BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481142
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22800.1 | Symbols: HAT9 | Homeobox-leucine zipper protein f... 1779 0.0
AT4G37790.1 | Symbols: HAT22 | Homeobox-leucine zipper protein ... 422 5e-117
> AT2G22800.1 | Symbols: HAT9 | Homeobox-leucine zipper protein
family | chr2:9704706-9706150 REVERSE LENGTH=1170
Length=1170
Score = 1779 bits (963), Expect = 0.0
Identities = 1105/1171 (94%), Gaps = 20/1171 (2%)
Strand=Plus/Plus
Query 1 GGCTTCATCTCCTCCCATTATCTTCTAAACTCATTTCTTTTTCCTCTCGAAATCTCAAAG 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GGCTTCATCTCCTCCCATTATCTTCTAAACTCATTTCCTTTTCCTCTCGAAATCTCAAAG 60
Query 61 ATAGATAAATTTTACATAGGCATAATTTTTTCACTTCGACTCAGATGGGTTTTGATGATT 120
|||||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 61 ATAGATAAATTTTA-A-AGGCATATTTTTTTCATTTCGACTCAGATGGGTTTTGATGATA 118
Query 121 CATGCAACACAGGTCTTGTTCTTGGATTAGGTCTCTCACCAACTCCAAATAATTACAGTA 180
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 119 CATGCAACACAGGTCTTGTTCTTGGATTAGGTCCCTCACCAATTCCAAATAATTACAATA 178
Query 181 GTGCCATCAGACGATCCCCCGGTTGCAAGCTCGAGCCGTCGTTGACTCTAAGCCTCTCCG 240
|| ||||||||| |||| ||| || ||||||||||||||||||||||||| ||||||| |
Sbjct 179 GTACCATCAGACAATCCTCCGTTTACAAGCTCGAGCCGTCGTTGACTCTATGCCTCTCGG 238
Query 241 GCGATCCCTCGGTTACCGTGGTGACCGGAGCTGACCAGCTATGCCGTCAGACGTCATCTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GCGATCCCTCGGTTACCGTGGTGACCGGAGCTGACCAGCTATGCCGTCAGACGTCATCTC 298
Query 301 ACAGCGGAGTCTCTTCTTTCTCAAGCGGGAGGGTGGTGAAAagagagagagacggtagag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 299 ACAGCGGAGTCTCTTCTTTCTCAAGCGGGAGGGTGGTGAAAAGAGAGAGAGACGGTGGCG 358
Query 361 aagagtcgccggaggaggaagagacgacggagagagTTATAAATGATTACAATGAAGATG 420
|||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct 359 AAGAGTCGCCGGAGGAGGAAGAGATGACGGAGAGAGTTATAAGTGATTACCATGAAGATG 418
Query 421 AAGAAGGTATTAGTGCTAGaaaaaaaCTTAGGCTTACGAAAGAACAATCTGCTCTTCTTG 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 AAGAAGGTATTAGTGCTAGAAAAAAACTTAGGCTTACGAAACAACAATCTGCTCTTCTTG 478
Query 481 AGGATAGCTTCAAGCATCATAGCACCCTTAATCCCAAGCAAAAGCAAGTTCTGGCTAGAC 540
|||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 AGGAAAGCTTCAAGGATCATAGCACCCTTAATCCCAAACAAAAGCAAGTTCTGGCTAGAC 538
Query 541 AGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCCAGGACAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCCAGGACAA 598
Query 601 AGCTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAAAAATGTTGTGAAACATTAACAG 660
||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 599 AGCTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAGAAGTGTTGTGAAACATTAGCAG 658
