BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481240
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
AT2G23780.1 | Symbols: | RING/U-box superfamily protein | chr2... 1395 0.0
> AT2G23780.1 | Symbols: | RING/U-box superfamily protein | chr2:10123306-10124636
REVERSE LENGTH=1101
Length=1101
Score = 1395 bits (755), Expect = 0.0
Identities = 969/1066 (91%), Gaps = 39/1066 (4%)
Strand=Plus/Plus
Query 1 GGAACTTTCTTT-CC--CAACAGTAAGACTCTGtttttttCCCCACA-ATGTCTGGTTTC 56
|||||||||||| || |||||||||||||||| |||||| |||| | ||||||||||||
Sbjct 8 GGAACTTTCTTTCCCAACAACAGTAAGACTCTG-TTTTTT-CCCA-AGATGTCTGGTTTC 64
Query 57 CTCTTTTGTTTCGTCCAAA----T-C--TTT----AT-ATG------T-TTTTGTGCTGA 97
||||||||||||||||||| | | ||| || || | |||| ||||||
Sbjct 65 CTCTTTTGTTTCGTCCAAATCTCTACTTTTTAGGGATCTTGTCCTTCTCTTTTCTGCTGA 124
Query 98 TTAAAACCCTCGACTTTGATCCAATCTCTTCAAG-AAAACGGCATTGAGATGGTGAATGG 156
||||||||||||| |||| |||||| || | | |||| ||||||||||||||||||||
Sbjct 125 TTAAAACCCTCGAATTTGCTCCAAT-TCGACGCGAAAAAGGGCATTGAGATGGTGAATGG 183
Query 157 AGAATCATCAACTAGTACGTCTTACTCTGATAATAACAATGGTGCAAATGATCAAGGAGG 216
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 184 AGAATCATCAACTAGTACGTCTTACTCTGATAGTAACAATGACACAAATGATCAAGGAGG 243
Query 217 AGACTTTGAATGTAACATTTGTTTTGAGTTAGCTCAAGATCCGATTGTCACTCTCTGTGG 276
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 244 AGACTTTGAATGTAACATTTGTTTCGAACTAGCTCAAGATCCGATTGTCACTCTCTGTGG 303
Query 277 CCATCTCTTTTGCTGGCCTTGCTTATACCGTTGGCTTCACCACCATTCGCATTCTCAAGA 336
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 304 CCATCTCTTTTGCTGGCCTTGCTTATACCGTTGGCTTCACCACCATTCACATTCTCAAGA 363
Query 337 ATGTCCGGTTTGTAAAGCCGTGGTTCAAGACGATAAGCTTGTTCCTCTTTATGGTAGAGG 396
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 364 ATGTCCGGTTTGTAAAGCCGTGGTTCAAGACGATAAGCTTGTTCCTCTTTACGGTAGAGG 423
Query 397 CAAGAACCAGACTGACCCGAGATCTAAACGTTATCCGGGGTTGCGGATTCCTAACCGACC 456
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 424 CAAGAACCAGACTGACCCGAGATCAAAACGTTATCCGGGTTTACGGATTCCTAACCGACC 483
Query 457 AACAGGTCAAAGACCCGAGACCGCGGCTCCTCCTCCTCAGCCTGAAGCAGCGAGTAATTT 516
||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 484 AACAGGTCAAAGACCTGAGACTGCTGCTCCTCCTCCTCAGCCTGAAGCTGCGAGTAATTT 543
Query 517 TTTCAACTATGGTATTGGTTTGATGGGTGGAATTATGCC-A--ATGGCGACTACTAGGAT 573
||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||| |
Sbjct 544 TTTCAACTACGGTATTGGTTTGATGGGTGGAATTATGCCGATGATGGCGACTACGAGGTT 603
Query 574 CGGGAATTTCAGTATGGGGTTTGGTGGTTTGTTGCCTTCTTTGTTTAACTTTCAGTTTCA 633
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 604 TGGGAATTTCAGTATGGGGTTTGGTGGTTTGTTACCTTCTTTGTTTAACTTTCAGTTTCA 663
Query 634 TGGATTTCCCGATGCTACGCTTTATGGTTCAACAGCGGGTTACCCTTACGGTGGTTATCA 693
|||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 664 TGGATTTCATGATGCTACGCTTTATGGTTCAACACCGGGTTATCCTTACGGTGGTTATCA 723
Query 694 TAATGGTTTCCGTGGAGTTCCTCCTCATGGACAAGAGCGTCCGATGGCTCGTGGAGGAAA 753
||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 724 TAACGGTTTCCGTGGAGTTCCTCCTCGTGGACAAGAGCGTCCTATGGCTCGTGGAGGAAA 783
Query 754 CCAAAGCGATGCAACTCTGAAGAATATCTTAATAGTTGTTGGAATTTGCGTGGTGTTATT 813
|||||| |||||| ||||||||||||| | | |||||||||| || |||||| ||||
Sbjct 784 CCAAAGTGATGCATTTCTGAAGAATATCCTCTTTTTTGTTGGAATCTGTGTGGTGATATT 843
Query 814 TCTT-TGCTGGTGAAAACGAATCACATTTGGTTTATTTCCAGGTATGATCAAACTCACTT 872
||| | ||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 844 TCTCAT-CTGGTGAAAACGAATCACATTTGGTGTATTTCCAGGTATGATCAAACTTACTT 902
Query 873 ACTTGGTGCAAGTTGTGTATGTAAATATGGTAATAGCTGAGTGT-CTGTGTTTGCTATTT 931
|||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 903 ACTTGGTGCAAGTTGTGTATGTAAATATGGTAATAGCTGAGTGTACT-TGTCTGCTATTT 961
Query 932 CAACGTCGTTATTGTATTTTTGTTTTGAAGATGAAACTTGAGTCTATAAGCTTTTT-ACA 990
| |||| |||||||||||||||||||||||||||| | |||||||| ||||||||| |||
Sbjct 962 CGACGTTGTTATTGTATTTTTGTTTTGAAGATGAACCGTGAGTCTACAAGCTTTTTTACA 1021
Query 991 CAACTCTTTGTCTTGCTT--GTGTTTTGTCTAAGCATCTTGTGAAA 1034
||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 1022 CAACTCTTT-TGTTGCTTTTGTGTTTTGTCTAAGCATCTTGTGAAA 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50686254323
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5