BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481186
Length=2492
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23140.1 | Symbols: | RING/U-box superfamily protein with A... 4108 0.0
> AT2G23140.1 | Symbols: | RING/U-box superfamily protein with
ARM repeat domain | chr2:9845694-9849164 REVERSE LENGTH=2551
Length=2551
Score = 4108 bits (2224), Expect = 0.0
Identities = 2386/2467 (97%), Gaps = 0/2467 (0%)
Strand=Plus/Plus
Query 26 GAAGTATCTCGTCGTTTCTAAATCTGTCATCTTCCAAACATATAGATTTAGACCCATTTG 85
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 85 GAAGTATCTCGTCGTTTCTAAATCTGTCATCTTCTAAACATATTGATTTAGACCCGTTTG 144
Query 86 AGAAGTACTATAAAAGAGTTGAAGAGTTATTGAAAGTGTTGAAGCCTATTGCAGATGTTG 145
||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 145 AGAAGTACTATAAGAGAGTTGAAGAGTTATTGAGAGTGTTGAAGCCTATAGCAGATGTTG 204
Query 146 TTGTTAACTCTGATCTTGTTTTGGATGACAAACTTGGTAAAGCATTTGAAGAATTGACCC 205
|||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 205 TTGTTACCTCTGATTTTGTTTTTGATGAGAAACTTGGTAAAGCATTTGAAGAATTGACTC 264
Query 206 AGGATGTTGATCAATCGATTGATCTTTTCAGGAGTTGGCAAGCATTCTCCAGTAAAGTTT 265
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 265 AGGATGTTGATCAATCCATTGATCTTTTCAGGAGTTGGCAAGCTTTCTCTAGTAAAGTCT 324
Query 266 ATTTCGTTCTTCAAATTGAATCTTTGATACCAAAGATGCGAGACACCATTGTGGATACTT 325
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 325 ATTTCGTTCTTCAAATTGAATCTTTGCTACCAAAGATGCGGGACACCATTGTGGATACTT 384
Query 326 TCCAGTTTCTCATGTCTTCTAAGAACCATCTACCTGATGAGCTAAGCCCAGCTTCCCTTG 385
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 385 TTCAGTTTCTCATGTCTTCTAAGAACCATCTACCTGATGAGCTAAGCCCAGCTTCTCTTG 444
Query 386 AGCAATGTTTAGAGAAGATTAAGCATCTTAGTTATGAAGAAATATCTTCTGTCATTGATG 445
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 445 AGCAATGTCTAGAGAAGATTAAGCATCTTAGTTATGAAGAAATATCTTCTGTCATTGACG 504
Query 446 GTGCTTTGAGGGATCAGAGAGATGGTGTTGGACCTAGCCCTGAGATCTTGGTGAAAATTG 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 GTGCTTTGAGGGATCAGAGAGATGGTGTTGGACCTAGCCCTGAGATCTTGGTGAAAATTG 564
Query 506 GTGAGAACACTGGTCTGAGATCAAACCAGGAGATTCTGATTGAAGCTGTTGCTCTGGAGA 565
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 565 GAGAGAACACTGGTCTTAGATCAAACCAGGAGATTCTGATTGAAGCTGTTGCTCTAGAGA 624
Query 566 GGCAGAAAGAGATGGCTGAGCAGTCTGAGAATAATGCAGAAGTCGAGTTCCTTGACCAAC 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GGCAGAAAGAGATGGCTGAGCAGTCTGAGAATAATGCAGAAGTCGAGTTCCTTGACCAAC 684
Query 626 TGATTGTTATTGTTAATCGCATGCACGAACGTCTTCTTCTGATCAAACAGACTCAGACAT 685
||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 685 TGATTGTTATTGTAAACCGCATGCATGAACGTCTTCTTCTGATCAAACAGACTCAGACTT 744
Query 686 CTAGTGTCGCCATTCTTGCCGACTTCTTTTGCCCTCTGTCACTTGAAGTAATGACTGATC 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 CTAGTGTCGCCATTCTTGCCGACTTCTTTTGCCCTCTGTCACTTGAAGTAATGACTGATC 804
Query 746 CAGTGATTGTGTCATCAGGACAAACATATGAAAAGGCGTTCATCAAGAGATGGATTGATT 805
