BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480886
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20560.1 | Symbols: | DNAJ heat shock family protein | chr2... 1899 0.0
AT4G28480.1 | Symbols: | DNAJ heat shock family protein | chr4... 806 0.0
AT2G20550.1 | Symbols: | HSP40/DnaJ peptide-binding protein | ... 773 0.0
> AT2G20560.1 | Symbols: | DNAJ heat shock family protein | chr2:8848130-8850010
REVERSE LENGTH=1432
Length=1432
Score = 1899 bits (1028), Expect = 0.0
Identities = 1323/1460 (91%), Gaps = 42/1460 (3%)
Strand=Plus/Plus
Query 1 AACATTCCACAGAATTCTCCA-AACTCTGAGAAGAAACATCATGAATCCGCCGTTTTTAA 59
||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1 AACGTTCCACAGAATTCTCCACAACTCTGAGAAGAAACATCATGAATCCGTCGTTTTTAA 60
Query 60 GACC-AAACTCTTGTAATCTTCAACTAAGAACTATCATAAT-AAATCCAGAAGAAACAGA 117
|||| |||||| | ||||||||||| || || | | | || ||| ||||||||||||
Sbjct 61 GACCAAAACTCATCTAATCTTCAAC-AA-AA-GA-C-T-ATCAAA---AGAAGAAACAGA 111
Query 118 GCAAATTTCATTTTTTCTGAAC----A-AT--ATATTAATCAGAATCAGgaaaagtgaag 170
|||||||||||| | || |||| | || ||||||||||||||||||||||||||||
Sbjct 112 GCAAATTTCATTCTCTCAGAACAAATATATACATATTAATCAGAATCAGGAAAAGTGAAG 171
Query 171 aagcgaaagagagaagaagaagaagGTCGGATGGGAGTGGATTACTACAAAGTCCTCCAA 230
||||| || |||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 172 AAGCG-AA-AGAG-AGAAGAAG-A--TCGGATGGGAGTGGATTACTACAAAGTCCTCCAA 225
Query 231 GTTGATCGCAACGCCAGCGACGATGATCTTAAGAAAGCTTATCGTAAACTCGCCATGAAA 290
|| ||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 226 GTCGATCGCAGCGCAAGCGACGATGATCTCAAGAAAGCTTATCGTAAACTTGCCATGAAA 285
Query 291 TGGCATCCCGACAAAAACCCCAACAACAAAAAAGACGCCGAAGCTATGTTCAAACAAATC 350
||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 286 TGGCATCCCGACAAAAATCCCAACAACAAAAAGGATGCCGAAGCTATGTTCAAACAAATA 345
Query 351 TCCGAAGCTTACGAGGTACTAAGTGATCCTCAGAAGAAAGCTGTGTATGATCAATATGGT 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TCCGAAGCTTACGAGGTACTAAGTGATCCTCAGAAGAAAGCTGTGTATGATCAATATGGT 405
Query 411 GAAGAAGGTTTGAAAGGGAATGTGCCACCTCCAGATGCTGGTGGAGCTACTTATTTCTCT 470
|| ||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||
Sbjct 406 GAGGAAGGTTTGAAAGGGAACGTGCCACCTCCGGATGCAGGTGGAGCTACTTACTTCTCT 465
Query 471 ACCGGGGATGGTCCAACGTCCTTCCGGTTTAACCCGAGAAATGCGGATGATATATTTGCT 530
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 466 ACCGGGGATGGTCCAACGTCCTTCAGGTTCAACCCGAGAAATGCGGATGATATATTTGCT 525
