BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481233
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23672.1 | Symbols: | other RNA | chr2:10063245-10064004 FO... 846 0.0
AT2G23670.1 | Symbols: YCF37 | homolog of Synechocystis YCF37 |... 737 0.0
> AT2G23672.1 | Symbols: | other RNA | chr2:10063245-10064004
FORWARD LENGTH=760
Length=760
Score = 846 bits (458), Expect = 0.0
Identities = 630/708 (89%), Gaps = 32/708 (5%)
Strand=Plus/Minus
Query 1 ATTATTCTTTAATTAAAATCTTTTTTGTTACCCATTTTTATCAAAGAATCTCAATGGAGA 60
||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct 743 ATTATTCTTTAATTATAATCTTTTTT-ATACCCA--TTTATCAAAGAATCTCAATGGAGA 687
Query 61 TGACGTGTCACGTCATTTGACAATGAAATTATTTTGTTATCTTGTATATTATCAAATTTT 120
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 686 TGACGTGTCACGTCAATTGACAATGAAATTATTTTGTTATCTTATATATTATCAAAACTT 627
Query 121 TTCGAATTTTCTATTTCACATCT--GA------------------GAG---ATCTAAAAA 157
|||| |||||||||||||||||| || ||| |||||||||
Sbjct 626 TTCGTATTTTCTATTTCACATCTGAGAGCTTTTTTCGTTTCTTGTGAGATCATCTAAAAA 567
Query 158 ATGGCTTCCACTGTTTCGCTTTCTTTACTCAGCGGCGGTGGTGGAGCTCTACAGGCGCGT 217
|||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 566 ATGGCTTCGACTGTTTCGCTTTCTTTACTCAGCGGCGGCAGTGGAGCTCTTCAGGCGCGT 507
Query 218 TGCGCGAGAAATGCGCATGTTAGCCCACGAGCGGCGCATTCTAGCAAACCCGCGCCTCCA 277
||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 506 TGCGCAAGAACCGCGCATGTTAGCCCACGAGCGGCGCATTCTAACAAACCCGCGCTTTCT 447
Query 278 TCTTTCTCACTAACCGGCGCTTCTCGCAGGAATCTCCTCTTTTCCCTGACGGCAGCGACG 337
|| ||||| || |||||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct 446 TCGTTCTCGCTGACCGGCGCCTCTCGCAGGAATCTGTTATTTTCGTTGACGGCAGCGACG 387
Query 338 GTGA-TGACAGGACTTCAGTCTGCATCAATGGCGGAGAATATTCCtttttttGGTATAAG 396
|| | |||| ||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 386 GT-AGTGACGGGACTTCAGCCTGCATCAATGGCGGAGAATATTCCGTTATTTGGTATAAG 328
Query 397 AAAGAAGCTCAA-AAAGGCAGAAGAAGAAGCGGTGGAGATCGTGAAGGAAGGCTTTGAGT 455
|||||| || || ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 327 AAAGAAACTGAAGAAA-GCAGAAGAAGAAGCGGTGGAGATCGTGAAAGAAGGCTTTGAGA 269
Query 456 CGGCGGAGAAAGGTGTTGATGCGGCGGAGAGAGGATTAGAAGCGGCGGAGAGAGGTGTAG 515
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 268 CGGCGGAGAAAGGCGTTGATGCGGCGGAGAAAGGATTAGAAGCGGCGGAGAGAGGTGTAG 209
Query 516 AGTCGGCGGAGAAGGAAATCGTGACGGCAGTTAGTTTTAATGGATTGACACAAGCCGGAG 575
|| |||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 208 AGACGGCAGAGAAGGAAATCGTGACGGCGGTTAGCTTTAATGGATTGACACAAGCTGGAG 149
Query 576 CCGTTGTGGCGGCTGAGTTCGTCGGAGTTCTTGTCGCTACGTCAGTCGTGAATGGGATTT 635
