BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480950
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20980.1 | Symbols: MCM10 | minichromosome maintenance 10 | ... 1969 0.0
> AT2G20980.1 | Symbols: MCM10 | minichromosome maintenance 10
| chr2:9011389-9013931 REVERSE LENGTH=1531
Length=1531
Score = 1969 bits (1066), Expect = 0.0
Identities = 1236/1315 (94%), Gaps = 23/1315 (2%)
Strand=Plus/Plus
Query 1 ACGAAATTCAGTCTCCCGCCCCACAAAGAGCAATGTTGTTTTGTGTTCTTGAGCTTCGCT 60
|||||||||||||||||| ||||| ||| ||||||||||||||||||| || |||||
Sbjct 1 ACGAAATTCAGTCTCCCG-CCCAC---GAG--ATGTTGTTTTGTGTTCTTGTGCATCGCT 54
Query 61 GTTGGATCGAGAAATCGAAAAAATGGAAAACGACCAAGAGGATCTTG-ATCTGCTTCTGT 119
|||||||| ||||| | ||||||||||||||||||||||||||||| || |||||||||
Sbjct 55 ATTGGATCGTGAAATTG-AAAAATGGAAAACGACCAAGAGGATCTTGAAT-TGCTTCTGT 112
Query 120 CTCTTGACGATAGGGTTCTCGAAACTCCTCCTGGTTCTCCTTCTGCTGCACCCGGATATC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 CTCTTGACGATAGGGTTCTCGAAACTCCTCCTGGTTCTCCTTCTGCTGCACCCGGATATC 172
Query 180 TCACGGATGATGAATCCCCCAAGCGTAGGGGTCACTCTGACTTGTCTGACTTCAGAAGTG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TCACGGATGATGAATCCCCCAAGCGTAGGGGTCACTCTGACTTGTCTGACTTCAGAAGTG 232
Query 240 TTGTTCAAGATTGCATTGACTATGATCCTAAACCAGTCGCCAAAAACACTAAATCTAAAG 299
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||
Sbjct 233 TTGTTCAAGATTGCATTGACTATAATCCTAAACCAATCGCCAAAAACACTAAACCCAAAG 292
Query 300 GCTCTAACAACTCCAATGCCAACGACCTTGACAAGTTTTCTGGCTTGCGCATTAGGAATC 359
|||| |||||||||||| |||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 293 GCTCCAACAACTCCAATACCAATGACATTGAGAAGTTTTCTGGCTTGCGCATTAGGAATC 352
Query 360 AATTACTTAGCCCTGCAGAGATAAGTGACCTGTTTTCAGATATCCGTTTCGTTCGATTGC 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 353 AATTACTTAGCCCTGCAGAGATAAGTGATCTGTTTTCAGATATCCGTTTCGTTCGATTGC 412
Query 420 CAACAATTAAGAACTTGCTAATGGGTGACAAACTCTCTGGCTGCTGGGCGACAATGGGAG 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CAACAATAAAGAACTTGCTAATGGGTGACAAACTCTCTGGCTGCTGGGCGACAATGGGAG 472
Query 480 TTCTTACAGAGAAAGGACAACCCAAAACAAGCTCCATTGGTCAGCCTTATGGTATATGGA 539
| | ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 473 TGATAACAGAGAAAGGACAACCCAAAACAAGCTCCATTGGGCAGGCTTATGGTATATGGA 532
Query 540 AGATCGGTAGCTTAAATGAAAACACTGTCTCCTTGTTCTTGTTTGGTGATGCTTACAAAA 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 533 AGATCGGTAGCTTAAATGAAAACAATGTCTCCTTGTTCTTGTTTGGTGATGCTTACAAAA 592
Query 600 AGAATGAGACAGAAAAAGCGGGAACGGTTTTCGGTCTGTTTAATTGCTCAGTTCGCAAGG 659
|||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 593 AGAATGAGACAGAAAAGGCAGGAACGGTTTTCGGTCTGTTTAATTGCTCACTTCGCAAGG 652
Query 660 ACAAAGGGGGACGTGACTTCTCATTGAGTGTCAACTCTGCTAAACAAATGGTAAAACTGG 719
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 653 ACAATGGGGGACGTGAGTTCTCATTGAGTGTCAACTCTGCTAAACAAATGGTTAAACTGG 712
