BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480951
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20990.3 | Symbols: SYTA | synaptotagmin A | chr2:9014552-90... 1561 0.0
AT2G21010.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 1112 0.0
AT2G21040.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 370 3e-101
> AT2G20990.3 | Symbols: SYTA | synaptotagmin A | chr2:9014552-9018036
FORWARD LENGTH=2222
Length=2222
Score = 1561 bits (845), Expect = 0.0
Identities = 1040/1126 (92%), Gaps = 46/1126 (4%)
Strand=Plus/Plus
Query 886 GAGCAAATCAAGGATCAAGTTGCGAACATGTATCTCTGGCCGAAGACCCTTGTAGTTCCG 945
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1071 GAGCAAATCAAGGATCAAGTTGCGAACATGTATCTCTGGCCTAAGACCCTTGTAGTTCCA 1130
Query 946 ATCCTTGACCCTGCGAAA-GCATTCAGAAGGCCTGTTGGAATCGTCCATGTAAAAGTTGT 1004
|||||||||||||| ||| || |||||||||||||||||||| |||||||| ||||||||
Sbjct 1131 ATCCTTGACCCTGC-AAAGGCGTTCAGAAGGCCTGTTGGAATTGTCCATGTGAAAGTTGT 1189
Query 1005 GAAGGCTGTGGGGCTGAGGAAAAAAGATCTGATGGGTGGGGCAGATCCATACGTGAAAAT 1064
|| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1190 GAGGGCTGTGGGGCTGAGGAAAAAAGATCTGATGGGCGGGGCAGATCCATTCGTGAAAAT 1249
Query 1065 CAAGCTCTCTGAAGATAAGATTCCTTCTAAGAAGACAACAGTTAAACACAAGAATTTGAA 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 CAAGCTCTCTGAAGATAAGATTCCTTCTAAGAAGACAACAGTTAAACACAAGAATTTGAA 1309
Query 1125 TCCTGAATGGAACGAGGAGTTCAAATTCTCGGTCAGAGATCCCCAGACTCAGGTTCTAGA 1184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TCCTGAATGGAATGAGGAGTTCAAATTCTCGGTCAGAGATCCCCAGACTCAGGTTCTAGA 1369
Query 1185 GTTCAATGTGTATGACTGGGAACAGGTTGGGAAGCACGATAAGATGGGTATGAATGTATT 1244
||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 1370 GTTCAGTGTGTATGACTGGGAACAGGTTGGGAATCCCGAGAAGATGGGTATGAATGTATT 1429
Query 1245 AGCTCTGAAAGAAATGGTGCCTAACGAACATAAAGCATTCACCTTGGAACTGCGTAAGAC 1304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1430 AGCTCTGAAAGAAATGGTGCCTGACGAACATAAAGCATTCACCTTGGAACTGCGTAAGAC 1489
Query 1305 TCTGGACGGCGGTGAAGAAGGGCAGACT---GACAAGTATAGGGGGAAGCTGGAGGTCGA 1361
|||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||
Sbjct 1490 TCTGGACGGCGGTGAAGATGGGCAGCCTCCTGACAAGTATAGGGGGAAGCTGGAGGTTGA 1549
Query 1362 ACTCTTGTATAAGCCATTCACGGAGGAAGAAATGC--AAT--CTGT-A-----C--A-G- 1407
||||||||||||||||||||||||||||||||||| || || | | | | |
Sbjct 1550 ACTCTTGTATAAGCCATTCACGGAGGAAGAAATGCCCAAAGGCTTTGAAGAAACGCAAGC 1609
Query 1408 -----A-AA-GCTCCAGAAGGCACACCGGCTACTGGAGGAATGCTTGTGGTAATAGTGCA 1460
| || ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1610 CGTGCAGAAAGCTCCAGAAGGCACACCGGCTGCTGGAGGAATGCTTGTGGTAATAGTGCA 1669
Query 1461 TTCGGCTGAGGATGTTGAAGGAAAGCACCATACGAATCCTTACGTGCGCATCTATTTCAA 1520
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1670 TTCGGCTGAGGATGTTGAAGGAAAGCACCATACCAATCCTTACGTGCGCATCTATTTCAA 1729
Query 1521 AGGGGAGGAGAGAAAAACGAAGCAAGTGAAGAAGAACAGAGACCCAAGGTGGAATGAGGA 1580
||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1730 AGGAGAAGAGAGAAAAACAAAGCACGTGAAGAAGAACAGAGACCCAAGGTGGAATGAGGA 1789
