BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481099
Length=1591
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22360.1 | Symbols: | DNAJ heat shock family protein | chr2... 2324 0.0
AT4G39960.1 | Symbols: | Molecular chaperone Hsp40/DnaJ family... 1240 0.0
> AT2G22360.1 | Symbols: | DNAJ heat shock family protein | chr2:9497595-9500615
FORWARD LENGTH=1615
Length=1615
Score = 2324 bits (1258), Expect = 0.0
Identities = 1493/1601 (93%), Gaps = 37/1601 (2%)
Strand=Plus/Plus
Query 1 TTCTAGCGAACTCctttcattcgttttctctcta--ctcatcgcttttcttatctctctc 58
|||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||
Sbjct 21 TTCTAGCGAACTCCTTTCATACGTTTTCTCTCTACTCTCATCGCTTTTCTTA--TCTCTC 78
Query 59 tcggagctcttccttcttcCGTCGTCTACCATTGATTACGTGTGTTGCAGGGAGGTTAA- 117
|||||| | |||||||||||| ||||||||||||| | | || | ||| | ||
Sbjct 79 TCGGAG------C-TCTTCCGTCGTCCACCATTGATTACGGGAG-TGTATTGAGCTAAAT 130
Query 118 ATGGCTCTAATACAATTTGGAAGTACATGTGTTGCTCAATGGAGTATTCGTCCTCAATTT 177
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 ATGGCTATAATACAACTTGGAAGTACATGTGTTGCTCAATGGAGTATTCGTCCTCAATTT 190
Query 178 GCTGTGAGAGCTTATTATCCCAGCAGACTCGAATCAAGTCGCCAACAAAATCCCATG-AG 236
|| || ||||||||||||||||||||| ||||||||| |||||| |||||| ||| | ||
Sbjct 191 GCAGTCAGAGCTTATTATCCCAGCAGAATCGAATCAACTCGCCATCAAAATTCCA-GTAG 249
Query 237 CCAAATAAATTGTTTGGGAGCTTCAAGGTCGAGTATGTTCTCACATGGGTCCTTGCCCTT 296
|||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 250 CCAAGTAAATTGTTTGGGAGCTTCAAAGTCGAGTATGTTCTCACATGGGTCATTGCCCTT 309
Query 297 CTTGTCCATGACGGGAATGTCTAGAAATATGCA---TCCTCGCAGAGGATCTCGCTTCAC 353
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 310 CTTGTCCATGACGGGAATGTCCAGAAATATGCATCCTCCTCGCAGAGGATCTCGCTTCAC 369
Query 354 TGTTAGAGCTGATGCAGATTACTATTCGGTACTCGGAGTTTCGAAAAATGCAACCAAATC 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 370 TGTTAGAGCTGATGCAGATTACTATTCGGTACTCGGAGTTTCGAAAAATGCAACCAAAGC 429
Query 414 TGAGATTAAAAGCGCTTATCGGAAGCTGGCTAGGAATTACCATCCAGATGTGAACAAGGA 473
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 430 TGAGATTAAAAGCGCTTATCGGAAGCTGGCTAGGAATTACCATCCGGATGTGAACAAGGA 489
Query 474 TCCTGGTGCAGAAGAGAAATTCAAAGAAATAAGTAATGCATACGAGGTTTTATCAGATGA 533
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 490 TCCTGGCGCAGAAGAGAAATTCAAAGAAATAAGTAACGCATATGAGGTTTTATCAGATGA 549
Query 534 TGAAAAGAAATCTCTTTACGATAGGTATGGTGAGGCCGGACTAAAAGGCGCTGCTGGAAT 593
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 550 TGAAAAGAAATCTCTTTACGATAGGTATGGTGAGGCCGGACTTAAAGGCGCTGCTGG-AT 608
Query 594 GGGTGGC-ATGGGGGATTTTAGTAATCCGTTCGATCTATTCGAGTCATTATTCGAAGGCA 652
|||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 609 --TTGGCAAT-GGGGATTTTAGTAATCCGTTCGATCTATTCGACTCATTATTCGAAGGCT 665
Query 653 TGGGTGGGATGGGAGGAGGTGGAACGGGTAGAGGTTCAAGAAGCAGAGCCGTGGATGGTC 712