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 805 CAGTGATTGTGTCATCAGGACAAACATATGAAAAGGCGTTTATCAAGAGATGGATTGATT 864
Query 806 TGGGTTTAAAAGTGTGTCCCAAGACTCGACAGACCCTGACTCACACGACTCTAATACCCA 865
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 865 TGGGTTTAAAAGTGTGTCCCAAGACTCGACAGACCCTGACTCACACTACTCTAATACCCA 924
Query 866 ATTACACTGTGAAGGCCTTAATCGCTAACTGGTGTGAGACAAACGATGTCAAGCTGCCTG 925
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 ATTACACCGTGAAGGCCTTAATCGCTAACTGGTGTGAGACAAACGATGTCAAGCTGCCTG 984
Query 926 ATCCCAATAAATCAACAAGTTTAAATGAGCTTTCTCCTCTTTTATCATGTACAGACTCCA 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 ATCCCAATAAATCAACAAGTTTAAATGAGCTTTCTCCTCTTTTATCATGTACAGACTCCA 1044
Query 986 TTCCTAGCACGGGTGCTGATGTTTCTGCTCATAAAGTTAGCAACAAGTCACATCATTGGG 1045
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1045 TTCCTAGCACGGGTGCTGATGTTTCTGCTCGTAAAGTTAGCAACAAGTCACATGATTGGG 1104
Query 1046 ATGCTTCTTCAAGTGAAACCGGTAAGCCCTCATTCTCAAGCCGAGCAACTGAAAGAGAAG 1105
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1105 ATGCTTCTTCAAGTGAAACCGGTAAGCCCTCGTTCTCAAGCCGAGCAACTGAAAGAGAAG 1164
Query 1106 GTGCTTCTCCTTCACGTCCTGCTTCTGCCTTGGGCGCTTCTTCACCGGGTGTATCTGGAA 1165
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1165 GTGCTTCTCCTTCACGTCCTGCTTCTGCCTTGGGTGCTTCTTCACCGGGTATATCTGGAA 1224
Query 1166 ATGGGTACGGTTTGGACGCCAGGAGGGGATCACTAAATGATTTTGAAGATAGATCTAACG 1225
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1225 ATGGTTACGGTTTGGACGCCAGGAGGGGATCACTAAATGATTTTGAAGATAGATCAAACG 1284
Query 1226 ATTCTCGAGAAATGAAGACAGATGCACCTGGGAGGTCATCTGTATCTTCAACTACACGAG 1285
||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1285 ATTCTCGAGAACTGAGGACAGATGCACCTGGTAGGTCATCTGTATCTTCAACTACACGAG 1344
Query 1286 GCTCAGTGGAAAATGGACAAACATCTGAGAACCACCATCATAGGTCCCCTTCTGCTACTA 1345
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 GCTCAGTAGAAAATGGACAAACATCTGAGAACCACCATCATAGGTCCCCTTCTGCTACTA 1404
Query 1346 GCACTGTTTCCAATGAAGAGTTTCCTAGAGCAGATGCGAACGAGAATTCAGAAGAATCAG 1405
|||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1405 GCACTGTTTCCAATGAGGAGTTTCCAAGGGCAGATGCGAATGAGAATTCAGAAGAATCAG 1464
Query 1406 CTCATGCTACACCTTACAGCAGTGATGCTTCAGGAGAAATTAGATCAGGGCCTCTTGCTG 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 CTCATGCTACACCTTACAGCAGTGATGCTTCAGGAGAAATTAGATCAGGGCCTCTTGCTG 1524
Query 1466 CAACCACTTCAGCAGCTACTCGGCGAGATTTGTCTGATTTTTCCCCCAAATTCATGGATA 1525
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1525 CAACCACTTCAGCAGCTACTCGCCGAGATTTGTCTGATTTTTCCCCAAAATTCATGGATA 1584
Query 1526 GACGTAGTCGTGGTCAATTTTGGCGACGTCCATCAGAGAGACTCGGTTCAAGGATTGTTT 1585
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 GACGTACCCGTGGTCAATTTTGGCGACGTCCATCAGAGAGACTCGGTTCAAGGATTGTTT 1644
Query 1586 CAGCGCCTTCGAATGAGGCAAGACGTGATCTTTCTGAGGTCGAAACCCAAGTTAAGAAGT 1645
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1645 CAGCGCCTTCGAATGAGACAAGACGTGATCTTTCTGAGGTCGAAACTCAAGTTAAGAAGT 1704
Query 1646 TGGTGGAGGAGTTGAAAAGCAGTTCATTGGATACTCAGAGACAAGCAACCGCAGAACTAA 1705
