 0.0
AT2G20560.1 | Symbols: | DNAJ heat shock family protein | chr2... 774 0.0
AT4G28480.1 | Symbols: | DNAJ heat shock family protein | chr4... 375 4e-103
> AT2G20550.1 | Symbols: | HSP40/DnaJ peptide-binding protein
| chr2:8845802-8847309 REVERSE LENGTH=1203
Length=1203
Score = 1260 bits (682), Expect = 0.0
Identities = 931/1044 (89%), Gaps = 45/1044 (4%)
Strand=Plus/Plus
Query 219 CCCGAGAAAGGCGGATGATATATTTTCTGAGTTCTTT--GG----TAGCCCTTCAGGTCC 272
||| ||||| ||||||||||||| ||||||||||||| || ||||||||| |||||
Sbjct 175 CCC-AGAAATGCGGATGATATATATTCTGAGTTCTTTGGGGTCTCTAGCCCTTCTGGTCC 233
Query 273 GAGAACTGCGGATGATATATCAGCAGAGTTCTTTGGGGTCTCTAGCCCTTCAGGTCCGAG 332
|||| | ||||||||||| | |||||||||| |||||||| |||||| ||||||||
Sbjct 234 AAGAAATAAGGATGATATATTTTCTGAGTTCTTTGAGGTCTCTAACCCTTCTGGTCCGAG 293
Query 333 A-ACTGCGGATGATATATTTTCTGAATTCTTTGAATTCCCTAGACCTTCTGCTGCTGCTG 391
| | | ||||||||||| | |||| | ||||| ||||||| || || | ||| |
Sbjct 294 AGA-TAAGGATGATATATCTGCTGAGTACTTTGGGGTCCCTAG-CC--CT--T-CTG--G 344
Query 392 CTGGTGGTAATGGTGGCGGCGGCA-AAGGAGGTGGTGGTGGTGGCGGCTC-ATCGCATCA 449
| |||| | |||| ||| | | ||||||| ||||||||||| ||| | || ||||||
Sbjct 345 C-AGTGGCAGCAGTGGAGGCAG-AGAAGGAGGAGGTGGTGGTGGTGGCACAAT-GCATCA 401
Query 450 CGGTGGAGCTAGAAAGGCAGCTCCTGTTGAAAAAGAGTTGCCTTGTAGCCTTGAAGATCT 509
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 402 CGGTGGAGCTAGGAAGGCAGCTCCTGTTGAAAAAAAGTTGCCTTGTAGCCTTGAAGATCT 461
Query 510 TTACAAAGGAACCACCAAGAAGATGAAGATCTCTAGGGAGATTGCTGGTGTCTTTGGCCA 569
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 462 TTACAAAGGAACCACCAAGAAGATGAAGATCTCTAGAGAGATTGCTGGTGTCTTTGGCAA 521
Query 570 GACGATGCAGGTACAAGAGATTTTGACTGTTGATGTGAAACCAGGGTGGAAGA-AGGGCA 628
||||| |||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 522 GACGACGCAGGTACAAGAGATTTTGACTGTTGATGTGAAACCGGGGTGGAAGACA-GGCA 580
Query 629 CAAAGATCACATTCACGGCGAAAGGAAATGAGCAACCCGGTGTGATTTCAGCGGATTTAG 688
|||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 581 CAAAGATCACATTCTCGGAGAAAGGAAATGAGCAACCCGGTGTGATACCAGCGGATTTAG 640
Query 689 TCTTCATCATCGATGAGAAGCCTCATCCGATTTTCACTCGAGATGGTAACGACCTCGTAG 748
|||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 641 TCTTCATCATAGATGAGAAGCCTCATCCGGTTTTCACTCGAGAGGGTAATGACCTCGTAG 700
Query 749 TCACACAGAATATCTCAGTTCTCGAGGCCTTTACCGGCTACACCGTCAACCTGACTACAC 808
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TCACACAGAAGATCTCAGTTCTCGAGGCCTTTACCGGCTACACCGTCAACCTGACTACAC 760
Query 809 TTGATGGTCGGAGACTGACCATCCCAGTCAACACTGTGATCCATCCAGAGTACGTGAAAG 868
