BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480887 Length=1576 Score E Sequences producing significant alignments: (Bits) Value AT2G20570.2 | Symbols: GPRI1 | GBF's pro-rich region-interactin... 1399 0.0 > AT2G20570.2 | Symbols: GPRI1 | GBF's pro-rich region-interacting factor 1 | chr2:8855358-8857756 FORWARD LENGTH=1673 Length=1673 Score = 1399 bits (757), Expect = 0.0 Identities = 916/986 (93%), Gaps = 37/986 (4%) Strand=Plus/Plus Query 590 GTGGATTGGACACCAGAGCTACACAGGAGATTCGTGGAGGCAGTGGAACAGTTAGGAGTG 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 642 GTGGATTGGACACCAGAGCTACACAGGAGATTCGTGGAGGCAGTGGAACAGTTAGGAGTG 701 Query 650 GACAAAGCTGTTCCTTCTCGAATTCTGGAGCTTATGGGAGTCCATTGTCTCACTCGTCAC 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 GACAAAGCTGTTCCTTCTCGAATTCTGGAGCTTATGGGAGTCCATTGTCTCACTCGTCAC 761 Query 710 AACGTTGCTAGTCACCTCCAAAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAG 769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762 AACGTTGCTAGTCACCTCCAAAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAG 821 Query 770 GCCGAAGCGGCTAATTGGACACGTAAAAGGCATATCTATGGAGTAGACACCGGAGGTAAT 829 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| Sbjct 822 GCCGAAGCGGCTAATTGGACACGCAAAAGGCATATCTATGGAGTAGACACCGGTGCTAAT 881 Query 830 ATTAATGGTCGGAGTAAAAATGGATGGCTTGCACCGGCACCCACTCTCGGGTTT------ 883 |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 882 CTTAATGGTCGGACTAAAAATGGATGGCTTGCACCGGCACCCACTCTCGGGTTTCCACCA 941 Query 884 CCACCA--C----C---T------CCACCTGTCCATCACCATCATTTTAGACCCTTGCAT 928 |||||| | | | ||||||||||| |||||||||||||| ||| ||||| Sbjct 942 CCACCACCCGTGGCTGTTGCACCGCCACCTGTCCACCACCATCATTTTAGGCCCCTGCAT 1001 Query 929 GTGTGGGGACATCCCACGGTTGATCAGTCCATCATGCCGCATGTGTGGCCAAAACACTTA 988 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1002 GTGTGGGGACATCCCACGGTTGATCAGTCCATTATGCCGCATGTGTGGCCCAAACACTTA 1061 Query 989 CCTCCACCTTCTACCGTCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCATATTGG 1048 ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 1062 CCTCCGCCTTCTACCGCCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGG 1121 Query 1049 CATCCAATGCATAACGGGGCGACTCCGTATTTGCCGACCGTAGCTACGAGATTTAGAGCA 1108 |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 1122 CATCCAATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACGAGATTTAGAGCA 1181 Query 1109 CCGCCGGTTGCCGGAATCCCACATGCTCTGCCGCCACATCACACAG-TGTACAAACCAAA 1167 ||||| |||||||||||||| |||||||||||||| |||||||| | ||||||||||||| Sbjct 1182 CCGCCAGTTGCCGGAATCCCGCATGCTCTGCCGCCGCATCACAC-GATGTACAAACCAAA 1240 Query 1168 TCATGGCTTTGGTGGTGCTCGTCCTCCGGTGGACTTACATCCGTCAAAAGAGAGCGTGGA 1227 || ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1241 TCTTGGATTTGGTGGTGCTCGTCCTCCGGTAGACTTACATCCGTCAAAAGAGAGCGTGGA 1300 Query 1228 TGCAGCCATAGGAGATGTATTAACGAGGCCATGGCTGCCACTTCCGTTGGGATTGAAGCC 1287 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || Sbjct 1301 TGCAGCCATAGGAGATGTATTGACGAGGCCATGGCTGCCACTTCCGTTGGGATTAAATCC 1360 Query 1288 ACCGGCTGTTGACGGTGTTATGACGGAGCTTCACCGTCACGGTGTCTCCGAGGTTCCTCC 1347 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1361 