BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481185

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G23120.1 | Symbols:  | Late embryogenesis abundant protein, ...   440    5e-123


> AT2G23120.1 | Symbols:  | Late embryogenesis abundant protein, 
group 6 | chr2:9842043-9842634 FORWARD LENGTH=592
Length=592

 Score =  440 bits (238),  Expect = 5e-123
 Identities = 323/361 (89%), Gaps = 17/361 (5%)
 Strand=Plus/Plus

Query  26   ACGACGGAGAAGAAAACAGAGCAAGTGAAAGACAACGACTTACCAACCAATAGCCCTTAC  85
            ||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||
Sbjct  96   ACGACGGAGAAGAAAACGGAGCAAGTGAAAGACAACGACTTGCCGACCGATAGCCCTTAC  155

Query  86   ATGGCCACAGGTACTTTGGAAGATTACAAACTGAAAGCTTATGGAGCCGAAGGTCACCAA  145
            ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  156  ATGGCGACGGGTACTTTGGAAGATTACAAATTGAAAGCTTATGGAGCCGAAGGTCACCAA  215

Query  146  GAACCTACGCCTGGTCTTGGAGGTGGCTCCACCGATGCTCCTACTCCTTCTGGCGACAAA  205
            || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct  216  GAGCCTACTCCTGGTCTTGGAGGTGGCTCCACCGATGCTCCTACTCCTTCTGGCGACGCA  275

Query  206  CCCGCCGCCACCACCACTGGA-GCCAAAGCTCCGTGAAAAATAA-AA-GACTATAATAAT  262
            ||||||||||| ||||| | | || |||||||||||||||| || || ||||||||||||
Sbjct  276  CCCGCCGCCACTACCACCG-ATGCGAAAGCTCCGTGAAAAAAAAGAAAGACTATAATAAT  334

Query  263  GAACGGGTTTTGTGGATCTTCGGaaaaaaagaaaaaaaCCCAAAATTGTAGTATTGTTCA  322
            |||||||||||||||||| |||||||| || |      |||| ||||||||||| |||||
Sbjct  335  GAACGGGTTTTGTGGATCGTCGGAAAACAA-A------CCCATAATTGTAGTAT-GTTCA  386

Query  323  ATAACTGATCCAGCTTCTTTTTATTTCTTAACGTTTTTATGGTTTGACTAAAAATGTATT  382
            ||||||||||||||||| |||     ||||||||||||||||||| | ||||||||||||
Sbjct  387  ATAACTGATCCAGCTTCGTTT-----CTTAACGTTTTTATGGTTTAATTAAAAATGTATT  441

Query  383  T  383
            |
Sbjct  442  T  442



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19755225357


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5