Query 661 ATGAGAACATGAGACTTCAGAAAGAGATTCAAGAACTCAAAACCCTAAAATTGACTCATC 720
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 659 ATGAGAACATAAGACTTCAGAAAGAGATTCAAGAACTCAAAACCCTAAAATTGACTCAGC 718
Query 721 AGCCTTTTTACATGCACATGCCTGCATCGACTCTAACGATGTGTCCTTCTTGTGAGATAA 780
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 719 --CCTTTT-ACATGCACATGCCTGCATCGACTCTAACGAAGTGTCCTTCTTGTGAGAGAA 775
Query 781 TCGGCGCCGGTGGCGG---TAATGGAGGAGG---TGGCGGCAGCGTGGCTACCGCGGTGG 834
|||||| ||| ||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct 776 TCGGCGGCGGCGGCGGGGGTAATGGAGGAGGAGGTGGCGGCAGCGGGGCTACCGCGGTGA 835
Query 835 TTGTGGATGGAAGTACGGCCAAAGGAGCTTTCTCCATCTCCTCAAAGCCTCACTTCTTCA 894
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 836 TTGTAGATGGAAGTACGGCCAAAGGAGCTTTCTCTATCTCCTCAAAGCCTCACTTCTTCA 895
Query 895 ACCCTTTTACTAATCCATCTGCAGCTTGTTGAATAGTAGTAATTCGTTTTTTATTTATTA 954
||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 896 ACCCTTTTACTAACCCATCTGCAGCTTGTTGAATAGTAGTAATTCGTTTAAT-TTTATTA 954
Query 955 CTTAAAATATTAAAttt-ttttt-----GG-TGGCAATTTAACTAGTAGGAAGAACACAA 1007
||||||||||||| ||| ||||| || ||||| |||||||||||||||||||||||
Sbjct 955 CTTAAAATATTAATTTTCTTTTTTTTTTGGGTGGCATTTTAACTAGTAGGAAGAACACAA 1014
Query 1008 AAACTATGTTAGAAAGGGTAAGATGCGTATAGATGGTCTCTTCTACAATTCCCACTTTGT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AAACTATGTTAGAAAGGGTAAGATGCGTATAGATGGTCTCTTCTACAATTCCCACTTTGT 1074
Query 1068 TTTTCAGTGGGATTGTTGATTTGGGAAAAATAATAGTTTGTAATTATTATTTTATTTGTC 1127
||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||
Sbjct 1075 TTTTCAGTGGGATTGCTGGTTTGAGAAAAAGAATAGTTTGTAATTATTATTTTATTTGTA 1134
Query 1128 GAAAAAAGGTAAAATAGTCTTCACTTTAATT 1158
|||||| ||||||||||||||||||||||||
Sbjct 1135 GAAAAA-GGTAAAATAGTCTTCACTTTAATT 1164
> AT4G37790.1 | Symbols: HAT22 | Homeobox-leucine zipper protein
family | chr4:17768042-17769606 FORWARD LENGTH=1370
Length=1370
Score = 422 bits (228), Expect = 5e-117
Identities = 673/874 (77%), Gaps = 85/874 (10%)
Strand=Plus/Plus
Query 101 TCAGATGGGTTTTGATGATTCATGCAACACAGGTCTTGTTCTTGGATTAGGTCTCTCACC 160
||| |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 196 TCAAATGGGTCTTGATGATTCATGCAACACAGGTCTTGTTCTTGGTTTAGGCCTCTCACC 255
Query 161 AACTCCAAATAATTACAGT-AGTGCCATC-AG--A-CGATCC-CC-C----G------GT 203
||| || |||||||||| | | ||||||| || | | ||| || | | ||
Sbjct 256 AACGCCTAATAATTACAATCA-TGCCATCAAGAAATC-TTCCTCCACTGTGGACCATCGT 313
Query 204 TGCA--A-GCTCGAGCCGTCGTTGACTCTAAGCCTCTCCGGCGATCCCT-C--GGT-TA- 255
| || | |||||| |||||||||||||||||||| ||||| || || | | | |