| ||| || | | ||| | |||||||||||||||||||||||| ||||||||||
Sbjct 666 TCGGT-GG-T--G-GGA--T-----GGGTAGAGGTTCAAGAAGCAGAGCTGTGGATGGTC 713
Query 713 AAGACGAGTATTACACACTAATCTTAAACTTCAAAGAAGCGGTTTTCGGGATGGAAAAAG 772
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 714 AAGACGAGTATTACACGCTAATCTTAAACTTCAAAGAAGCGGTTTTCGGAATGGAGAAAG 773
Query 773 AAATAGAGATATCACGGCTCGAGAGCTGCGGGACTTGTGAAGGTTCAGGTGCAAAACCGG 832
||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 774 AAATAGAGATATCCCGGCTCGAGAGCTGTGGGACATGTGAAGGTTCAGGTGCAAAACCTG 833
Query 833 GAACCAAACCGACCAAATGCACCACGTGTGGCGGACAAGGTCAAGTGGTTTCATCAGCAA 892
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 834 GAACCAAACCGACCAAATGCACCACGTGTGGCGGACAAGGCCAAGTGGTTTCAGCAGCTA 893
Query 893 GAACTCCTCTCGGCGTGTTCCAACAAGTCATGACTTGCTCATCCTGTAACGGCACTGGAG 952
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 894 GAACTCCTCTGGGCGTGTTCCAACAAGTCATGACTTGCTCGTCCTGTAATGGCACTGGAG 953
Query 953 AGATCTCGACGCCGTGTGGTACTTGTTCAGGAGACGGACGCGTGAGGAAGACAAAACGGA 1012
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 954 AGATCTCGACGCCGTGTGGTACTTGCTCTGGAGACGGACGCGTGAGGAAGACAAAACGGA 1013
Query 1013 TAAGTCTCAAAGTACCAGCTGGGGTTGATTCAGGTAGCCGGTTAAGAGTAAGAGGAGAAG 1072
||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1014 TAAGTCTCAAAGTACCAGCCGGGGTTGATTCAGGTAGCCGGTTGAGAGTGAGAGGAGAAG 1073
Query 1073 GCAATGCAGGGAAGAGAGGCGGATCACCAGGCGATCTGTTTGTTGTTATAGAAGTTATAC 1132
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1074 GCAATGCCGGGAAGAGAGGCGGATCACCAGGCGATCTGTTTGTTGTTATAGAAGTTATCC 1133
Query 1133 CAGACCCGGTTTTGAAACGGGACGATACAAATATTCTCTACACTTGCAAGATATCGTATA 1192
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CAGACCCGATTTTGAAACGAGACGATACAAATATTCTCTACACTTGCAAGATATCGTATA 1193
Query 1193 TTGATGCGATTTTAGGGACAACATTGAAAGTGCCAACAGTGGATGGGACAGTAGATTTGA 1252
| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1194 TCGATGCGATTTTAGGGACGACACTGAAAGTACCAACAGTGGATGGGACAGTAGATTTGA 1253
Query 1253 AAGTGCCAGCAGGGACACAACCTGGCACGACGCTTGTGATGGCGAAAAAGGGAGTTCCGG 1312
|||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1254 AAGTTCCAGCTGGGACACAACCTAGCACGACGCTTGTGATGGCGAAAAAAGGAGTTCCGG 1313
Query 1313 TATTGAACAAGAGTAATATGAGAGGGGATCAGTTGGTGAGAGTACAAGTGGAGATACCTA 1372
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1314 TATTGAACAAGAGTAATATGAGAGGAGATCAGTTGGTGAGAGTACAAGTGGAGATACCTA 1373
Query 1373 AGAGATTGAGCAAAGAGGAGAAGAAACTTATTGAAGAGCTTGCTGATATGAGCAAGAACA 1432
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1374 AGAGATTGAGCAAAGAGGAGAAAAAACTTATTGAAGAGCTTGCTGATATGAGCAAGAACA 1433
Query 1433 AGACTGCTAATAGCACCAGTAGATGATTAGAAACATGAAAATTTTGACATTGAAAATGTG 1492
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct 1434 AGACTGCTAATAGCACCAGTAGATGATTAGAAACACGAAAATTTTGACATTGAAATTATG 1493