Query 1581 GTTCTCCTTCATGCTCGAGGAGCCTCCAGTCCGTGAGAAGCTGCACGTGGAAGTGCTGAG 1640
|||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1790 GTTCACCTTTATGCTCGAGGAGCCTCCAGTCCGTGAGAAGCTGCACGTTGAAGTGCTGAG 1849
Query 1641 CACCTCTTCCAGGATAGGTTTATTGCATCCCAAGGAAACACTGGGGTACGTGGATATTCC 1700
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1850 CACCTCTTCCAGGATAGGTCTATTGCATCCCAAGGAAACACTGGGGTATGTGGATATTCC 1909
Query 1701 GGTGGTGGACGTGGTGAACAACAAAAGGATGAATCAGAAGTTTCACCTTATTGATTCTAA 1760
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 AGTGGTGGACGTGGTGAACAACAAAAGGATGAATCAGAAGTTTCACCTTATTGATTCTAA 1969
Query 1761 GAACGGAAAGATCCAAATCGAGCTTGAGTGGCGAACTGCCTCTTGATTTCTGA-TTCGTT 1819
|||||||||||||||||||||||| |||||||||||||||||||||||||||| || | |
Sbjct 1970 GAACGGAAAGATCCAAATCGAGCTCGAGTGGCGAACTGCCTCTTGATTTCTGAGTT-GAT 2028
Query 1820 TCGAGAACAAACAAAGAGATCATTGGTTTGAT------A-----T-TGT-T-GT---ACA 1862
|||||||||||||||||||| ||||||||||| | | ||| | || |||
Sbjct 2029 TCGAGAACAAACAAAGAGATAATTGGTTTGATGTTGTTAAAAACTATGTGTTGTTGTACA 2088
Query 1863 AAATGGGCTTTAACTCTGAAAA-CCATCATTCAGATTTGCAGAGCCTTCTTTTATTTGGA 1921
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 2089 AAATGGGCTTTAACTCTTAAAAACCAACATTCAGATTTGCAGAGCCTTCTTTTATTTGGA 2148
Query 1922 TTTGTGTGTTTTCAACTTCTCTTCTCTATGATATTCGGTAGTGTGA 1967
||||||||| ||| ||||||||| ||||||| ||||||||||||||
Sbjct 2149 TTTGTGTGTCTTCGACTTCTCTTTTCTATGAAATTCGGTAGTGTGA 2194
Score = 1203 bits (651), Expect = 0.0
Identities = 690/709 (97%), Gaps = 2/709 (0%)
Strand=Plus/Plus
Query 179 TTGTTGGATCTGAAACGGAAATCAAGATGGGTTTTTTCAGTACGATACTAGGGTTTTGTG 238
||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 250 TTGTTGGATCTGAAACGGAAATCAAAATGGGCTTTTTCAGTACGATACTAGGATTTTGTG 309
Query 239 GATTTGGAGTTGGGATTTC-TCTGGGACTTGTTATTGGTTACGTTCTATTCGTCTACTTG 297
||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 310 GATTTGGAGTTGGGATTTCAT-TGGGACTTGTTATTGGTTACGTTCTCTTCGTCTACTTG 368
Query 298 CTGCCCAACGACGTCAAGGATCTTGAAATTCGTTCAATAGCTGACCAAGATCCCAAAGCT 357
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 369 CTCCCCAACGACGTCAAGGATCCTGAAATTCGTTCAATAGCTGACCAAGATCCCAAAGCT 428
Query 358 ATGCTACGGATGCTTCCAGAGATACCTCTATGGGTCAAAAATCCCGATTTCGATCGTGTT 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 429 ATGCTACGGATGCTTCCAGAGATACCTCTATGGGTCAAAAATCCGGATTTCGATCGTGTT 488
Query 418 GACTGGATTAACAGATTTCTCGAGTACATGTGGCCTTATCTCGACAAGGCCATATGTAAG 477
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GACTGGATAAACAGATTTCTCGAGTACATGTGGCCTTATCTCGACAAGGCCATATGTAAG 548
Query 478 ACTGCAAAGAATATAGCAAAGCCGATCATTGAGGAGCAGATACCAAAGTACAAGATTGAC 537
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 549 ACTGCAAAGAATATAGCAAAACCGATCATTGAGGAGCAGATACCAAAGTACAAGATTGAC 608
Query 538 TCTGTTGAATTTGAAACACTTACACTAGGCTCTTTACCCCCTACATTTCAAGGGATGAAA 597
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 609 TCTGTTGAATTTGAAACACTTACTCTAGGCTCTTTACCCCCTACATTTCAAGGGATGAAA 668
