BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481062
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21970.1 | Symbols: SEP2 | stress enhanced protein 2 | chr2:... 977 0.0
> AT2G21970.1 | Symbols: SEP2 | stress enhanced protein 2 | chr2:9356983-9357916
REVERSE LENGTH=856
Length=856
Score = 977 bits (529), Expect = 0.0
Identities = 631/679 (93%), Gaps = 11/679 (2%)
Strand=Plus/Plus
Query 1 AAATACTCACTTTCCTCAAAAGATTCCTCGGATCATCAG-AAATGGCTATGGCTACGCGA 59
|||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 AAATTCTCACTTTACTCAAAAGATTCCTCGGATCATCAGAAAATGGCTATGGCTACGCGA 60
Query 60 GCGATTCGTTGCCAGTTACCGTCACCGAGATCTT-TATCTCCTAGATGCGAGTCATCGGA 118
|||||||| | |||||||||||||||||||| || | ||||||||||||| ||||||||
Sbjct 61 GCGATTCGATACCAGTTACCGTCACCGAGAT-TTAGAGCTCCTAGATGCGAATCATCGGA 119
Query 119 ACCAATCAAGCAGATTCAGATACAGCAACGACCAAGAGGTGGCGATTTAGCCGAGAACGG 178
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACCGATTAAGCAGATTCAGATCCAGCAACGACCAAGAGGTGGCGATTTAGCCGAGAACGG 179
Query 179 GAAGATCGTGCTTCAGCCGAGACTTTGCACGCTGAGATCTTATGGATCTGATATGGTCAT 238
|||||||||||| || || || ||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAAGATCGTGCTCCAACCAAGGCTTTGCACGCTGAGATCTTATGGATCTGATATGGTCAT 239
Query 239 CGCTAAAAAAGACGGCGGAGATGGT---GGAGGAGGATCTGAGGTTGAGTTATCATCGTC 295
||||||||| ||||||||||||||| |||||||||||||| |||||| | | | ||||
Sbjct 240 CGCTAAAAAGGACGGCGGAGATGGTGGAGGAGGAGGATCTGATGTTGAG-T-T-AGCGTC 296
Query 296 TCCGTTTTTTGAGACGCTTACTGATTACATAGAGAGTTCGAAGAAGAGTCAAGACTTT-G 354
||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |
Sbjct 297 TCCGTTTTTTGAGACGCTTACGGATTACATAGAGAGTTCGAAGAAGAGTCAGGA-TTTCG 355
Query 355 AAACCATCTCTGGAAGACTCGCCATGATTGTGTTTGCGGCGACGGTGACGGAGGAGATTG 414
|||||||||| || ||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 356 AAACCATCTCCGGTAGACTCGCCATGATTGTATTTGCGGTGACGGTGACGGAGGAGATTG 415
Query 415 TTACGGGGAATTCGTTGTTTAAGAAACTTGATGTGGAAGGATTGAGTGAAGCTATTGGAG 474
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 416 TTACGGGGAACTCGTTGTTTAAGAAACTAGATGTGGAAGGATTGAGTGAAGCTATTGGAG 475
Query 475 CTGGTCTCGCCGCGATGGGATGCGCGGCGATATTCGCGTGGTTAACGATTTCTCGGAACC 534
||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 476 CTGGTCTCGCCGCGATGGGATGCGCGGCGATGTTTGCTTGGTTAACGATTTCTCGGAACA 535
Query 535 GAGTTGGACGGATCTTTACAGTGAGTTGTAACTCGTTTATTGACTCGTTGGTTGATCAGA 594
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 536 GAGTCGGACGGATCTTTACAGTGAGTTGCAACTCGTTCATTGACTCGTTGGTTGATCAGA 595
Query 595 TCGTTGATGGGTTGTTCTATGACACAAAGCCTAGTGATTGGTCTGATGATCTTTAAGTTC 654
|||||||||| ||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 596 TCGTTGATGGACTGTTCTACGATACCAAGCCTAGTGATTGGTCTGATGATCTTTAAGTTC 655
Query 655 ATAAATGATAAATACCACT 673
|||||||||||||||||||
Sbjct 656 ATAAATGATAAATACCACT 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37323971221
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5