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 761 TTGATGGTCGGAGACTGACCATCCCAGTCAACACTGTGATCCATCCCGAGTATGTGGAAG 820
Query 869 TGGTTCCAAATGAAGGAATGCCATTGCAGAAAGACCAGACTAAGAAAGGCAACTTGACGA 928
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||
Sbjct 821 TGGTTCCAAATGAAGGAATGCCGTTGCAGAAAGACCAGGCTAAGAAAGGCAACTTGAGGA 880
Query 929 TCAAATTTAACATCAAGTTCCCTACAAGGTTAACCTCAGAGCAGAAGACAGGATTGAAGA 988
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 881 TCAAATTTAACATCAAGTTCCCTACAACGTTAACCTCAGAGCAGAAGACAGGATTGAAGA 940
Query 989 AAATTCTCGGATGAATTGAGTTAAAATCAGCCCATTCCAG--ACAA-CA-C--A-T---- 1037
|| ||||||||||||| ||||||||||||||||| ||||| | || || | | |
Sbjct 941 AACTTCTCGGATGAATGGAGTTAAAATCAGCCCAGTCCAGTTAAAATCAGCCCAGTCCAG 1000
Query 1038 ---------TGTAGAATACGACAGGAAGCATCAAAGCTTCTATATATTGTGATTAAATAA 1088
|||||||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 1001 ACAAAACAATGTAGAATACGAGAGGAAGTATCAAAGCTCCTATATATTGTGATTAAATAC 1060
Query 1089 TGTTGTGCCCTTTCTGATCGATTTGTAGCATATGTATGAATGAGTACTGTTGTGACCTTT 1148
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TGTTGTGGCCTTTCTGATCGATTTGTAGCATATGTATGAATGAGTACTGTTGTGACCTTT 1120
Query 1149 CTGATCGATTTGTAACATATGTATAATTAAATACTGTTGTGATCTTTCTGATCGATTTGT 1208
||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1121 ATGATCGATTTGTAACGTATGTATAATTAAATACTGTTGT-ATATTTCTGATCGATTTGT 1179
Query 1209 AACATATGTATGATTGAATACGCC 1232
|||||||||||||||||| |||||
Sbjct 1180 AACATATGTATGATTGAAGACGCC 1203
Score = 204 bits (110), Expect = 2e-51
Identities = 194/231 (84%), Gaps = 20/231 (9%)
Strand=Plus/Plus
Query 170 GAACGATTTCTGGAACA-TCAGTCCACACTCTGAGAAGAAACATGAGTCACCCGAGAAAG 228
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 58 GAACGATTTCTGGAACATTCATTCCACACTCTGAGAAGAAACATGAGTCACCCGAGAAAT 117
Query 229 GCGGATGATATATTTTCTGAGTTCTTTGG--T----AGCCCTTCAGGTCC----G----- 273
|| |||||||||||||||||||||||||| | || ||||| ||||| |
Sbjct 118 GCAGATGATATATTTTCTGAGTTCTTTGGGGTCTCTAGACCTTCTGGTCCTTCTGGTCCC 177
Query 274 AGAACTGCGGATGATATATCAG-CAGAGTTCTTTGGGGTCTCTAGCCCTTCAGGTCCGAG 332
|||| |||||||||||||| | | |||||||||||||||||||||||||| ||||| ||
Sbjct 178 AGAAATGCGGATGATATAT-ATTCTGAGTTCTTTGGGGTCTCTAGCCCTTCTGGTCCAAG 236
Query 333 AACTGCGGATGATATATTTTCTGAATTCTTTGAATTCCCTAGACC-TTCTG 382
|| | |||||||||||||||||| |||||||| || ||| ||| |||||
Sbjct 237 AAATAAGGATGATATATTTTCTGAGTTCTTTGAGGTCTCTA-ACCCTTCTG 286
> AT2G20560.1 | Symbols: | DNAJ heat shock family protein | chr2:8848130-8850010
