BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480901
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20670.1 | Symbols: | Protein of unknown function (DUF506) ... 1456 0.0
> AT2G20670.1 | Symbols: | Protein of unknown function (DUF506)
| chr2:8911860-8913534 REVERSE LENGTH=1250
Length=1250
Score = 1456 bits (788), Expect = 0.0
Identities = 903/958 (94%), Gaps = 10/958 (1%)
Strand=Plus/Plus
Query 1 AAAAACTCCGATGGATCGGCAAAATTCCGATGACATCATGAGATTTCTCGATGGAATGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 AAAAACTCCGATGGATCGGCAAAATTCCGATGACATCATGAGATTTCTCGATGGAATGGC 112
Query 61 TAGCTCCGACGATGTTCTTTTCGGTTTTCTCGACGAAGGAAACCAGTCACCGGAAGATTT 120
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 113 TAGCTCCGACGACGTTCTTTTCGGTTTTCTTGACGAAGGAAACCAGTCACCGGAAGA--T 170
Query 121 CTCTGACTCCGCAAACCTCATCGCCGGCGGAGATGACGGCGACGAAGACGACAATAATAA 180
| | ||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 171 -T-T--CTCCGTAAACCTCAACGCCGGCGAAGATGACGGTGACGAAGACGACAATAATAA 226
Query 181 TAATTCTGAAGAAAACAAAGCTTTTTGGCAAGAACAAGAACAACTTCTTCAGGGGACACT 240
||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 227 CAATTCTGAAGATAACAAAGCTTTTTGGCAGGAACACGAACAACTTCTTCAGGGGACACT 286
Query 241 GTATAGGACAAGTTCCATTGAGACAAAGATTAGACAAGCTACGAAAGAAGCGTTGAAACA 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 287 GTATAGGACAAGTTCCATTGAGACAAAGATTAGACAAGCTACAAAAGAAGCGTTGAAACA 346
Query 301 AGTTAAATCAAAAGGTCTTAATTGTGTTTGCCGGCGACCAGTGGACGGCGGTTGTCGGAG 360
||||||||| || |||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 347 AGTTAAATCTAAGGGTCTTTATTGTGTTTGCCGGCGACCAGTGGACGGCGGTTGCCGGAG 406
Query 361 TTGCTTACGTGGCGAAATCTCTAGACACCTCAGAGATGTCGCCGGCTACGATTGCGTCAT 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 407 TTGCTTACGTGGCGAAATCTCTAGACACCTAAGAGATGTCGCCGGCTACGATTGCGTCAT 466
Query 421 CTCCAAATCTAAATGGAGAAGTTGTCAAGACATCCCTGCAGGGGAACACGAATTTATAGA 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 CTCTAAATCTAAATGGAGAAGTTGTCAAGACATCCCTGCAGGGGAACACGAATTTATAGA 526
Query 481 GATCGTGGACCGATCGGGTTCGAAGAAAGGCGAGATGCGAGTGGTGATCGAGTTATCATT 540
||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||
Sbjct 527 GATTGTGGACCGATCGGGTTCAAAGAAAAGCGAGATGCGAGTGGTGATTGAGTTATCATT 586
Query 541 TAGGGCAGAGTTTGAGATTGCAAAAGGTAGTGAAGAGTACAAAAGACTAACCAGCCGATT 600
||||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||
Sbjct 587 TAGGGCAGAGTTTGAGATTGCAAAAGGCAGTGAAGAGTACAAAAGACTTATCAGTCGATT 646
Query 601 GCCGGAGGTTTATGTCGGAAAAACCGAGAGGCTTCGTTCTCTGATCAAGATATTGTGCAT 660
||| |||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 647 GCCTGAGGTTTACGTCGGGAAAACCGAGAGGCTTCGATCTCTGATAAAGATATTGTGCAT 706
Query 661 CGCGGGAAAGAAATGCTTGAGAGACAAGAAAATGCATATGGCTCCTTGGAGAAAACACAA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AGCGGGAAAGAAATGCTTGAGAGACAAGAAAATGCATATGGCTCCTTGGAGAAAACACAA 766
Query 721 GTACATGCAAGCCAAGTGGGTTGGGACATGTGATCGATCTAGCTCCTTGGAAGCGGCGGT 780
||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct 767 GTACATGCAAGCCAAGTGGCTTGGCACATGTGATCGATCTAGCTCCTTGGAAGCTTCGGT 826
Query 781 TTCCGAGGCGATGGAGCCAGAGAATTGGGTGCCGGTGGCGAAGCCTAGGGTTTCTATGTT 840
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 827 TTCCGAGGCCATGGAGCCAGAAAATTGGGTGCCGGTGGCGAAGCCTAGGGTTTCTATGTT 886
Query 841 GAACTACGATGGTCTCTTAGGTAGTTTCTCCGCCGGTCCGGCCATTGTTA-CGGTCGTGT 899
|||||| ||||||||||||||| ||||||| ||||||||||||| ||| | |||||||||
Sbjct 887 GAACTATGATGGTCTCTTAGGTGGTTTCTCTGCCGGTCCGGCCACTGT-AGCGGTCGTGT 945
Query 900 GATATTGT-GTGCTGTGTTTTTT-GATGACTTGTAATTATTAATTGATTAGGGTGAGT 955
|||||| | || || |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 946 GATATTTTTGTACTATGTTTTTTTGATGACTTGTAATTATTAAGTGATTAGGGTGAGT 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46717756710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5