BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481183
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23096.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1173 0.0
> AT2G23096.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr2:9834766-9836235
REVERSE LENGTH=825
Length=825
Score = 1173 bits (635), Expect = 0.0
Identities = 770/832 (93%), Gaps = 22/832 (3%)
Strand=Plus/Plus
Query 1 ATGAGATCATATGGCAAAGAGAAGAAGTTAGGGTTTCCTTACgttttc-ttggcgtgttg 59
||||||||||||||||||||||||||||||| |||||| ||||||||| || ||||||||
Sbjct 1 ATGAGATCATATGGCAAAGAGAAGAAGTTAGTGTTTCCGTACGTTTTCATT-GCGTGTTG 59
Query 60 cttcttcttggccatcttcggtttctgtttcttcaatcttctt-tctCAGATAATAAGTT 118
|||||||||||||||||||||||||||||||||||||||| || |||||| ||| ||||
Sbjct 60 CTTCTTCTTGGCCATCTTCGGTTTCTGTTTCTTCAATCTT-TTCTCTCAGGGAATTAGTT 118
Query 119 TCAGTGAGATTTCGAC-GC--GAAGATCTGTAAACGAAGAAACTGAATCTTTGGATCATG 175
||||||||||| |||| | |||||||||| ||||| |||||||| |||||||||||||
Sbjct 119 TCAGTGAGATTCCGACAACAAGAAGATCTGTTAACGATGAAACTGATTCTTTGGATCATG 178
Query 176 G---TTCTGTCTCTAACATTCCTTTTCATGGTTTAAGCTGGAATCCTCGAGTTTTTTACT 232
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GTTCTTCTGTCTCTAACATTCCTTTTCATGGTTTAAGCTGGAATCCTCGAGTTTTTTACT 238
Query 233 TGCCGAATTTCGCAACTAAACAACAATGTGAAGCCGTTATCGATATGGCAAAGCCTAAGC 292
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGCCGAATTTCGCAACGAAACAACAATGTGAAGCCGTTATCGATATGGCAAAGCCTAAGC 298
Query 293 TTAAGCCTTCT-CTGCTTGCTTTAAGGAAAGGCGAAACCGCAGAAACCACTCAAAACGTT 351
||||||||||| | |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 299 TTAAGCCTTCTAC-GCTTGCTTTAAGGAAAGGTGAAACCGCAGAAACCACTCAAAAC--T 355
Query 352 AGAAC-AAG-GTT-A-AAGAAAACTGATGAAGATGAATCCGGGCTTTTAACTGCCATCGA 407
| | || || | || | || |||||||| ||||||||| ||||| ||||||||||
Sbjct 356 --ACCGGAGTCTTCATCAGCACACCGATGAAGACGAATCCGGGGTTTTAGCTGCCATCGA 413
Query 408 AGAGAAAATAGCTTTAGCCACGAGAATCCCTATAGATTATTACGAATCATTCAACATCTT 467
||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||||||
Sbjct 414 AGAGAAAATAGCTTTAGCCACAAGATTCCCCAAAGATTATTACGAATCATTCAACATCTT 473
Query 468 GAGGTATCAGCTTGGCCAGAAATATGATTCACATCACGATGCTTTCCATCCAGCAGTGTA 527
||||||||||||||||||||| |||||||||||| | |||||||||||| |||||| |||
Sbjct 474 GAGGTATCAGCTTGGCCAGAAGTATGATTCACATTATGATGCTTTCCATTCAGCAGAGTA 533
Query 528 TGGTCCCC-AGATAAGCCAAAGGGTCGTGACTTTCCTATTGTTCTTATCGAGTGTCGAAG 586
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGGTCCCCTA-ATAAGCCAAAGGGTCGTGACTTTCCTATTGTTCTTATCGAGTGTCGAAG 592
Query 587 AAGGTGGAGAGACGATGTTCCCATTCGAGAATGGGAGAAACATGAATGGAAGTTATGATT 646
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 593 AAGGTGGAGAGACGATGTTCCCATTCGAGAATGGGAGAAATATGAATGGAAGATATGATT 652
Query 647 ATGAGAAGTGTATTGGTCTGAGAGTAAAACCGCGACAAGGAGACGCCATTTTCTTCTACA 706
||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 653 ATGAGAAGTGTGTTGGTCTGAAAGTAAAGCCGCGACAAGGAGACGCCATTTTCTTCTACA 712
Query 707 ATTTGCTCCCAAATGGAACGATCGATCAGACATCTCTCCATGGAAGCTGTCCTGTTATCA 766
||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 713 ATTTGTTTCCAAATGGAACGATCGATCAAACATCTCTACATGGAAGCTGTCCTGTTATCA 772
Query 767 AGGGTGAGAAATGGGTTGCCACCAAATGGATAAGAGACCAAACATATGATTG 818
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AGGGTGAGAAATGGGTTGCCACCAAATGGATAAGAGACCAAACATATGATTG 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39835678571
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5