REVERSE LENGTH=1432
Length=1432
Score = 774 bits (419), Expect = 0.0
Identities = 629/729 (86%), Gaps = 20/729 (3%)
Strand=Plus/Plus
Query 411 CGGCAAAGGAGGTGGTGGTGGTGGCGGCTC-ATCGCATCACGGTGGAGCTAGAAAGGCAG 469
|||| ||||||| || |||||||| ||||| || |||||||||||||||||| ||||| |
Sbjct 618 CGGCGAAGGAGGAGGCGGTGGTGGTGGCTCGAT-GCATCACGGTGGAGCTAGGAAGGCTG 676
Query 470 CTCCTGTTGAAAA-AGAGTTGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAG 528
||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 CTCCTATCGAAAACA-AGTTGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAA 735
Query 529 AAGATGAAGATCTCTAGGGAGATTGCTGGTGTCTTTGGCCAGACGATGCAGGTACAAGAG 588
||||||| ||| |||||||||||||||| |||| |||| ||||||||||||| |||||
Sbjct 736 AAGATGAGGATTTCTAGGGAGATTGCTGATGTCAGTGGCAAGACGATGCAGGTGGAAGAG 795
Query 589 ATTTTGACTGTTGATGTGAAACCAGGGTGGAAGAAGGGCACAAAGATCACATTCACGGCG 648
|||||||| |||||||||||||||| |||||||| |||||||||||||| ||| | | |
Sbjct 796 ATTTTGACCATTGATGTGAAACCAGGATGGAAGAAAGGCACAAAGATCACGTTCCCAGAG 855
Query 649 AAAGGAAATGAGCAACCCGGTGTGATTTCAGCGGATTTAGTCTTCATCATCGATGAGAAG 708
||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct 856 AAAGGCAATGAGCAACCCGGTGTGATTCCAGCGGATTTAGTCTTCATAATCGACGAGAAG 915
Query 709 CCTCATCCGATTTTCACTCGAGATGGTAACGACCTCGTAGTCACACAGAATATCTCAGTT 768
||||| ||| ||||||||||||| |||||||||||| ||||||||||||| |||||| ||
Sbjct 916 CCTCACCCGGTTTTCACTCGAGAGGGTAACGACCTCATAGTCACACAGAAGATCTCACTT 975
Query 769 CTCGAGGCCTTTACCGGCTACACCGTCAACCTGACTACACTTGATGGTCGGAGACTGACC 828
| |||||||| || || ||||| || ||||||||||| ||||||||||||||||||||
Sbjct 976 GTTGAGGCCTTGACTGGTTACACAGTGAACCTGACTACTCTTGATGGTCGGAGACTGACA 1035
Query 829 ATCCCAGTCAAC-ACTGTGATCCATCCAGAGTACGTGAAAGTGGTTCCAAATGAAGGAAT 887
|| ||||||| | || ||| ||||||| ||||||| | ||||||| || || ||||| ||
Sbjct 1036 ATTCCAGTCACCAAC-GTGGTCCATCCCGAGTACGAGGAAGTGGTACCGAAGGAAGGGAT 1094
Query 888 GCCATTGCAGAAAGACCAGACTAAGAAAGGCAACTTGACGATCAAATTTAACATCAAGTT 947
||||||||| |||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 1095 GCCATTGCAAAAAGACCAGACTAAGAGAGGTAACTTGAGGATCAAATTTAACATCAAGTT 1154
Query 948 CCCTACAAGGTTAACCTCAGAGCAGAAGACAGGATTGAAGAAAATTCTCGGATGAATTGA 1007
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||
Sbjct 1155 CCCTACAAGGTTAACCTCAGAGCAGAAGACAGGAGTGAAGAAACTTCTCGGATGAAATGA 1214
Query 1008 GTTAAAATCAGCCCATTCCAGACAACACATTGTAGAATACGAC-AGGAAGCATCAAAG-C 1065
|||| | ||||| |||| ||||||| ||| ||| ||| | || ||||| || ||| |
Sbjct 1215 GTTATAGTCAGCACATTTCAGACAAAACAATGTTGAACA-GAAGAGGAA-CAAGAAAATC 1272
