BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481103
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22420.1 | Symbols: | Peroxidase superfamily protein | chr2... 1808 0.0
> AT2G22420.1 | Symbols: | Peroxidase superfamily protein | chr2:9513219-9514535
FORWARD LENGTH=1163
Length=1163
Score = 1808 bits (979), Expect = 0.0
Identities = 1066/1107 (96%), Gaps = 9/1107 (1%)
Strand=Plus/Plus
Query 1 GCCTTTAGTATCATTCTCGAAAACCACCAAAAACCTCTTTATTAA-CCAACAAACAAAGT 59
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 14 GCCTTTAGTATCATTCTCGAAAACCACCAAAAACCTCTTTA-TAACCCAACAAACAAAGT 72
Query 60 CTCTTCTTCTTCTTCAATCACTGAAACACAACACCaaaaaagaaaagaaaaaaGTATGTC 119
|||| |||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 73 CTCTACTTCTTCTTCAATCACTGAAACACAACACC----AA-AAAAGAAAAAAGTATGTC 127
Query 120 TCTTCTTCCCCATCTCATCCTCTACCTAACACTCTTCACGGTGGCTGTTACCGGAGAAAC 179
||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||||
Sbjct 128 TCTTCTTCCCCATCTCATCCTCTACCTAACACTTTTGACGGTGGTTGTTACTGGAGAAAC 187
Query 180 TCTCCGGCCAAGATTCTACAGAGAAACATGCCCTGAAGCTGAATCCATAGTAAGAAAAGA 239
|||||| |||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 188 TCTCCGACCAAGATTCTACAGCGAGACATGCCCTGAAGCTGAATCCATAGTAAGAAGAGA 247
Query 240 AATGAAGAAAGCAATGATCAAAGAAGCAAGAAGCGTCGCTTCCGTCATGCGTTTCCAATT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 AATGAAGAAAGCAATGATCAAAGAAGCAAGAAGCGTCGCTTCCGTCATGCGTTTCCAATT 307
Query 300 TCACGACTGTTTCGTCAATGGATGTGACGCATCTCTGTTGCTTGACGACACACCAAACAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TCACGACTGTTTCGTCAATGGATGTGACGCATCTCTGTTGCTTGACGACACACCAAACAT 367
Query 360 GCTTGGTGAGAAACTATCACTTTCCAACATCGATTCTTTAAGATCTTTCGAAGTCGTTGA 419
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 368 GCTTGGTGAAAAACTATCACTTTCCAACATCGATTCACTAAGATCTTTCGAAGTCGTTGA 427
Query 420 CGACATCAAAGAAGCTTTAGAGAAAGCTTGTCCTGCTACTGTTTCTTGTGCCGATATCGT 479
|||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 428 CGACATTAAAGAAGCTCTAGAGAAAGCTTGTCCAGCTACTGTTTCTTGTGCCGATATCGT 487
Query 480 TATCATGGCCGCTCGTGACGCCGTTGCTCTTACAGGAGGACCAGATTGGGAAGTGAAGCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TATCATGGCCGCTCGTGACGCCGTTGCTCTTACAGGAGGACCAGATTGGGAAGTGAAGCT 547
Query 540 AGGAAGGAGAGACAGTTTAACAGCGAGTCAAAAAGATTCCGACGATGTAATGCCAAGTCC 599
||| |||| ||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 548 AGGGAGGAAAGACAGTTTAACAGCGAGTCAGCAAGATTCCGACGATATAATGCCAAGTCC 607
Query 600 AAGAGCCAACGCAACTTTCTTGATTGATCTCTTCGAAAGATTCAATCTTTCTGTGAAAGA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 608 AAGAGCCAACGCAACTTTCTTGATTGATCTCTTCGAAAGATTCAATCTTTCTGTAAAAGA 667
Query 660 CATGGTGGCTTTATCAGGGTCACACTCAATTGGTCAAGGTCGGTGTTTTTCAATCATGTT 719
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 668 CATGGTTGCTTTATCAGGGTCACACTCAATAGGTCAAGGTCGGTGTTTTTCAATCATGTT 727
Query 720 TAGGCTTTATAACCAATCCGGTTCTGGTAAACCGGATCCAGCTCTCGAACCGAGTTACCG 779
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 728 CAGACTTTATAACCAATCCGGTTCTGGTAAACCGGATCCAGCTCTTGAACCGAGTTACCG 787
Query 780 TAAGAAGCTTGATAAGCTTTGTCCTTTGGGTGGAGATGAGAATGTGACTGGAGATCTAGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TAAGAAGCTTGATAAGCTTTGTCCTTTGGGTGGAGATGAGAATGTGACTGGAGATCTAGA 847
Query 840 TGCAACACCTCAGGTTTTTGATAATCAGTACTTT-AAAGACTTGGTTTCAGGGAGAGGGT 898
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 848 TGCAACACCTCAGGTTTTTGATAATCAGTA-TTTCAAAGACTTGGTTTCAGGGAGAGGGT 906
Query 899 TTCTTAACTCTGATCAGACTTTGTACACGAATCGAGTGACGAGAGAGTATGTGAAGATGT 958
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 907 TTCTTAACTCTGATCAGACTTTGTACACGAATCTAGTGACGAGAGAGTATGTGAAGATGT 966
Query 959 TTAGTGAGGATCAAGATGAGTTCTTTAGGGCTTTTGAAGAAGGGATGGTGAAGTTGGGTG 1018
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 967 TTAGTGAGGATCAAGATGAGTTCTTTAGGGCTTTTGCAGAAGGCATGGTGAAGTTGGGTG 1026
Query 1019 ATTTGCAATCTGGAAGACCTGGTGAGATTAGGTTTAATTGTAGGGTTGTTAATAGAAGGC 1078
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1027 ATTTGCAATCTGGGAGACCTGGTGAGATTAGGTTTAATTGTAGAGTTGTTAATAGAAGGC 1086
Query 1079 CTATTGATGTATTGCTTGAATCTTGAA 1105
|||||||||||||||||| ||||||||
Sbjct 1087 CTATTGATGTATTGCTTGTATCTTGAA 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5