Query 531 GAGTTTTTTGGGTTCTCTAGTCCATTTGGTGGTGCTGGCGGAAGAGGTGGTACAAGATTC 590
||||| ||||| |||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 526 GAGTTCTTTGGCTTCTCTAGCCCATTTGG-----C-GGCGGAAGAGGTGGTACAAGATTC 579
Query 591 TCTAGCAGCATGTTTGGTGATGATATATTTGCTTCTTTCGGCGAAGGAGGGGGCGGCGGT 650
||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||
Sbjct 580 TCTAGCAGCATGTTTGGTGATAATATGTTTGCTTCTTTCGGCGAAGGAGGAGGCGGTGGT 639
Query 651 GGTGGCTCAATGCATCACGGTGGAGCTAGGAAGGCGGCTCCTATCGAAAATAAGTTGCCT 710
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 640 GGTGGCTCGATGCATCACGGTGGAGCTAGGAAGGCTGCTCCTATCGAAAACAAGTTGCCT 699
Query 711 TGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAGAAGATGAGGATCTCTAGGGAGATT 770
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 700 TGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAAAAGATGAGGATTTCTAGGGAGATT 759
Query 771 GCTGATGTTAGTGGCAAGACAATGCAAGTGGAAGAGATTTTGACCATTGATGTGAAGCCA 830
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 760 GCTGATGTCAGTGGCAAGACGATGCAGGTGGAAGAGATTTTGACCATTGATGTGAAACCA 819
Query 831 GGGTGGAAGAAAGGCACAAAGATCACATTCCCAGAGAAAGGCAATGAGCAACCTGGTGTG 890
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 820 GGATGGAAGAAAGGCACAAAGATCACGTTCCCAGAGAAAGGCAATGAGCAACCCGGTGTG 879
Query 891 ATTCCAGCGGATTTAGTCTTCATCATTGACGAGAAGCCTCACCCGGTTTTCACTCGAGAG 950
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 880 ATTCCAGCGGATTTAGTCTTCATAATCGACGAGAAGCCTCACCCGGTTTTCACTCGAGAG 939
Query 951 GGTAACGACCTCGTAGTCACACAGAAGATCTCACTTGTTGAGGCCTTGACAGGCTACACA 1010
|||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 940 GGTAACGACCTCATAGTCACACAGAAGATCTCACTTGTTGAGGCCTTGACTGGTTACACA 999
Query 1011 GTGAACCTGACTACACTTGATGGTCGAAGACTGACAATCCCAGTCACCAAAGTGGTCCAT 1070
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 1000 GTGAACCTGACTACTCTTGATGGTCGGAGACTGACAATTCCAGTCACCAACGTGGTCCAT 1059
Query 1071 CCCGAGTACGAGGAAGTGGTTCCAAAGGAAGGAATGCCGTTGCAGAAAGACCAGACTAAG 1130
|||||||||||||||||||| || |||||||| ||||| ||||| |||||||||||||||
Sbjct 1060 CCCGAGTACGAGGAAGTGGTACCGAAGGAAGGGATGCCATTGCAAAAAGACCAGACTAAG 1119
Query 1131 AAAGGAAACTTGAGGATCAAATTCAACATCAAGTTCCCTACAAGATTAACCTCAGAGCAG 1190
| ||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1120 AGAGGTAACTTGAGGATCAAATTTAACATCAAGTTCCCTACAAGGTTAACCTCAGAGCAG 1179
Query 1191 AAGACAGGAGTGAAGAAGCTCCTCGGCTGAATTGGGTTATAATTAGAAGATTCCGGACAA 1250
||||||||||||||||| || ||||| |||| || |||||| | || | ||| | |||||