Query 598 GTTTATCTCACGGATGAGAAAGAGTTGATTATGGAACCATGCTTGAAATGGGCCTCAAAT 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 669 GTTTATCTCACGGATGAGAAAGAGTTGATTATGGAACCATGCTTGAAATGGGCCGCAAAT 728
Query 658 CCCAATATCTTGGTTGCCATCAAGGCATTTGGGTTGAAGGCAACAGTTCAGGTGGTCGAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CCCAATATCTTGGTTGCCATCAAGGCATTTGGGTTGAAGGCAACAGTTCAGGTGGTCGAT 788
Query 718 CTGCAAGTTTTTGCACAGCCCCGTATCACTCTCAAGCCATTAGTCCCAAGTTTTCCTTGT 777
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 789 CTGCAAGTTTTTGCTCAGCCTCGTATCACTCTCAAGCCATTAGTTCCAAGTTTCCCTTGT 848
Query 778 TTTGCCAACATCTATGTGTCTCTTATGGAGAAGCCACACGTTGATTTTGGACTGAAGCTT 837
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 849 TTTGCCAATATCTATGTGTCTCTTATGGAGAAGCCACATGTTGATTTTGGACTGAAGCTT 908
Query 838 GGTGGAGCAGATCTTATGTCAATCCCTGGCCTCTACAGATTTGTTCAGG 886
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GGTGGAGCAGATCTTATGTCAATCCCTGGCCTCTACAGATTTGTTCAGG 957
Score = 196 bits (106), Expect = 5e-49
Identities = 158/180 (88%), Gaps = 15/180 (8%)
Strand=Plus/Plus
Query 1 TTGCTTGCCTCCAGGGCTTCACGATTCTCACGACATCTGTTTATCTTCTCCGATTTCCAC 60
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 TTGCTTGCCTTCTGGGCTTCACGATTCTCACGACATCTGTTTATCTTCTCCGATTTCCAC 86
Query 61 GTCCATGGATCTCAGTCAATGCTCCTTAATCTCTCTTACCGATTAGTC-AATC-CC-C-A 116
||||||||||||||||||||| ||||||||||||||| ||||||||| |||| || | |
Sbjct 87 GTCCATGGATCTCAGTCAATGTTCCTTAATCTCTCTTTTCGATTAGTCCAATCTCCACTA 146
Query 117 --CTCAGA--TC-G---G-TTCCGACGCCGGC-GAACTCTGTCCGTCTTGATCTGTGTTT 166
||| || || | | ||||||||||| | ||||| |||||||||||||||||||||
Sbjct 147 ATCTCTGACCTCAGATCGCTTCCGACGCCG-CTGAACTGTGTCCGTCTTGATCTGTGTTT 205
> AT2G21010.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr2:9020944-9021870 FORWARD LENGTH=771
Length=771
Score = 1112 bits (602), Expect = 0.0
Identities = 707/759 (93%), Gaps = 2/759 (0%)
Strand=Plus/Plus
Query 1049 ATCCATACGTGAAAATCAAGCTCTCTGAAGATAAGATTCCTTCTAAGAAGACAACAGTTA 1108
||||||||||| ||||| |||||||||||||||| ||| | |||||||||||||| ||||
Sbjct 14 ATCCATACGTGCAAATCGAGCTCTCTGAAGATAAAATTTCATCTAAGAAGACAACTGTTA 73
Query 1109 AACACAAGAATTTGAATCCTGAATGGAACGAGGAGTTCAAATTCTCGGTCAGAGATCCCC 1168
|||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 74 AACACAAGAATTTGAACCCTGAATGGAATGAGGAATTCAAATTCTCGGTCAGAGATCCCA 133
Query 1169 AGACTCAGGTTCTAGAGTTCAATGTGTATGACTGGGAACAGGTTGGGAAGCACGATAAGA 1228
|||||||||||||||| ||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 134 AGACTCAGGTTCTAGAATTCAATGTGTATGGCTGGGAAAAGATTGGGAAGCACGATAAGA 193
Query 1229 TGGGTATGAATGTATTAGCTCTGAAAGAAATGGTGCCTAACGAACATAAAGCATTCACCT 1288
|||||||||||||||||||| |||||||| ||| |||| | |||| ||||||||||||||
Sbjct 194 TGGGTATGAATGTATTAGCTTTGAAAGAATTGGCGCCTGATGAACGTAAAGCATTCACCT 253
Query 1289 TGGAACTGCGTAAGACTCTGGACGGCGGTGAAGAAGGGCAGACTGACAAGTATAGGGGGA 1348
||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||
Sbjct 254 TGGAACTGCGTAAGACTCTGGACGGTGGTGAAGAAGGGCAGCCTGGCAAGTATAGGGGGA 313