Query 1493 AATCTAT--ATACACATACATTTTTCTACCCTGGCTTGTGATATTTAGAATGGCTCTTGA 1550
||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1494 AATCTCTCTATACATATACATTTTTCTACTCTGGCTTGTGATATTTAGAATGGCTCTTGA 1553
Query 1551 AAAAAGAAGAAGCAAGTGGAGGAAGATGATTGTTGTTGTGG 1591
||||||||||||||||||||||||||||||| |||||||||
Sbjct 1554 AAAAAGAAGAAGCAAGTGGAGGAAGATGATTATTGTTGTGG 1594
> AT4G39960.1 | Symbols: | Molecular chaperone Hsp40/DnaJ family
protein | chr4:18533755-18536618 FORWARD LENGTH=1716
Length=1716
Score = 1240 bits (671), Expect = 0.0
Identities = 1133/1354 (84%), Gaps = 40/1354 (3%)
Strand=Plus/Plus
Query 117 AATGGCTCTAATACAATTTGGAAGTACATGTGTTGCTCAAT---GGAGTATTCGTCCTCA 173
||||||||| ||||||||||||||| ||||||||||||||| ||| | |||||||||
Sbjct 74 AATGGCTCTTATACAATTTGGAAGTTCATGTGTTGCTCAATGGGGGATTCTTCGTCCTCG 133
Query 174 ATTTGCTGTGAGAGCTTATTATCCCAGCAGACTCGAATCAAGTCGCCAACAAAATCCCAT 233
|||||||| | ||||| |||||| |||||| | || || || |||| | ||| |||
Sbjct 134 GTTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTC---TCACCAAGACAATTGCAT 190
Query 234 GAGCCAAATAAATTGTTTGGGAGCTTCAAGGTCGAGTATGTTCT-CACATGGG-TCCTTG 291
||||||||||||||| ||||||||||||||||||||||||| | |||| ||| || ||
Sbjct 191 CAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTT-TGCACA-GGGCTCTTTA 248
Query 292 CCCTTCTTGTCCA-TGACGGGAATGTCTAGAAATATGCATCCTCGCAGAGGATCTCGCTT 350
|||||||||| || |||||||| | ||| |||| ||| |||| |||||| |||||||
Sbjct 249 CCCTTCTTGT-CATTGACGGGAGTATCTCCTAATACACATTCTCGTAGAGGAGCTCGCTT 307
Query 351 CACTGTTAGAGCTGATGCAGATTACTATTCGGTACTCGGAGTTTCGAAAAATGCAACCAA 410
|||||||||||||||| | |||| |||||| || || ||||| |||||||||||||||||
Sbjct 308 CACTGTTAGAGCTGATACTGATTTCTATTCTGTCCTTGGAGTCTCGAAAAATGCAACCAA 367
Query 411 ATCTGAGATTAAAAGCGCTTATCGGAAGCTGGCTAGGAATTACCATCCAGATGTGAACAA 470
| |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 368 AGCTGAGATTAAAAGCGCTTATCGGAAGCTCGCTAGGAGTTATCATCCAGATGTGAACAA 427
Query 471 GGATCCTGGTGCAGAAGAGAAATTCAAAGAAATAAGTAATGCATACGAGGTTTTATCAGA 530
|||| |||| |||||||| ||||| |||||||||||||||||||| ||| | ||||||||
Sbjct 428 GGATGCTGGGGCAGAAGATAAATTTAAAGAAATAAGTAATGCATATGAGATCTTATCAGA 487
Query 531 TGATGAAAAGAA-ATCTCTTTACGATAGGTATGGTGAGGCCGGACTAAAAGGCGCTGCTG 589
|||||| || || |||||| ||||| || ||||| ||||| ||| | |||||||||| |
Sbjct 488 TGATGAGAA-AAGATCTCTATACGACAGATATGGCGAGGCAGGAGTTAAAGGCGCTG--G 544
Query 590 GAATGGGTGGCATGGGGGATTTTAGTAATCCGTTCGATCTATTCGAGTCATTATTCGAAG 649
|||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||
Sbjct 545 -AATGGGAGGCATGGGGGATTATAGTAATCCGTTTGATCTATTTGAGTCATTATTCGAAG 603
Query 650 GCATGGGTGGGATGGGAGGA--GG----TGGAACGGGTAG-AG-G-TTCAAGAAGCAGAG 700
| |||||||||||||||||| || ||||| |||||| || | |||||| |||||||
Sbjct 604 GAATGGGTGGGATGGGAGGAATGGGCGGTGGAATGGGTAGTAGAGGTTCAAGGAGCAGAG 663
Query 701 CCGTGGATGGTCAAGACGAGTATTACACACTAATCTTAAACTTCAAAGAAGCGGTTTTCG 760