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 148 CCGTCGTGGCGGCTGAGTTCGTCGGAGTTCTTGTCGCTACGTCAGTAGTGAATGGGATTT 89
Query 636 TAGGACCAGAAGCCCAGAAATCTTAGGA-TAAATCTAATGCTATATGT 682
|||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 88 TAGGACCAGAAGCCCAGAAATCTTAGGAATAAC-CTAATGCTATGTGT 42
> AT2G23670.1 | Symbols: YCF37 | homolog of Synechocystis YCF37
| chr2:10063155-10063863 REVERSE LENGTH=709
Length=709
Score = 737 bits (399), Expect = 0.0
Identities = 497/544 (91%), Gaps = 7/544 (1%)
Strand=Plus/Plus
Query 143 TGAGA-GATCTAAAAAATGGCTTCCACTGTTTCGCTTTCTTTACTCAGCGGCGGTGGTGG 201
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 38 TGAGATCATCTAAAAAATGGCTTCGACTGTTTCGCTTTCTTTACTCAGCGGCGGCAGTGG 97
Query 202 AGCTCTACAGGCGCGTTGCGCGAGAAATGCGCATGTTAGCCCACGAGCGGCGCATTCTAG 261
|||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 98 AGCTCTTCAGGCGCGTTGCGCAAGAACCGCGCATGTTAGCCCACGAGCGGCGCATTCTAA 157
Query 262 CAAACCCGCGCCTCCATCTTTCTCACTAACCGGCGCTTCTCGCAGGAATCTCCTCTTTTC 321
||||||||||| | | || ||||| || |||||||| |||||||||||||| | |||||
Sbjct 158 CAAACCCGCGCTTTCTTCGTTCTCGCTGACCGGCGCCTCTCGCAGGAATCTGTTATTTTC 217
Query 322 CCTGACGGCAGCGACGGTGA-TGACAGGACTTCAGTCTGCATCAATGGCGGAGAATATTC 380
|||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||
Sbjct 218 GTTGACGGCAGCGACGGT-AGTGACGGGACTTCAGCCTGCATCAATGGCGGAGAATATTC 276
Query 381 CtttttttGGTATAAGAAAGAAGCTCAA-AAAGGCAGAAGAAGAAGCGGTGGAGATCGTG 439
| || ||||||||||||||||| || || ||| |||||||||||||||||||||||||||
Sbjct 277 CGTTATTTGGTATAAGAAAGAAACTGAAGAAA-GCAGAAGAAGAAGCGGTGGAGATCGTG 335
Query 440 AAGGAAGGCTTTGAGTCGGCGGAGAAAGGTGTTGATGCGGCGGAGAGAGGATTAGAAGCG 499
|| |||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 336 AAAGAAGGCTTTGAGACGGCGGAGAAAGGCGTTGATGCGGCGGAGAAAGGATTAGAAGCG 395
Query 500 GCGGAGAGAGGTGTAGAGTCGGCGGAGAAGGAAATCGTGACGGCAGTTAGTTTTAATGGA 559
|||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||||||
Sbjct 396 GCGGAGAGAGGTGTAGAGACGGCAGAGAAGGAAATCGTGACGGCGGTTAGCTTTAATGGA 455
Query 560 TTGACACAAGCCGGAGCCGTTGTGGCGGCTGAGTTCGTCGGAGTTCTTGTCGCTACGTCA 619
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 456 TTGACACAAGCTGGAGCCGTCGTGGCGGCTGAGTTCGTCGGAGTTCTTGTCGCTACGTCA 515
Query 620 GTCGTGAATGGGATTTTAGGACCAGAAGCCCAGAAATCTTAGGA-TAAATCTAATGCTAT 678
|| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 516 GTAGTGAATGGGATTTTAGGACCAGAAGCCCAGAAATCTTAGGAATAAC-CTAATGCTAT 574
Query 679 ATGT 682
|||
Sbjct 575 GTGT 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33003834579
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5