Sbjct 1180 AAGACAGGAGTGAAGAAACTTCTCGGATGAAATGAGTTATAGTCAGCACATTTCAGACAA 1239
Query 1251 GGGGATGTA-AACAGAAGAAGAACATCAAAGCTTCTTTATATCATGTTGGAGATGGCAGA 1309
|||| ||||||||| ||||| ||| || ||||||| ||| |||
Sbjct 1240 AACAATGTTGAACAGAAGAGGAACAAGAAA--------AT--CATGTTGCAGACCACAGG 1289
Query 1310 GATTGTGATTAAATACTGTTAAGACCTTTTTGATCGATTTGTAACATATGTACAATTGGA 1369
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1290 GATTGTGATTAAATACTGTTGTGACCTTTTTGATCGATTTGTAACATATGTACGATTGGA 1349
Query 1370 TACATCCTAATAAATTTGTTGCTTTCTCTATAATCAAAACGCTTCTAAATTCGTACCTAT 1429
||| |||||||||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 1350 TACCTCCTAATAAATTTGTTACTTTCTCTATAATCAAAACGCTTCTAAATCCATACCTAT 1409
Query 1430 AAAGGCAAGAGCATTGTTGT 1449
||| |||||||| ||| |||
Sbjct 1410 AAATGCAAGAGCGTTGCTGT 1429
> AT4G28480.1 | Symbols: | DNAJ heat shock family protein | chr4:14073042-14075271
FORWARD LENGTH=1495
Length=1495
Score = 806 bits (436), Expect = 0.0
Identities = 880/1085 (81%), Gaps = 67/1085 (6%)
Strand=Plus/Plus
Query 146 TTAATCAGAA-TCAGgaaaagtgaagaagcg-aa-agag-ag---aagaagaagaagGTC 198
|||||| ||| ||||||||||||||||| || || |||| || ||||||||||||||
Sbjct 208 TTAATC-GAATTCAGGAAAAGTGAAGAAACGAAAGAGAGAAGACAAAGAAGAAGAAGGT- 265
Query 199 G-GATGGGAGTGGATTACTACAAAGTCCTCCAAGTTGATCGCAA-CGCCAGCGACGATGA 256
| ||||||||| ||||| ||||| || | || |||||| | || ||| | |||||||||
Sbjct 266 GAGATGGGAGTTGATTATTACAAGGTTTTACAGGTTGATAG-AAGCGCTAACGACGATGA 324
Query 257 TCTTAAGAAAGCTTATCGTAAACTCGCCATGAAATGGCATCCCGACAAAAACCCCAACAA 316
||||||||||||||| | |||||||| |||||||||||||| || || ||||| |||||
Sbjct 325 CCTTAAGAAAGCTTATAGAAAACTCGCTATGAAATGGCATCCTGATAAGAACCCTAACAA 384
Query 317 CAAAAAAGACGCCGAAGCTATGTTCAAACAAATCTCCGAAGCTTACGAGGTACTAAGTGA 376
|||||||||||| || |||| |||||| || ||||| || || ||||| || || || ||
Sbjct 385 CAAAAAAGACGCTGAGGCTAAGTTCAAGCAGATCTCTGAGGCCTACGATGTTCTTAGCGA 444
Query 377 TCCTCAGAAGAAAGCTGTGTATGATCAATATGGTGAAGAAGGTTTGAAAGGGAATGTGCC 436
|||||| |||| |||||| ||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 445 TCCTCAAAAGAGAGCTGTATATGATCAATACGGTGAGGAAGGGTTAAAAGGGAATGTGCC 504
Query 437 ACCT-CC-A-GATG---CTGGTGGAGCTA-CTTATTTCTCTACCGGGGATGG-TCCAACG 488
|||| || | | || || ||||||| | | || ||||| || || ||||| | | ||
Sbjct 505 ACCTCCCAATGCTGCTACTAGTGGAGC-ATCCTACTTCTCAACAGGAGATGGAT-CTTCG 562
Query 489 TCCTTCCGGTTTAACCCGAGAAATGCGGATGATATATTTGCTGAGTTTTTTGGGTTCTCT 548
|| ||| | || |||||||||| ||| ||||||||||| ||||||||||| ||||||||