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1705 TGGTGGAGGAGTTGAAAAGCAGCTCATTGGATACTCAGAGACAAGCAACCGCAGAACTAA 1764
Query 1706 GGTTGCTAGCCAAGCACAACATGGATAATCGGATAGTCATTGGGAACTCTGGAGCAATCG 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 GGTTGCTAGCCAAGCACAACATGGATAATCGGATAGTCATTGGGAACTCTGGAGCAATCG 1824
Query 1766 TCTTATTGGTGGAACTACTTTACTCAAGTGACTCAGCTACACAGGAAAACGCTGTTACCG 1825
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1825 TCTTATTGGTGGAACTACTTTACTCAACTGACTCAGCTACACAGGAAAACGCTGTTACCG 1884
Query 1826 CCCTTCTCAACTTATCTATCAATGACAACAACAAAACTGCAATTGCTGATGCCGGTGCGA 1885
| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1885 CACTTCTCAACTTATCTATCAATGACAACAACAAAAAAGCAATTGCTGATGCTGGTGCAA 1944
Query 1886 TTGAGCCGCTCATTTACGTGCTTGAAAATGGTAGCTCTGAAGCTAAGGAGAATTCAGCTG 1945
|||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1945 TTGAGCCGCTCATTCACGTGCTTGAAAATGGGAGCTCTGAAGCCAAGGAGAATTCAGCTG 2004
Query 1946 CCACTCTCTTCAGTCTCTCTGTAATAGAAGAAAACAAGATTAAGATCGGTCAGTCGGGTG 2005
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2005 CTACTCTCTTCAGCCTCTCTGTAATAGAAGAAAACAAGATTAAGATTGGTCAGTCGGGTG 2064
Query 2006 CAATCGGGCCTCTTGTAGATCTACTCGGTAACGGTACCCCTCGGGGTAAGAAAGACGCAG 2065
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2065 CAATCGGGCCTCTTGTAGATCTTCTCGGTAACGGTACCCCTCGGGGTAAGAAAGACGCTG 2124
Query 2066 CTACTGCATTGTTTAATCTATCGATACATCAAGAAAACAAGGCGACGATCGTGCAATCAG 2125
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2125 CTACTGCCTTGTTTAATCTATCGATACATCAAGAAAACAAGGCGATGATCGTGCAATCAG 2184
Query 2126 GTGCTGTGAGATATCTTATTGATTTGATGGACCCAGCAGCTGGGATGGTGGATAAAGCAG 2185
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2185 GTGCTGTGAGATATCTTATTGATCTGATGGACCCAGCAGCTGGGATGGTGGATAAAGCAG 2244
Query 2186 TTGCTGTTTTGGCAAACCTAGCCACAATCCCAGAAGGAAGAAACGCGATTGGTCAAGAAG 2245
|||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 2245 TTGCTGTTTTGGCAAATCTAGCTACAATTCCGGAAGGAAGAAACGCGATTGGTCAAGAAG 2304
Query 2246 GCGGGATCCCTCTTCTTGTTGAGGTCGTTGAGTTGGGTTCAGCTAGAGGGAAAGAAAACG 2305
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2305 GCGGAATCCCTCTTCTTGTTGAAGTCGTTGAGTTGGGTTCAGCTAGAGGGAAAGAAAACG 2364
Query 2306 CCGCAGCAGCTCTCCTTCAACTTTCAACCAACAGTGGTCGGTTCTGCAACATGGTTCTTC 2365
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2365 CAGCAGCAGCTCTTCTTCAACTTTCAACCAACAGTGGTCGGTTCTGCAACATGGTTCTTC 2424
Query 2366 AAGAAGGCGCCGTTCCTCCACTCGTTGCTCTCTCACAGTCTGGTACTCCCAGAGCTAGAG 2425
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2425 AAGAAGGCGCCGTTCCTCCACTCGTCGCTCTCTCACAGTCTGGTACTCCTAGAGCTAGAG 2484
Query 2426 AAAAGGCACAGGCGTTGCTCAGTTACTTCAGAAACCAACGGCATGGAAACGCCGGGCGTG 2485
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2485 AAAAGGCACAGGCGTTGCTCAGTTACTTCAGAAACCAACGGCATGGAAACGCTGGGCGTG 2544
Query 2486 GCTGATG 2492
|||||||
Sbjct 2545 GCTGATG 2551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123661514495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5