| | |||||| |||| ||||||||| |||||||||| || |||||||||||||||||||
Sbjct 664 CTATCGATGGTGAAGATGAGTATTACTCACTAATCTTGAATTTCAAAGAAGCGGTTTTCG 723
Query 761 GGATGGAAAAAGAAATAGAGATATCACGGCTCGAGAGCTGCGGGACTTGTGAA-GGTTCA 819
| || || |||||||| |||||||| ||| | |||||||| |||||||| || |||||
Sbjct 724 GTATTGAGAAAGAAATTGAGATATCTCGGTTAGAGAGCTGTGGGACTTGC-AATGGTTCT 782
Query 820 GGTGCAAAACCGGGAACCAAACCGACCAAATGCACCACGTGTGGCGGACAAGGTCAAGTG 879
|| || ||| ||||||||||||| |||||||||| || |||||||| ||||| || |||
Sbjct 783 GGAGCTAAAGCGGGAACCAAACCAACCAAATGCAAAACATGTGGCGGGCAAGGACAGGTG 842
Query 880 GTTTCATCAGCAAGAACTCCTCTCGGCGTGTTCCAACAAGTCATGACTTGCTCATCC-TG 938
|| ||||| | || || || ||||| || ||||||||||| ||||||||||| ||| ||
Sbjct 843 GTAGCATCAACGAGGACACCACTCGGTGTATTCCAACAAGTGATGACTTGCTC-TCCGTG 901
Query 939 TAACGGCACTGGAGAGATCTCGACGCCGTGTGGTACTTGTTCAGGAGACGGACGCGTGAG 998
|||||| ||||| ||||| || | ||||||||| | || |||||||| ||||| |||||
Sbjct 902 TAACGGAACTGGGGAGATATCAAAACCGTGTGGTGCATGCTCAGGAGATGGACGTGTGAG 961
Query 999 GAAG-ACAAAACGGATAAGTCTCAAAGTACCAGCTGGG-GTTGATTCAGGTAGCCGGTTA 1056
||| ||||| ||||| ||||| ||||| || || ||| || ||||| || || |||||
Sbjct 962 -AAGGACAAAGCGGATTAGTCTTAAAGTTCCTGC-GGGTGTGGATTCTGGAAGTAGGTTA 1019
Query 1057 AGAGTAAGAGGAGAAGGCAATGCAGGGAAGAGAGGCGGATCACCAGGCGATCTGTTTGTT 1116
||||| || |||||||| |||||||| |||||||| |||||||| || ||||| ||||
Sbjct 1020 AGAGTGAGGGGAGAAGGGAATGCAGGAAAGAGAGGTGGATCACCGGGAGATCTCTTTGCG 1079
Query 1117 GTTATAGAAGTTATACCAGACCCGGTTTTGAAACGGGACGATACAAATATTCTCTACACT 1176
||||| || ||||| ||||| ||||||||||| || || ||||||||||| || || ||
Sbjct 1080 GTTATTGAGGTTATTCCAGATCCGGTTTTGAAGCGTGATGATACAAATATACTTTATACG 1139
Query 1177 TGCAAGATATCGTATATTGATGCGATTTTAGGGACAACATTGAAAGTGCCAACAGTGGAT 1236
|| |||||||||||| | ||||| || || ||||| || ||||| || ||||||||||||
Sbjct 1140 TGTAAGATATCGTATGTAGATGCCATATTGGGGACGACTTTGAAGGTACCAACAGTGGAT 1199
Query 1237 GGGACAG-TAGATTTGAAAGTGCCAGCAGGGACACAACCTGGCACGACGCTTG-TGATGG 1294
|| | || | ||||||||||| || |||||||||||||| ||||||| ||| ||||||
Sbjct 1200 GG-AGAGGTGGATTTGAAAGTACCGGCAGGGACACAACCAAGCACGACA-TTGGTGATGG 1257
Query 1295 CGAAAAAGGGAGTTCCGGTATTGAACAAGAGTAATATGAGAGGGGATCAGTTGGTGAGAG 1354
| ||||| ||||||||||| ||||| ||||| || |||||||| |||||||| |||||||
Sbjct 1258 CTAAAAAAGGAGTTCCGGTTTTGAATAAGAGCAAGATGAGAGGTGATCAGTTAGTGAGAG 1317
Query 1355 TACAAGTGGAGATACCTAAGAGATTGAGCAAAGAGGAGAAGAAACTTATTGAAGAGCTTG 1414
| ||||| ||||| |||||||||||||| ||||| ||||||| ||| |||| ||||| |
Sbjct 1318 TGCAAGTTGAGATTCCTAAGAGATTGAGTAAAGAAGAGAAGATGCTTGTTGAGGAGCTGG 1377
Query 1415 CTGATATGAGCAAGAACAAGACT-GCTAATAGCA 1447
|||||||||||||||||||| | ||||||||||
Sbjct 1378 CTGATATGAGCAAGAACAAGG-TAGCTAATAGCA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78563852925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5