GCCGGCTGTTGACGGTGTTATGACAGAGCTTCACCGTCACGGTGTCTCTGAGGTTCCTCC 1420 Query 1348 GACAGCGTCTTGTGCCTGAAACGCACAAGCGCCGTAGGCAAGCC-GAACCAAACAAAA-T 1405 ||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| | Sbjct 1421 GACCGCGTCTTGTGCCTGAAACGCACAAGATCCGTAGGCAAGCGAGAACCAAACAAAAAT 1480 Query 1406 TCGACGACATGTCTTTCAATTATTGTACCTTTATTTTTCCAAGGGTTGtttttgtttttt 1465 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1481 TCGACGACATGTCTTTCAATTATTGTACTTTTATTTTTCCAAGGGTTGTTTTTGTTTT-- 1538 Query 1466 tGACCCTTGTTGAGTGTTGAGAGTTTAGGGTCTCTTTACTTAATCGTCCCATGTGACTAA 1525 ||||||||||| |||| |||||| | ||||||||||||||||||||||||||||| Sbjct 1539 -GACCCTTGTTG--TGTTAAGAGTT-A----CTCTTTACTTAATCGTCCCATGTGACTAA 1590 Query 1526 TAAGGAG-CC-TTTTCATATGTATCT 1549 ||||||| || ||||||||||||||| Sbjct 1591 TAAGGAGACCCTTTTCATATGTATCT 1616 Score = 870 bits (471), Expect = 0.0 Identities = 559/599 (93%), Gaps = 16/599 (3%) Strand=Plus/Plus Query 1 GAAGAAAGAGACTTACTTTGGATATC-AAACATGTCTAGCTCTCTATTC----TAAGTCT 55 |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| Sbjct 1 GAAGAAAGAGACTTACTTTGGATATCAAAACATGTCTTGCTCTCTATTCTAATTAAGTCT 60 Query 56 ACCCTATCTATAACATACATAAAtctctctctctctcCGATTATATTTGGATCTACAAGT 115 | |||||||| |||||||||||| | |||| ||| ||||||||||||||||||||||| Sbjct 61 AGCCTATCTACAACATACATAAA---C-CTCTATCTACGATTATATTTGGATCTACAAGT 116 Query 116 GAAGATTGATCGATGTTAGCTCTGTCTCCGGCGACAAGAGATGGTTGCGAGGGAGCGTCA 175 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 117 GAAGATTGATCGATGTTAGCTCTGTCTCCGGCGACAAGAGATGGTTGCGACGGAGCGTCA 176 Query 176 GAGTTTCTTGATACATCGTGTGGATTCACGATCA-A--CCCGGAGGAGGAGGATGAGTTT 232 |||||||||||||| ||||||||||||||||| | | ||||||||||||||| |||||| Sbjct 177 GAGTTTCTTGATACGTCGTGTGGATTCACGATTATAAACCCGGAGGAGGAGGAGGAGTTT 236 Query 233 CCGGACTTT-GCTGACCACGGAGATCTTCTTGACATCATCGACTTCGACGATATATTCGG 291 ||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 237 CCGGA-TTTCGCTGACCACGGTGATCTTCTTGACATCATTGACTTCGACGATATATTCGG 295 Query 292 TGTCGCCGGAGATGTGCTTCCTGACTTGGAGATCGACCCCGAGATCTTATCCGGGGATTT 351 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 296 TGTGGCCGGAGATGTGCTTCCTGACTTGGAGATCGACCCTGAGATCTTATCCGGGGATTT 355 Query 352 CTCTGATCACATGAACGCTTCTTCAACGATTACTACGACGTCGGATAAGACTGATAGTCA 411 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 CTCCAATCACATGAACGCTTCTTCAACGATTACTACGACGTCGGATAAGACTGATAGTCA 415 Query 412 AGGGGAGACTAAC-AAGAGTATTTCAGGGAAAGGTGAAGAAGTTGTAAGCAAAAGAGACG 470 ||||||||||| | ||| ||| ||| ||||||||||||||||| |||||||||||||||| Sbjct 416 AGGGGAGACTA-CTAAGGGTAGTTCGGGGAAAGGTGAAGAAGTCGTAAGCAAAAGAGACG 474 Query 471 ATGCTGCGGCGGAGACGGTGACTTATGACCGTGAAAGTGACCGGAAAAGGAAGTATTCGT 530 ||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | Sbjct 475 ATGTTGCGGCGGAGACGGTGACTTATGACGGTGACAGTGACCGGAAAAGGAAGTATTCCT 534 Query 531 CTTCAGCTTCTTCCAAGAACAATCGGATCAGTAACAACGAAGGGAAGCGAAAGGTGAAG 589 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 535 CTTCAGCTTCTTCCAAGAACAATCGGATCAGTAACAACGAAGGGAAGAGAAAGGTGAAG 593 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77810844750 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5