BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481027 Length=756 Score E Sequences producing significant alignments: (Bits) Value AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum... 977 0.0 AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein | chr4:182... 577 6e-164 > AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum retrieval protein 1B | chr2:9242801-9244833 FORWARD LENGTH=988 Length=988 Score = 977 bits (529), Expect = 0.0 Identities = 609/648 (94%), Gaps = 4/648 (1%) Strand=Plus/Plus Query 86 TTCTTTACCATCCGTTGCAAGAATCACAATGGATGGAAGTGGTGGTGACAGTGGTTCGAT 145 ||||| |||||||||| ||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 119 TTCTTCACCATCCGTTTCAAGAATAACAATGGAAGGAAGCGGTGGTGACAGTGGTTCGAT 178 Query 146 GGCTACACCTGTACAAAAGAAGGTACATGAGGCATGGAGGGTTTACCAATATTATCTGGA 205 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 179 GGCTACGCCTGTACAAAAGAAAGTACATGAGGCATGGAGGGTTTACCAATATTATCTGGA 238 Query 206 CAAGACTACACCTCATTCAACTAACAGGTGGATCGGAACACTCGTCGTCTTTCTTATCTA 265 |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 239 CAAGACTACACCTCATTCAACTAACAGGTGGATCGGAACACTTGTTTTCTTTCTTATCTA 298 Query 266 CTGTTTGAGGGTTTACTCTATTCAGGGATTCTACATCATCTCCTATGGTCTTGGAATCTA 325 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 299 CTGTTTGAGGGTTTACTCTATTCACGGATTCTACATCATCTCCTATGGTCTTGGAATCTA 358 Query 326 CCTCCTGAATCTGCTTATCGGGTTCTTGTCCCCTCTTGTTGATCCTGAGCTCGAAGTCA- 384 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || | Sbjct 359 CCTCCTGAATCTGCTTATCGGGTTTTTGTCTCCTCTTGTTGATCCTGAGCTCGAGGT-AT 417 Query 385 CTGATGGAGCTACTCTCCCTACTCGAGGTTCTGATGAGTTCAAGCCATTTATCCGTCGAC 444 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | Sbjct 418 CTGATGGAGCTACTCTGCCTACTCGAGGTTCTGATGAGTTCAAGCCATTTATCCGCCGTC 477 Query 445 TGCCAGAGTTTAAATTCTGGTACTCCATGACTAAGGCATTCTGCATAGCATTTCTCATGA 504 | || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 478 TCCCGGAGTTTAAATTCTGGTACTCCATGACTAAGGCATTCTGCATAGCCTTTCTTATGA 537 Query 505 CGTTCTTCTCGGTCTTTGACGTTCCCGTCTTCTGGCCTATATTACTTTGCTACTGGGTTG 564 | ||||||||||| ||||| ||||||||||||||||| ||| | |||||||||||||| | Sbjct 538 CATTCTTCTCGGTGTTTGATGTTCCCGTCTTCTGGCCCATACTGCTTTGCTACTGGGTCG 597 Query 565 TTCTCTTTGTCCTCACCATGAGACGCCAAATCGCCCACATGATCAAGCACAAGTACATTC 624 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 598 TTCTCTTTGTCCTCACCATGAGACGCCAAATAGCCCACATGATCAAGCACAAGTACATTC 657 Query 625 CTTTCAGCATCGGAAAACAGAAATATAGCGGCCGGAGATCTTCTGCGAGCAGCAGCGGCG 684 |||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| Sbjct 658 