BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481114
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22540.1 | Symbols: SVP, AGL22 | K-box region and MADS-box t... 1325 0.0
> AT2G22540.1 | Symbols: SVP, AGL22 | K-box region and MADS-box
transcription factor family protein | chr2:9579874-9583893
FORWARD LENGTH=1556
Length=1556
Score = 1325 bits (717), Expect = 0.0
Identities = 793/829 (96%), Gaps = 8/829 (1%)
Strand=Plus/Plus
Query 370 AAACCTAAGCTCTCT-TCTTGCTTCTAGGG-GTTTTTCTT-GTTGTGATGGCGAGAGAAA 426
||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||
Sbjct 497 AAACCTAAGCTCTCTCTCTTGCTTCTAGGGTTTTTTTGTTCGTTGTGATGGCGAGAGAAA 556
Query 427 AGATTCAGATCAGAAAGATCGACAACGCGACGGCGAGACAAGTGACGTTTTCGAAACGAA 486
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 557 AGATTCAGATCAGGAAGATCGACAACGCAACGGCGAGACAAGTGACGTTTTCGAAACGAA 616
Query 487 GAAGAGGGCTTTTCAAGAAAGCTGAAGAGCTCTCCGTTCTCTGCGACGCCGATGTTGCTC 546
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 617 GAAGAGGGCTTTTCAAGAAAGCTGAAGAACTCTCCGTTCTCTGCGACGCCGATGTCGCTC 676
Query 547 TCATCATCTTCTCTTCCACCGGAAAACTCTTCGAGTTCTGTAGCTCCAGCATGAAGGAAG 606
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 677 TCATCATCTTCTCTTCCACCGGAAAACTGTTCGAGTTCTGTAGCTCCAGCATGAAGGAAG 736
Query 607 TCCTAGAGAGGCATAACTTGCAGTCAAAGAATTTGGAGAAGCTTGATCAGCCATCTCTTG 666
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 737 TCCTAGAGAGGCATAACTTGCAGTCAAAGAACTTGGAGAAGCTTGATCAGCCATCTCTTG 796
Query 667 AGTTACAGCTGGTTGAGAACAGTGATCACGCCCGAATGAGTAAAGAAATTGCGGACAAGA 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 AGTTACAGCTGGTTGAGAACAGTGATCACGCCCGAATGAGTAAAGAAATTGCGGACAAGA 856
Query 727 GCCACCGACTAAGGCAAATGAGAGGAGAGGAACTTCAAGGACTTGACATTGAAGAGCTGC 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 857 GCCACCGACTAAGGCAAATGAGAGGAGAGGAACTTCAAGGACTTGACATTGAAGAGCTTC 916
Query 787 AACGGCTAGAGAAGGCCCTTGAAACTGGTTTGACGCGTGTGATTGAAACAAAGAGTGGCA 846
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 917 AGCAGCTAGAGAAGGCCCTTGAAACTGGTTTGACGCGTGTGATTGAAACAAAGAGTGACA 976
Query 847 AGATTATGAATGAGATCAGCGAACTTCAGAGAAAGGGAATGCAATTGATGGATGAGAACA 906
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 977 AGATTATGAGTGAGATCAGCGAACTTCAGAAAAAGGGAATGCAATTGATGGATGAGAACA 1036
Query 907 AGCGGTTGAGGCAGCAAGGAACGCAACTATCGGAAGAGAACGAGCGACTTGGCATGCAAA 966
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1037 AGCGGTTGAGGCAGCAAGGAACGCAACTAACGGAAGAGAACGAGCGACTTGGCATGCAAA 1096
Query 967 TATGGAATAATGTGCATGAATACGGTGGTACCGCTGAATCTGAGAACGCCGCTGTGTACG 1026
|||| || |||||||||| | |||||||| |||||||| |||||||| ||||||||||
Sbjct 1097 TATGTAACAATGTGCATGCACACGGTGGT---GCTGAATCGGAGAACGCTGCTGTGTACG 1153
Query 1027 AGGAAGGACACTCGTCGGAGTCTATTACTAACGCTGGAAACTCCACCGGAGCACCTGTTG 1086
|||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 1154 AGGAAGGACAGTCGTCGGAGTCTATTACTAACGCCGGAAACTCTACCGGAGCGCCTGTTG 1213
Query 1087 ACTCCGAGAGCTCCGATACATCCCTTAGGCTCGGCTTACCGTATGGTGGTTAGAGATGGG 1146
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1214 ACTCCGAGAGCTCCGACACTTCCCTTAGGCTCGGCTTACCGTATGGTGGTTAGAGATGGA 1273
Query 1147 ACAATTCAAAGAAGTTGATGGACG-GAGGAGAGTAATGTAAATCTTTTT 1194
|||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1274 ACAATTCAAAGAAGTTGATGGA-GTGAGGAGAGTAATGTAAATCTTTTT 1321
Score = 307 bits (166), Expect = 1e-82
Identities = 201/216 (93%), Gaps = 10/216 (5%)
Strand=Plus/Plus
Query 128 TTCTTTCTTTCAAATCCTTCAAAAACTAGGGTTTTTACTGTCTTCAAACCATATTTATTC 187
|||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 199 TTCTTTCTTTCAAATCTTTCAAAAACTAGGGTTTTTACTGTCTTGAAATCATATTTATTC 258
Query 188 TTCTAAATTTAGCAAAAAGAACACGATTTACTTTCCATTTCAGTCGTCTTGTCActctct 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TTCTAAATTTAGCAAAAAGAACACGATTTACTTTCCATTTCAGTCGTCTTGTCACTCTCT 318
Query 248 ctct-t-ctttaaagtctccctttttagcaaaaaattctctctctcacaaa-ttt-t--c 301
|||| | ||||||||||||||||||||||||||| |||||||||||||||| ||| | |
Sbjct 319 CTCTCTTCTTTAAAGTCTCCCTTTTTAGCAAAAA-TTCTCTCTCTCACAAAATTTATTTC 377
Query 302 ctctgggttcttcttcctcctcatc--tctcattct 335
|||||| ||||||||||||||| || |||| ||||
Sbjct 378 CTCTGGCTTCTTCTTCCTCCTCCTCCATCTC-TTCT 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5