BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481105 Length=1437 Score E Sequences producing significant alignments: (Bits) Value AT2G22430.1 | Symbols: ATHB6, HB6 | homeobox protein 6 | chr2:9... 1820 0.0 AT4G40060.1 | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein... 326 5e-88 > AT2G22430.1 | Symbols: ATHB6, HB6 | homeobox protein 6 | chr2:9526095-9527830 REVERSE LENGTH=1529 Length=1529 Score = 1820 bits (985), Expect = 0.0 Identities = 1221/1326 (92%), Gaps = 51/1326 (4%) Strand=Plus/Plus Query 147 AGTAATTAAAGATTGTTGATAATGAAGAGATTAAGTAGTTCAGATTCAGTGGGTGGTCTC 206 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 201 AGTAATTAAAGATTGTTGATGATGAAGAGATTAAGTAGTTCAGATTCAGTGGGTGGTCTC 260 Query 207 AGCTCTTTATGTCCTACAACTTCCACAGATGAGCAGAGTCCGAGAAGATACGGTGGGAGA 266 | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 261 ATCTCTTTATGTCCTACAACTTCCACAGATGAGCAGAGTCCGAGGAGATACGGTGGGAGA 320 Query 267 GAGTTTCAGTCGATGCTTGAAGGTTACGAGGAAGAAGAAGAAGCTATAGTTGAAGAAAGA 326 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 321 GAGTTTCAGTCGATGCTTGAAGGATACGAGGAAGAAGAAGAAGCTATAGTAGAAGAAAGA 380 Query 327 GGACACGTGGGTTTGTCGGAGAAGAAGAGAAGGTTAAGCATTAACCAAGTTAAAGCTTTG 386 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 GGACACGTGGGCTTGTCGGAGAAGAAGAGAAGGTTAAGCATTAACCAAGTTAAAGCTTTG 440 Query 387 GAGAAGAATTTTGAGTTAGAGAATAAGCTTGAGCCTGAGAGGAAAGTTAAGTTAGCTCAA 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 441 GAGAAGAATTTTGAGTTAGAGAATAAGCTTGAGCCTGAGAGGAAAGTTAAGTTAGCTCAA 500 Query 447 GAACTTGGTCTTCAGCCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTGG 506 |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct 501 GAACTTGGTCTTCAACCTCGTCAAGTTGCTGTTTGGTTTCAAAACCGTCGTGCTCGGTGG 560 Query 507 AAGACAAAACAGCTTGAGAAAGATTACGGTGTTCTTAAAACCCAGTATGATTCTCTCCGT 566 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 561 AAGACAAAACAGCTTGAGAAAGATTACGGTGTTCTTAAAACCCAGTACGATTCTCTCCGT 620 Query 567 CACAACTTTGATTCCCTCCGCCGTGACAATGAATCTCTCCTTCAAGAGATTAGTAAACTG 626 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 621 CATAACTTTGATTCCCTCCGCCGTGACAATGAATCTCTCCTTCAAGAGATTAGTAAACTG 680 Query 627 AAAACTAAGCTTAACGGAGGAGGag-a-a-gaagaagaaga-ga-a-CAACGCGGCGGCG 680 ||||| |||||||| |||||||||| | | ||||||||||| || | ||||||||||| | Sbjct 681 AAAACGAAGCTTAATGGAGGAGGAGGAGAAGAAGAAGAAGAAGAGAACAACGCGGCGGTG 740 Query 681 ACAACAACGGAGAGTGATATTTCGGTCAAGGAGGAAGAAGTTTCGTTGCCAGAGAAGATC 740 ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 741 ACAAC---GGAGAGTGATATTTCGGTCAAGGAGGAAGAAGTTTCGTTGCCGGAGAAGATT 797 Query 741 ACAGAACCACCGTCGTCTCCTCCACAGTTTCTTGAACATTCCGATGGTCTTAATTACCGG 800 ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 798 ACAGAGGCACCGTCGTCTCCTCCACAGTTTCTTGAACATTCTGATGGTCTTAATTACCGG 857 Query 801 AGTTTCACTGATCTACGTGACCTTCTTCCATTAAAAGCGGCGGCTTCTTCTTTCGCCGCC 860 |||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||| Sbjct 858 AGTTTCACAGATCTACGTGATCTTCTTCCATTAAAGGCGGCGGCTTCTTCATTCGCCGCC 917 Query 861 GCAGCTGGATCTTCAGACAGTAGCGATTCAAGCGCTCTTCTGAACGAGGAAAGCAGCTCT 920 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| Sbjct 918 GCAGCTGGATCTTCAGACAGTAGCGATTCAAGCGCTCTGCTGAATGAAGAAAGCAGCTCT 977 Query 921 AACGTCACTGTGGCGGCTCCGGTGACGGTCCCCGGCGGCAATTTCTTCCAGTTTGTGAAA 980 || |||||||||||||||||||||||||| || || || ||||||||||||||||||||| Sbjct 978 