Query 1349 AGCTGGAGGTCGAACTCTTGTATAAGCCATTCACGGAGGAAGAAATGCAATCTGTACAGA 1408
|||||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 314 AGCTGGAGGTTGAACTCTTGTATAAGCCATTCACGGAGGAAGAAATGCAAGCGGTTCAGA 373
Query 1409 AAGCTCCAGAAGGCACACCGGCTACTGGAGGAATGCTTGTGGTAATAGTGCATTCGGCTG 1468
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 374 AAGCTCCAGAAGGCACACCGGTTGCTGGAGGAATGCTTGTGGTAATAGTGCATTCGGCTG 433
Query 1469 AGGATGTTGAAGGAAAGCACCATACGAATCCTTACGTGCGCATCTATTTCAAAGGGGAGG 1528
||||||||||||||||||| ||||| |||||||| |||| |||||| |||||||||||||
Sbjct 434 AGGATGTTGAAGGAAAGCATCATACCAATCCTTATGTGCACATCTACTTCAAAGGGGAGG 493
Query 1529 AGAGAAAAACGAAGCAA-GTGAAGAAGAACAGAGACCCAAGGTGGAATGAGGAGTTCTCC 1587
|||||||||| ||| || ||||||||||||| |||||||| |||||||||||||||||||
Sbjct 494 AGAGAAAAACAAAG-AATGTGAAGAAGAACAAAGACCCAAAGTGGAATGAGGAGTTCTCC 552
Query 1588 TTCATGCTCGAGGAGCCTCCAGTCCGTGAGAAGCTGCACGTGGAAGTGCTGAGCACCTCT 1647
|| |||||||||||||||||||||| |||||| |||||||||||||| | |||||||||
Sbjct 553 TTTATGCTCGAGGAGCCTCCAGTCCATGAGAAATTGCACGTGGAAGTGTTTAGCACCTCT 612
Query 1648 TCCAGGATAGGTTTATTGCATCCCAAGGAAACACTGGGGTACGTGGATATTCCGGTGGTG 1707
|| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 613 TCTAGGATAGGTCTATTGCATCCCAAGGAAACACTAGGGTACGTGGATATTCCGGTGGTG 672
Query 1708 GACGTGGTGAACAACAAAAGGATGAATCAGAAGTTTCACCTTATTGATTCTAAGAACGGA 1767
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 673 GACGTGGTGAACAACAAAAGGATGAATCAGAAGTTTCACCTTATTGATTCTAAGAATGGA 732
Query 1768 AAGATCCAAATCGAGCTTGAGTGGCGAACTGCCTCTTGA 1806
|||||||||||||||||||| |||| |||||||| ||||
Sbjct 733 AAGATCCAAATCGAGCTTGACTGGCAAACTGCCTTTTGA 771
> AT2G21040.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr2:9026157-9027310 FORWARD LENGTH=786
Length=786
Score = 370 bits (200), Expect = 3e-101
Identities = 247/270 (91%), Gaps = 1/270 (0%)
Strand=Plus/Plus
Query 1393 ATGCAATCTGTACAGAAAGCTCCAGAAGGCACACCGGCTACTGGAGGAATGCTTGTGGTA 1452
|||||| | || ||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1 ATGCAAGCGGTTCAGAAAGCTCCAGAAGGCACACCGGCTGCTGGAGGAATGTTTGTGGTA 60
Query 1453 ATAGTGCATTCGGCTGAGGATGTTGAAGGAAAGCACCATACGAATCCTTACGTGCGCATC 1512
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 61 ATAGTGCATTCGGCTGAGGATGTTGAAGGAAAGCACCATACCAATCCTTACGTGCACATC 120
Query 1513 TATTTCAAAGGGGAGGAGAGAAAAACGAAGCAAGTGAAGAAGAACAGAGACCCAAGGTGG 1572
|| ||||||||||||||||||||||| ||||| || |||||||||| |||||||| ||||
Sbjct 121 TACTTCAAAGGGGAGGAGAGAAAAACAAAGCATGTAAAGAAGAACAAAGACCCAAAGTGG 180
Query 1573 AATGAGGAGTTCTCCTTCATGCTCGAGGAGCCTCCAGTCCGTGAGAAGCTGCACGTGGAA 1632
||||||||||||||||| ||||| |||||||||||| ||| |||||| |||||||| ||
Sbjct 181 AATGAGGAGTTCTCCTTTATGCTGGAGGAGCCTCCAATCCATGAGAAAATGCACGTGAAA 240
Query 1633 GTGCTGAGCACCTCTTCCAGGATAG-GTTT 1661
||| | ||||||||||||||||||| ||||
Sbjct 241 GTGTTTAGCACCTCTTCCAGGATAGTGTTT 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97439257845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5