BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480954 Length=798 Score E Sequences producing significant alignments: (Bits) Value AT2G21060.1 | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich pr... 987 0.0 > AT2G21060.1 | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich protein 2B | chr2:9036793-9037650 REVERSE LENGTH=858 Length=858 Score = 987 bits (534), Expect = 0.0 Identities = 748/840 (89%), Gaps = 60/840 (7%) Strand=Plus/Plus Query 1 TTAGTTCGTCGGAGAG-TTTCTGAATCATAATGAGC---GGCGGCGACGAAAACATGAGT 56 |||||||||||||||| ||| || |||| ||||||| || || |||| ||||||||| Sbjct 35 TTAGTTCGTCGGAGAGATTT-TG-ATCAGAATGAGCGGAGGAGGAGACGTGAACATGAGT 92 Query 57 GGTGGAGAGAGACGCAAGGGAACGGTTAAGTGGTTTGATACGCAGAAGGGGTTTGGTTTC 116 |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 93 GGTGGAGACAGACGCAAGGGAACGGTGAAGTGGTTTGATACACAGAAGGGGTTTGGTTTC 152 Query 117 ATCACACCTAACGACGGTGGTGACGATCTCTTCGTTCACCAGTCTTCCATCAGATCTGAA 176 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 153 ATCACACCTAGCGACGGTGGTGACGATCTCTTCGTTCACCAGTCTTCCATCAGATCTGAA 212 Query 177 GGATTTCGTAGCCTCGCCGCTGATGAATCTGTTGAGTTCGAGGTTGAGGTTGACAACACC 236 ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| || Sbjct 213 GGATTTCGTAGCCTCGCAGCTGAGGAATCTGTTGAGTTCGACGTTGAGGTTGACAACTCC 272 Query 237 GGCCGTCCCAAGGCTGTTGAAGTGTCTGGACCCGACGGTGCTCCCGTTCAGGGAAATAGC 296 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| Sbjct 273 GGCCGTCCCAAGGCTATTGAAGTGTCTGGACCCGACGGTGCTCCCGTTCAGGGTAACAGC 332 Query 297 ---GGTGGTGGTTCATCtggtggacgcggtggtttt---ggcggtggtggaagaggaggc 350 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 333 GGTGGTGGTGGTTCATCTGGTGGACGCGGTGGTTTTGGCGGCGGTGGTGGAAGAGGAGGG 392 Query 351 ggacgtggtggtggaggttacggaggaggcggtggttatggtggtAGAGGAAGCGGTGGC 410 ||||||||||| ||| | ||||||||| ||||||||||| ||||||||||||||| Sbjct 393 GGACGTGGTGGAGGAAGCTACGGAGGA------GGTTATGGTGGAAGAGGAAGCGGTGGC 446 Query 411 CGTGGAGGAGGTGGCGGTGATAATTCTTGCTTTAAGTGCGGTGAACCAGGTCACATGGCG 470 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 447 CGTGGAGGAGGTGGTGGTGATAATTCTTGCTTTAAGTGCGGTGAACCAGGTCACATGGCG 506 Query 471 AGAGAATGCTCTCAAggtggtggtggtggtggatacagtggaggtggtggtggtggtgga 530 ||||||||||||||||||||||| || |||||| ||||| || || | ||||||| Sbjct 507 AGAGAATGCTCTCAAGGTGGTGGAGG------ATACAGCGGAGGCGG-GG-G-TGGTGGA 557 Query 531 aggtacgggtctggcggcgg---agg------tggtgg------aAGCTGCTACAGCTGT 575 |||||||||||||||||||| ||| |||||| |||||||||||||||| Sbjct 558 AGGTACGGGTCTGGCGGCGGCGGAGGAGGAGGTGGTGGTGGCTTAAGCTGCTACAGCTGT 617 Query 576 GGAGAGTCTGGGCATTTTGCAAGGGATTGCACTAGCGGTGGTGCTCGTTGAAGCAAACCA 635 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 GGAGAGTCTGGGCACTTTGCAAGGGATTGCACTAGCGGTGGTGCTCGTTGAAGCAAACCA 677 Query 636 GACGGTGAAGAAGGGGTAAATCAGTCATCGATCCCTCTTCTCAC-TGACTTCTATCAAAT 694 ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 678 GACTGTGAAGAAGGGGTAAATCAGTCATCGATCCCTCTTCTC-CGTGACTTCTATCAAAT 736 Query 695 -ATTATCTATCTTTTGTTATTCGACTCTCT-CA-TGTT-TT--CGGA-TTTATT--T-A- 743 ||||||||||||||||||||||||||||| || |||| || |||| |||||| | | Sbjct 737 TATTATCTATCTTTTGTTATTCGACTCTCTTCAATGTTGTTTTCGGAATTTATTAATTAG 796 Query 744 -A-TTA-GG--GTTATGGTTATGGTGCCTTGTGATTTGAGTAAGAATTTGGATTGGTTTT 798 | || || |||||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct 797 GACTTGTGGTTGTTATGGTTATGGTTCCTTGTGATTTGAGAAAGAAACTGGATTGGTTTT 856 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38830995631 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5