AATGTCACTGTGGCGGCTCCGGTGACGGTTCCAGGAGGTAATTTCTTCCAGTTTGTGAAA 1037 Query 981 ATGGAGCAGACGGAGGATCACGAGGACTTTTTGAGTGGAGAAGAAGCTTGTGAATTCTTT 1040 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1038 ATGGAGCAGACGGAGGATCATGAGGACTTTCTGAGTGGAGAAGAAGCTTGTGAATTCTTT 1097 Query 1041 TCCGATAAACAACCGCCGTCTCTACACTGGTACTCCACCGTCGATCACTGGACTTGAAGC 1100 |||||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||| Sbjct 1098 TCCGATGAACAACCGCCGTCTCTACACTGGTACTCCACCGTTGATCATTGGAATTGAAGC 1157 Query 1101 TGTAAACACCACTGGAAGAGATTTTGGATT--AT-ATGCTCTCTTCTTCTCTGCTTCTCT 1157 || ||||||||| ||||||||||||||||| || | | | || ||| | | ||||||| Sbjct 1158 TGAAAACACCACCGGAAGAGATTTTGGATTGGATTA-GATG-CT-CTT-T-T-CTTCTCT 1211 Query 1158 GTGGAAAAAACAGAGGAGGGCACAATGGGAATAATGGTTAAAATTGAAGGGTGAAAGGGA 1217 |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| Sbjct 1212 GTGGAAAAAACAGAGGAGGGCAAAATGGGAATAAAG-TTAAAATTGAAGGGTGAAAGGGC 1270 Query 1218 AAAATTAAGGAAGGGTTAAATCTGGGCGGGAATAATGATTTTAGGGTGAATTTGTAATTA 1277 || ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 1271 AA--TTAAGGAAGGGTTAAGTCTGGGCGGGAATAATGATTT-AGGGTGAATTTGTAATTA 1327 Query 1278 TGCTTTT-CTCTGGTGGTTT-CGTGCACTTCTTGTAATTAAG-ATCA--A-A-----GAG 1326 ||||||| |||| ||| ||| ||||||||||||||||||||| |||| | | ||| Sbjct 1328 TGCTTTTTCTCTAGTGATTTTCGTGCACTTCTTGTAATTAAGGATCATCAGATCAAAGAG 1387 Query 1327 AAATTGAGAAGGG---aa-a----aaa---a----TTCAGCATGGACTCTTTAAATTACA 1371 ||||||||||||| || | ||| | |||||||||| |||||||||||||| Sbjct 1388 AAATTGAGAAGGGGTTAACATGTCAAAGGCAAAAATTCAGCATGGGCTCTTTAAATTACA 1447 Query 1372 ATAGTCGACCCTTAAAAACTAAATTATACCACTTTTAACCCTTAAATAAATTTTTGAATC 1431 || | ||||||| ||| |||||||||||||||| | |||||||||| |||||||||||| Sbjct 1448 AT--T-GACCCTTGAAACCTAAATTATACCACTTCTGACCCTTAAATCAATTTTTGAATC 1504 Query 1432 ATAAAA 1437 |||||| Sbjct 1505 ATAAAA 1510 > AT4G40060.1 | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein 16 | chr4:18571359-18573084 REVERSE LENGTH=1518 Length=1518 Score = 326 bits (176), Expect = 5e-88 Identities = 272/318 (86%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 330 CACGTGGGTTTGTCGGAGAAGAAGAGAAGGTTAAGCA-TTAACCAAGTTAAAGCT-TTGG 387 ||| ||||| | ||||||||||||||||| |||| | || ||||||| |||||| || | Sbjct 467 CACATGGGTCTATCGGAGAAGAAGAGAAGATTAA-AAGTTGACCAAGTCAAAGCTCTT-G 524 Query 388 AGAAGAATTTTG-AGTTAGAGAATAAGCTTGAGCCTGAGAGGAAAGTTAAGTTAGCTCAA 446 |||||||||| | | || |||||||| || || |||||||||||| ||| ||||| ||| Sbjct 525 AGAAGAATTTCGAACTT-GAGAATAAACTCGAACCTGAGAGGAAAACTAAATTAGCACAA 583 Query 447 GAACTTGGTCTTCAGCCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTGG 506 || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 584 GAGCTTGGACTTCAACCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTGG 643 Query 507 AAGACAAAACAGCTTGAGAAAGATTACGGTGTTCTTAAAACCCAGTATGATTCTCTCCGT 566 || |||||||||||||| |||||||||||||||||||| || || ||||||||||| Sbjct 644 AAAACAAAACAGCTTGAAAAAGATTACGGTGTTCTTAAGGGTCAATACGATTCTCTCCGC 703 Query 567 CACAACTTT-GATTCCCTCCGCCGTGACAATGAATCTCTCCTTCAAGAGATTAGTAAACT 625 ||||| ||| ||||| ||||||||||||||||| || || || ||||||||||||||| | Sbjct 704 CACAA-TTTCGATTCTCTCCGCCGTGACAATGATTCCCTTCTCCAAGAGATTAGTAAAAT 762 Query 626 GAAAACTAAGCTTAACGG 643 ||| ||||| | ||||| Sbjct 763 CAAAGCTAAGGTAAACGG 780 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70832968995 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5