Query 720 GGGTTTCGGCTGATTATGGAGTCTGCACAGCGAAGCGGAAAGATGGAACAACTTGTACAT 779
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 713 GGGTTTCAGCTGATTATGGAGTCTGCACAGCAAAGCGGAAAGATGGAACAACTTGTACAT 772
Query 780 CTGTTATAAACAAGCGCCAAGGAGCATTCTGCAAGATTCATAAACTGAATGCATCAGACA 839
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CTGTTGTAAACAAGCGCCAAGGAGCATTCTGCAAGATTCATAAACTGAATGCATCAGACA 832
Query 840 AATTTGCTACAATGAGAACTGAACTCAAAGGAGGGAACTTGAGAACTGCTTTCAGAGATC 899
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 833 AATTTGCTACAATGAGAACTGAACTCAAAGGAGGGAACTTGAGAACAGCGTTCAGAGATC 892
Query 900 CTAAA-TCCCAAGGGATTTACACCGTTGAGCCACCAGCAGATAGAAGCGGAAACAAAAAG 958
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 893 -TAAAATCGCAAGGGATTTACACAGTTGAGCCACCAGCAGATAGAAGCGGAAACAAAAAG 951
Query 959 GCCACTCAGCCTGTTCGAGTACTATCAGTGGAAGGTCTTCGAAAGGCTCTAAGTGGCGTG 1018
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 952 ACCACTCAGCCTGTTCGAGTGCTATCAGTGGAAGGTCTCCGAAAGGCTCTAAGTGGCGCG 1011
Query 1019 GATAAAGTGACCCCTAACGTACACTCACAGGGAATACGTTTCCTGAATGAGATGGCCAGA 1078
||||||||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 1012 GATAAAGTGACCCCTAATGTACACTCACAAGGAATACGTTTCTTGAACGAGATGGCCAGA 1071
Query 1079 CAGAAGGTTTCAAAGAACGTAAACAAGAAATCTGAAGCTGTGAATAAGTCTACAGAGAAG 1138
|| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1072 CAAAAGGCATCAAAGAACGTAAACAAGAAATCTGAAGCTGTGAATAAGTCGACAGAGAAG 1131
Query 1139 AGGAAAGCATCGACAAAAGAAACACAAGTTAAGGGTGAGCCAAAGAGAAAGAAAACAGAG 1198
||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1132 AGGAAAGCATCAACGAAAGAAACACAAGTAAATGGTGAGCCAAAGAGAAAGAAAACAGAG 1191
Query 1199 CACAGGAGGGAAACACC--AGA--------G-AAAA-TGATGGTCCTAGACTTCTGCAGC 1246
||||||| |||||| || ||| | |||| ||||| ||||||| |||||||||
Sbjct 1192 CACAGGAAGGAAACTCCCGAGATTTCCACCGGAAAAATGATGCTCCTAGATTTCTGCAGC 1251
Query 1247 TCTGACGAAGAATGACTCCTCAACAGACAGACATTGTCAAACAGGTACTCAGGCC 1301
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1252 TCTGACGAAGAATGACTCCTCAATAGACAGACATTGTCAAACAGGTACTCAGGCC 1306
Score = 217 bits (117), Expect = 3e-55
Identities = 145/158 (92%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 1299 GCC-GTTTATTCGATGTTGAGATAGACTTTTGTGGTTCTCAATATTAGTCTTGAAACCGG 1357
||| |||||||| || |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1370 GCCGGTTTATTCAATATTGAGATAGA-TTTTGTGGTTCTCAAGATTAGTCTTGAAACCGG 1428
Query 1358 CAAAACAAATATCAGTCATGCAAAAAACCTTTCATTTTAACCAAAATATATAGATTTGAC 1417
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1429 CAAAACAAATATCCGTCATGCAAAAAACCTTCCATTTCAACCAAAATATATAGATG-GAC 1487
Query 1418 ACATTTGTTTAACGCATCAAGCAGTACTATATATATAT 1455
|||||| ||||| |||||||||||||| ||||||||||
Sbjct 1488 ACATTTATTTAATGCATCAAGCAGTACCATATATATAT 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5