BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481181 Length=498 Score E Sequences producing significant alignments: (Bits) Value AT2G23090.1 | Symbols: | Uncharacterised protein family SERF |... 737 0.0 AT2G23080.1 | Symbols: | Protein kinase superfamily protein | ... 91.6 6e-18 > AT2G23090.1 | Symbols: | Uncharacterised protein family SERF | chr2:9829450-9830410 REVERSE LENGTH=580 Length=580 Score = 737 bits (399), Expect = 0.0 Identities = 469/501 (94%), Gaps = 12/501 (2%) Strand=Plus/Plus Query 1 AAAAATTCCATTTCGCAtttttttCTTCTTCCTCTTCTGCAAAATTAGGGTTTGTGTTCT 60 ||||||||||||||| |||||| |||||||||||||||| |||||||||||||| | | Sbjct 57 AAAAATTCCATTTCGTATTTTTCTCTTCTTCCTCTTCTGAAAAATTAGGGTTTGAG---T 113 Query 61 TCTTCTTCTAATCGATCAGAAAGATGGGTGGAGGAAACGCACAGAAATCAGCGATGGCTC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 114 TCTTCTTCTAATCGATCAGAAAGATGGGTGGAGGAAACGCACAGAAATCAGCCATGGCTC 173 Query 121 GTGCCAAAAACTTGGAGAAGGCAAAAGCTGCAGGAAAAGGTAGCCAATTGGAAGCTAACA 180 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 174 GTGCCAAAAACTTGGAGAAGGCTAAGGCTGCAGGAAAAGGTAGCCAATTGGAAGCTAACA 233 Query 181 AGAAAGCTATGTCGATTCAGTGCAAGGTTTGTATGCAAACATTTATCTGCACAACATCGG 240 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 234 AGAAAGCTATGTCGATTCAGTGCAAGGTTTGTATGCAAACATTCATCTGCACGACATCGG 293 Query 241 AAGTGAAATGCAGGGAGCACGCAGAGGCGAAGCATCCGAAAGCCGATGTTGAT-GCTTGT 299 |||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| Sbjct 294 AAGTGAAATGCAGGGAGCACGCGGAGGCGAAGCATCCGAAAGCCGATGTTG-TCGCTTGT 352 Query 300 TTCCCTCACCTCAAGAAGTGATGAAAACTATCTATTATCTCAACTATAAAGGATTCCAAT 359 |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| Sbjct 353 TTCCCTCACCTCAAGAAGTGATGAAAGCTAT-TAT---CTCAACTATAAAGGATTCCAAT 408 Query 360 GTAAAACGTATGGATCCTCTTCTTTCCTATGTTTGTATCAAAGTCTTGACAGTATTT-AT 418 ||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||| || Sbjct 409 GTATAACGTATGGATCCTCATCTTTCCTATGTTTGTATCAAAGTCTCGACAA-ATTTTAT 467 Query 419 GGTTTCTGCTTCTCTTTACTTTTTTCAACAATAAGTCTCTTGCTATGATTATATAATGAA 478 ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 468 GGTTTCTATTTCTCTCTACTTGTTTCAACAATAAGTCTCTTGCTATGATTATATAATGAA 527 Query 479 GCTTTGTTTGGAAC-TTTTTT 498 ||||||| |||||| |||||| Sbjct 528 GCTTTGTGTGGAACCTTTTTT 548 > AT2G23080.1 | Symbols: | Protein kinase superfamily protein | chr2:9827113-9829537 FORWARD LENGTH=1311 Length=1311 Score = 91.6 bits (49), Expect = 6e-18 Identities = 54/56 (96%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 444 CAACAATAAGTCTCTTGCTATGATTATATAATGAAGCTTTGTTTGGAAC-TTTTTT 498 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 1311 CAACAATAAGTCTCTTGCTATGATTATATAATGAAGCTTTGTGTGGAACCTTTTTT 1256 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23760751531 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5