BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481181

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G23090.1 | Symbols:  | Uncharacterised protein family SERF |...   737    0.0  
  AT2G23080.1 | Symbols:  | Protein kinase superfamily protein | ...  91.6    6e-18


> AT2G23090.1 | Symbols:  | Uncharacterised protein family SERF 
| chr2:9829450-9830410 REVERSE LENGTH=580
Length=580

 Score =  737 bits (399),  Expect = 0.0
 Identities = 469/501 (94%), Gaps = 12/501 (2%)
 Strand=Plus/Plus

Query  1    AAAAATTCCATTTCGCAtttttttCTTCTTCCTCTTCTGCAAAATTAGGGTTTGTGTTCT  60
            ||||||||||||||| |||||| |||||||||||||||| |||||||||||||| |   |
Sbjct  57   AAAAATTCCATTTCGTATTTTTCTCTTCTTCCTCTTCTGAAAAATTAGGGTTTGAG---T  113

Query  61   TCTTCTTCTAATCGATCAGAAAGATGGGTGGAGGAAACGCACAGAAATCAGCGATGGCTC  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  114  TCTTCTTCTAATCGATCAGAAAGATGGGTGGAGGAAACGCACAGAAATCAGCCATGGCTC  173

Query  121  GTGCCAAAAACTTGGAGAAGGCAAAAGCTGCAGGAAAAGGTAGCCAATTGGAAGCTAACA  180
            |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  174  GTGCCAAAAACTTGGAGAAGGCTAAGGCTGCAGGAAAAGGTAGCCAATTGGAAGCTAACA  233

Query  181  AGAAAGCTATGTCGATTCAGTGCAAGGTTTGTATGCAAACATTTATCTGCACAACATCGG  240
            ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct  234  AGAAAGCTATGTCGATTCAGTGCAAGGTTTGTATGCAAACATTCATCTGCACGACATCGG  293

Query  241  AAGTGAAATGCAGGGAGCACGCAGAGGCGAAGCATCCGAAAGCCGATGTTGAT-GCTTGT  299
            |||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct  294  AAGTGAAATGCAGGGAGCACGCGGAGGCGAAGCATCCGAAAGCCGATGTTG-TCGCTTGT  352

Query  300  TTCCCTCACCTCAAGAAGTGATGAAAACTATCTATTATCTCAACTATAAAGGATTCCAAT  359
            |||||||||||||||||||||||||| |||| |||   ||||||||||||||||||||||
Sbjct  353  TTCCCTCACCTCAAGAAGTGATGAAAGCTAT-TAT---CTCAACTATAAAGGATTCCAAT  408

Query  360  GTAAAACGTATGGATCCTCTTCTTTCCTATGTTTGTATCAAAGTCTTGACAGTATTT-AT  418
            ||| ||||||||||||||| |||||||||||||||||||||||||| ||||  |||| ||
Sbjct  409  GTATAACGTATGGATCCTCATCTTTCCTATGTTTGTATCAAAGTCTCGACAA-ATTTTAT  467

Query  419  GGTTTCTGCTTCTCTTTACTTTTTTCAACAATAAGTCTCTTGCTATGATTATATAATGAA  478
            |||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  468  GGTTTCTATTTCTCTCTACTTGTTTCAACAATAAGTCTCTTGCTATGATTATATAATGAA  527

Query  479  GCTTTGTTTGGAAC-TTTTTT  498
            ||||||| |||||| ||||||
Sbjct  528  GCTTTGTGTGGAACCTTTTTT  548


> AT2G23080.1 | Symbols:  | Protein kinase superfamily protein 
| chr2:9827113-9829537 FORWARD LENGTH=1311
Length=1311

 Score = 91.6 bits (49),  Expect = 6e-18
 Identities = 54/56 (96%), Gaps = 1/56 (2%)
 Strand=Plus/Minus

Query  444   CAACAATAAGTCTCTTGCTATGATTATATAATGAAGCTTTGTTTGGAAC-TTTTTT  498
             |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct  1311  CAACAATAAGTCTCTTGCTATGATTATATAATGAAGCTTTGTGTGGAACCTTTTTT  1256



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5