Query 1066 -T-T--CT-AT-ATA----TTGTGATTAAATAATGTTGTGCCCTTTCTGATCGATTTGTA 1115
| | | | | | ||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 1273 ATGTTGCAGACCACAGGGATTGTGATTAAATACTGTTGTGACCTTTTTGATCGATTTGTA 1332
Query 1116 GCATATGTA 1124
||||||||
Sbjct 1333 ACATATGTA 1341
> AT4G28480.1 | Symbols: | DNAJ heat shock family protein | chr4:14073042-14075271
FORWARD LENGTH=1495
Length=1495
Score = 375 bits (203), Expect = 4e-103
Identities = 425/527 (81%), Gaps = 35/527 (7%)
Strand=Plus/Plus
Query 439 TCATC-GCATCACGGTGGAGCTA-GAAAGGCAGCTCCTGTTGA-AAAAGAGTTGCCTTGT 495
||||| ||||||| || ||||| |||| | |||||| | || || | |||||||||||
Sbjct 751 TCATCATCATCACGCTGCAGCTAGGAAA-GTGGCTCCTATCGAGAACA-AGTTGCCTTGT 808
Query 496 AGCCTTGAAGATCTTTACAAAGGAACCACCAAGAAGATGAAGATCTCTAGGGAGATTGCT 555
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 809 AGCCTTGAAGATCTCTACAAAGGAACCACCAAGAAGATGAAGATCTCCAGGGAGATTG-T 867
Query 556 GG-TGTCTTTGGCCAGACGATGCAGGTACAAGAGATTTTGACTG-TTG-ATGTGAAACCA 612
| |||| || || | ||||| || |||||||| | || | ||| | ||||||||
Sbjct 868 AGATGTCAGCGGTAAGGCAATGCAAGTGGAAGAGATTCTAAC-GATTGGA-GTGAAACCC 925
Query 613 GGGTGGAAGAAGGGCACAAAGATCACATTCACGGCGAAAGGAAATGAGCAACCCGGTGTG 672
||||||||||| |||||||||||||||||| | | |||||| |||||||| || ||||||
Sbjct 926 GGGTGGAAGAAAGGCACAAAGATCACATTCCCAGAGAAAGGCAATGAGCATCCAGGTGTG 985
Query 673 ATTTCAGCGGATTTAGTCTTCATCATCGATGAGAAGCCTCATCC-GAT-TTTCACTCGAG 730
||| |||||||| ||||||||||||| || ||||| || ||||| | | ||| || || |
Sbjct 986 ATTCCAGCGGATCTAGTCTTCATCATTGACGAGAAACCCCATCCAG-TGTTT-ACCCGTG 1043
Query 731 ATGGTAACGACCTCG-TAGTCACACAGAATA-TCTCAGTT-CTCGAGGCCTTTACCGGCT 787
| || |||||||| | | ||||||||||| | ||||| | || || ||||| || ||||
Sbjct 1044 AGGGCAACGACCT-GATTGTCACACAGAA-AGTCTCACTAGCT-GATGCCTTAACAGGCT 1100
Query 788 ACACCGTCAACC-T-GACTACACTTGATGGTCGGAGACTGACCATCCC-AGTCA-ACACT 843
|||||| ||| | | | | || |||||||| || | ||| || ||||| | ||| | | |
Sbjct 1101 ACACCG-CAAACATAG-CGACCCTTGATGGCCGTACACTTACAATCCCGA-TCACAAA-T 1156
Query 844 GTGATCCATCCAGAGTACGTGAA-AG-TGGTTCC-AAATGAAGGAATGCCATTGCAGAAA 900
||||||||||||||||| |||| || ||||||| ||| || ||||||||| | ||||||
Sbjct 1157 GTGATCCATCCAGAGTA--TGAAGAGGTGGTTCCTAAA-GAGGGAATGCCACTCCAGAAA 1213
Query 901 GACCAGACTAAGAAAGGCAACTTGACGATCAAATTTAACATCAAGTT 947
|| ||||| |||||||| ||||| | |||||| || || ||||||||
Sbjct 1214 GATCAGACAAAGAAAGGGAACTTAAGGATCAAGTTCAATATCAAGTT 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60541857270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5