Sbjct 314 TTCATCAGGCTCGATCCGTCGTTGACTCTAAGCCTATCCGGTGAGAGCTACAAGATCAAG 373
Query 256 CCGTGGTGACCGGAG-C--TGACCAGCTATGCCGTCAGACGTCATCTCACAGCGG-AGTC 311
| ||||| |||| | | ||||| | ||||| ||||| || || |||||||| | ||
Sbjct 374 AC-TGGTG-CCGGCGCCGGCGACCAAATTTGCCGGCAGACCTCGTCCCACAGCGGCA-TC 430
Query 312 TCTTCTTTCTCAAGCGGGAGGGT--GGTGA-AAagagagagagacggtagaga-agagtc 367
|| |||||||| ||||| ||||| | || ||||||| | ||| | || |||
Sbjct 431 TCATCTTTCTCGAGCGGAAGGGTAAAGAGAGAAAGAGAAATCTCCGGCGGCGATGGAGAA 490
Query 368 gccggaggaggaagagacgacggagaga---gT-T-AT--A-A---A-TGATTA-CAATG 414
| |||| ||| ||||||||||||||| || | | | | | |||| | | |||
Sbjct 491 G-AAGAGGCGGAGGAGACGACGGAGAGAGTGGTGTGTTCGAGAGTGAGTGATGATC-ATG 548
Query 415 AAGATGAAGAAGGTATTAGTGCTAGaaaaaaaCTTAGGCTTACGAAAGAACAATCTGCTC 474
| |||||||||||| |||||||| | ||||| ||||| || || ||| ||||||||||||
Sbjct 549 ACGATGAAGAAGGTGTTAGTGCTCGTAAAAAGCTTAGACTCACTAAACAACAATCTGCTC 608
Query 475 TTCTTGAGGATAGCTTCAAGCATCATAGCACCCTTAATCCCAAGCAAAAGCAAGTTCTGG 534
|||| || |||| |||||| | ||||||||||||||||||||||||||| |||| ||| |
Sbjct 609 TTCTCGAAGATAACTTCAAACTTCATAGCACCCTTAATCCCAAGCAAAAACAAGCTCTTG 668
Query 535 CTAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCCA 594
| ||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| |
Sbjct 669 CGAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTGTGGTTCCAAAACAGGAGAGCTA 728
Query 595 GGACAAAGCTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAAAAATGTTGTGAAACAT 654
| ||||| || |||||||||||||| ||||||||||||||||| |||||||| || || |
Sbjct 729 GAACAAAACTAAAGCAAACAGAAGTGGATTGTGAGTTTTTGAAGAAATGTTGCGAGACTT 788
Query 655 TAACAGATGAGAACATGA-GACTTCAGAAAGAGATTCAAGAACTCAAAACCCTAAAATTG 713
|||| |||||||| | || | ||||| |||||| ||||||| || || | ||||||||
Sbjct 789 TAACGGATGAGAATA-GAAGGCTTCAAAAAGAGCTTCAAGACCTTAAGGCTTTAAAATTG 847
Query 714 ACTCATCAGCCTTTTTACATGCACATGCCTGCATCGACTCTAACGATGTGTCCTTCTTGT 773
|||| | || ||||||||||||||||| || ||||| | || ||||| |||||||||
Sbjct 848 TCTCA--A-CCGTTTTACATGCACATGCCGGCGGCGACTTTGACTATGTGCCCTTCTTGT 904
Query 774 GAGATAATCGGCGCCGGTGGCGGTAATGGAGGAGGTGGCGGCAGCGTGGCTACCGCGGTG 833
|||| | |||||| ||||| | | ||||||| | || | || | | | | |
Sbjct 905 GAGAGACTCGGCGGTGGTGGTG-TC--GGAGGAGATA-CG--A-CG-G-C----G-G-T- 948
Query 834 GTTGTGGATGGAAGTA-CGGCCAAAGGAGCTTTCTCCATC-TCCTCAAAGCCTCACTTCT 891
| | ||| ||| | |||| |||||||||||||||||| || ||||||||| ||||
Sbjct 949 -T-G---ATG-AAGAAACGGCGAAAGGAGCTTTCTCCATCGTCA-CAAAGCCTCGTTTCT 1001
Query 892 -TCAACCCTTTTACTAATCCATCTGCAGCTTGTT 924
| |||||||| |||||||| |||||||| ||||
Sbjct 1002 AT-AACCCTTTCACTAATCCTTCTGCAGCATGTT 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5