Sbjct 563 TCTTTCAGATTCAACCCGAGAAGTGCAGATGATATATTCGCTGAGTTTTTCGGGTTCTCG 622
Query 549 AGTCCATTTGGT---GGTGCTGGCGGAAGAGGTGGTACA-AGATTCTCTAGCAGCATGTT 604
| || |||||| |||| ||| || | || || || |||||| ||||| |||||||
Sbjct 623 ACCCCGTTTGGTGGCGGTGGTGGTGGCACTGGAGG-GCAGAGATTCGCTAGCCGCATGTT 681
Query 605 TGGTGATGATATATTTGCTTC-TTTCGGCGAAGGAG--GG-GGCGG-CG-G---TG-GT- 653
|||||||||||| | ||| || ||| || ||||||| || || || | | || |
Sbjct 682 TGGTGATGATATGTATGCCTCGTTT-GGTGAAGGAGCAGGTGGAGGAGGAGCTATGCATC 740
Query 654 GGC-T---CA--AT--GCATCACGGTGGAGCTAGGAAGGCGGCTCCTATCGAAAATAAGT 705
| | || || ||||||| || ||||||||| | |||||||||||| || ||||
Sbjct 741 ATCATCACCATCATCATCATCACGCTGCAGCTAGGAAAGTGGCTCCTATCGAGAACAAGT 800
Query 706 TGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAGAAGATGAGGATCTCTAGGG 765
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 801 TGCCTTGTAGCCTTGAAGATCTCTACAAAGGAACCACCAAGAAGATGAAGATCTCCAGGG 860
Query 766 AGATTGCT-GATGTTAGTGGCAAGACAATGCAAGTGGAAGAGATTTTGACCATT-GATGT 823
|||||| | ||||| || || ||| |||||||||||||||||||| | || ||| || ||
Sbjct 861 AGATTG-TAGATGTCAGCGGTAAGGCAATGCAAGTGGAAGAGATTCTAACGATTGGA-GT 918
Query 824 GAAGCCAGGGTGGAAGAAAGGCACAAAGATCACATTCCCAGAGAAAGGCAATGAGCAACC 883
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 919 GAAACCCGGGTGGAAGAAAGGCACAAAGATCACATTCCCAGAGAAAGGCAATGAGCATCC 978
Query 884 TGGTGTGATTCCAGCGGATTTAGTCTTCATCATTGACGAGAAGCCTCACCCGGT-TTTCA 942
|||||||||||||||||| |||||||||||||||||||||| || || || || ||| |
Sbjct 979 AGGTGTGATTCCAGCGGATCTAGTCTTCATCATTGACGAGAAACCCCATCCAGTGTTT-A 1037
Query 943 CTCGAGAGGGTAACGACCTCG-TAGTCACACAGAA-GATCTCACTTGTTGAGGCCTTGAC 1000
| || ||||| |||||||| | | ||||||||||| | ||||||| | ||| ||||| ||
Sbjct 1038 CCCGTGAGGGCAACGACCT-GATTGTCACACAGAAAG-TCTCACTAGCTGATGCCTTAAC 1095
Query 1001 AGGCTACACAGTGAACCT-GACTACACTTGATGGTCGAAGACTGACAATCCC-AGTCACC 1058
||||||||| | ||| | | | || |||||||| || | ||| |||||||| | ||||
Sbjct 1096 AGGCTACACCGCAAACATAG-CGACCCTTGATGGCCGTACACTTACAATCCCGA-TCAC- 1152
Query 1059 AAA-GTGGTCCATCCCGAGTACGAGGAAGTGGTTCC-AAAGGAAGGAATGCCGTTGCAGA 1116
||| ||| ||||||| ||||| || || |||||||| |||| | |||||||| | ||||
Sbjct 1153 AAATGTGATCCATCCAGAGTATGAAGAGGTGGTTCCTAAAG-AGGGAATGCCACTCCAGA 1211
Query 1117 AAGACCAGACTAAGAAAGGAAACTTGAGGATCAAATTCAACATCAAGTTCCCTA-CAAGA 1175
|||| ||||| |||||||| ||||| |||||||| ||||| |||||||| || | | |||
Sbjct 1212 AAGATCAGACAAAGAAAGGGAACTTAAGGATCAAGTTCAATATCAAGTTTCC-AGCGAGA 1270
Query 1176 TTAAC 1180
|||||
Sbjct 1271 TTAAC 1275