CTTTCAGCATCGGAAAACAGAAATATAGCGGCCGGAAATCTTCTGCGAACAGCGGCGGCG 717 Query 685 GCTCTCGTGCTGATTGATTTCGA-TTGTCAGCCACGTTCTCTGCAGAA 731 ||||||||||||||||||||| | ||| ||||||| || ||||||||| Sbjct 718 GCTCTCGTGCTGATTGATTTCAACTTG-CAGCCACATTTTCTGCAGAA 764 > AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein | chr4:18263617-18265771 FORWARD LENGTH=957 Length=957 Score = 577 bits (312), Expect = 6e-164 Identities = 478/557 (86%), Gaps = 15/557 (3%) Strand=Plus/Plus Query 114 ATGGATGGAAGTGGTGGTGACAGTGGTTCGA-TGGCTACACCTGTACAAAAGAAG-GTAC 171 ||||| | ||| || ||||| |||||||| | |||| |||||||| ||| || | | || Sbjct 142 ATGGACGAAAGCGGAGGTGATAGTGGTTC-AGTGGCCACACCTGTTCAACAG-CGAGCAC 199 Query 172 ATGAGGCATGGAGGGTTTACCAATATTATCTGGACAAGACTACACCTCATTCAACTAACA 231 |||||||||||||| |||||||| | ||||| |||||||||||||||||| ||| | ||| Sbjct 200 ATGAGGCATGGAGGATTTACCAACACTATCTTGACAAGACTACACCTCATGCAAATTACA 259 Query 232 GGTGGATCGGAACACTCGTCGTCTTTCTTATCTACTGTTTGAGGGTTTACTCTATTCAGG 291 | ||||| ||||| || |||||| |||||||||||||||||||||||||| |||||||| Sbjct 260 GATGGATTGGAACTCTTGTCGTCGCTCTTATCTACTGTTTGAGGGTTTACTATATTCAGG 319 Query 292 GATTCTACATCATCTCCTATGGTCTTGGAATCTACCTCCTGAATCTGCTTATCGGGTTCT 351 | |||||||||||| |||||||||||||||||||||| || ||||||||||||||||||| Sbjct 320 GTTTCTACATCATCGCCTATGGTCTTGGAATCTACCTTCTCAATCTGCTTATCGGGTTCT 379 Query 352 TGTCCCCTCTTGTTGATCCTGA-GCTCGAAG--TCACTGATGGAGC-TACTCTCCCTACT 407 |||||||||||||||||||||| ||| | | || ||||||| || | |||| |||||| Sbjct 380 TGTCCCCTCTTGTTGATCCTGAAGCTGGTGGGGTCTCTGATGG-GCCTTCTCTGCCTACT 438 Query 408 CGAGGTTCTGATGAGTTCAAGCCATTT-ATCCGTCGACTGCCAGAGTTTAAATTCTGGTA 466 |||||||||||||||||||||| ||| || || || || || ||||| ||||||||||| Sbjct 439 AGAGGTTCTGATGAGTTCAAGCC-TTTCATTCGCCGTCTCCCCGAGTTCAAATTCTGGTA 497 Query 467 CTCCATGACTAAGGCATTCTGCATAGCATTTC-TCATGACGTTCTTCTCGGTCTTTGACG 525 ||||||||| ||||| ||||||||||| |||| ||||||| ||||||||||| ||||||| Sbjct 498 CTCCATGACAAAGGCTTTCTGCATAGC-TTTCCTCATGACATTCTTCTCGGTGTTTGACG 556 Query 526 TTCCCGTCTTCTGGCCTATAT-TACTTTGCTACTGGGTTGTTCTCTTTGTCCTCACCATG 584 |||| || || ||||| || | | || ||||| ||| | ||||||||||| ||||||||| Sbjct 557 TTCCTGTGTTTTGGCCAAT-TCTGCTGTGCTATTGGATCGTTCTCTTTGTTCTCACCATG 615 Query 585 AGACGCCAAATCGCCCACATGATCAAGCACAAGTACATTCCTTTCAGCATCGGAAAACAG 644 |||||||| |||||||||||||||||| |||| ||||| ||||||||| |||| |||||| Sbjct 616 AGACGCCAGATCGCCCACATGATCAAGTACAAATACATCCCTTTCAGCTTCGGCAAACAG 675 Query 645 AAATATAGCGGCCGGAG 661 |||||| | || ||||| Sbjct 676 AAATATGGTGGACGGAG 692 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36721161457 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5