> AT2G20550.1 | Symbols: | HSP40/DnaJ peptide-binding protein
| chr2:8845802-8847309 REVERSE LENGTH=1203
Length=1203
Score = 773 bits (418), Expect = 0.0
Identities = 543/604 (90%), Gaps = 6/604 (1%)
Strand=Plus/Plus
Query 633 GAAGGAGGGGGCGGCGGTGGTGGCTCAATGCATCACGGTGGAGCTAGGAAGGCGGCTCCT 692
|||||||| || || ||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 367 GAAGGAGGAGGTGGTGGTGGTGGCACAATGCATCACGGTGGAGCTAGGAAGGCAGCTCCT 426
Query 693 ATCGAAAATAAGTTGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAGAAGATG 752
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GTTGAAAAAAAGTTGCCTTGTAGCCTTGAAGATCTTTACAAAGGAACCACCAAGAAGATG 486
Query 753 AGGATCTCTAGGGAGATTGCTGATGT-TAGTGGCAAGACAATGCAAGTGGAAGAGATTTT 811
| ||||||||| |||||||||| ||| | ||||||||| | ||| || ||||||||||
Sbjct 487 AAGATCTCTAGAGAGATTGCTGGTGTCTT-TGGCAAGACGACGCAGGTACAAGAGATTTT 545
Query 812 GACCATTGATGTGAAGCCAGGGTGGAAGAAAGGCACAAAGATCACATTCCCAGAGAAAGG 871
||| |||||||||| || |||||||||| ||||||||||||||||||| | ||||||||
Sbjct 546 GACTGTTGATGTGAAACCGGGGTGGAAGACAGGCACAAAGATCACATTCTCGGAGAAAGG 605
Query 872 CAATGAGCAACCTGGTGTGATTCCAGCGGATTTAGTCTTCATCATTGACGAGAAGCCTCA 931
||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 606 AAATGAGCAACCCGGTGTGATACCAGCGGATTTAGTCTTCATCATAGATGAGAAGCCTCA 665
Query 932 CCCGGTTTTCACTCGAGAGGGTAACGACCTCGTAGTCACACAGAAGATCTCACTTGTTGA 991
||||||||||||||||||||||| ||||||||||||||||||||||||||| || | ||
Sbjct 666 TCCGGTTTTCACTCGAGAGGGTAATGACCTCGTAGTCACACAGAAGATCTCAGTTCTCGA 725
Query 992 GGCCTTGACAGGCTACACAGTGAACCTGACTACACTTGATGGTCGAAGACTGACAATCCC 1051
|||||| || |||||||| || ||||||||||||||||||||||| |||||||| |||||
Sbjct 726 GGCCTTTACCGGCTACACCGTCAACCTGACTACACTTGATGGTCGGAGACTGACCATCCC 785
Query 1052 AGTCACCAAAGTGGTCCATCCCGAGTACGAGGAAGTGGTTCCAAAGGAAGGAATGCCGTT 1111
||||| || ||| ||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 786 AGTCAACACTGTGATCCATCCCGAGTATGTGGAAGTGGTTCCAAATGAAGGAATGCCGTT 845
Query 1112 GCAGAAAGACCAGACTAAGAAAGGAAACTTGAGGATCAAATTCAACATCAAGTTCCCTAC 1171
||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 846 GCAGAAAGACCAGGCTAAGAAAGGCAACTTGAGGATCAAATTTAACATCAAGTTCCCTAC 905
Query 1172 AA-GATTAACCTCAGAGCAGAAGACAGGAGTGAAGAAGCTCCTCGGCTGAATTGG-GTTA 1229
|| | |||||||||||||||||||||||| ||||||| || ||||| ||||| || ||||
Sbjct 906 AACG-TTAACCTCAGAGCAGAAGACAGGATTGAAGAAACTTCTCGGATGAAT-GGAGTTA 963
Query 1230 TAAT 1233
|||
Sbjct 964 AAAT 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5