BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481264 Length=1085 Score E Sequences producing significant alignments: (Bits) Value AT2G24060.1 | Symbols: | Translation initiation factor 3 prote... 1291 0.0 AT3G30122.1 | Symbols: | pseudogene similar to peptide chain r... 111 1e-23 > AT2G24060.1 | Symbols: | Translation initiation factor 3 protein | chr2:10229385-10231563 FORWARD LENGTH=1180 Length=1180 Score = 1291 bits (699), Expect = 0.0 Identities = 852/922 (92%), Gaps = 26/922 (3%) Strand=Plus/Plus Query 1 TTCTGGATAAGAGCTTCGCGAAGGTTTGAAACCTCTGAGTGAAGAAGAAGCGCCATGGCT 60 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 15 TTCTGGATAAGAGCTTCGTGATGGTTTGAAACCTCTGAGTGAAGAAGAAGCGCCATGGCT 74 Query 61 GGGATTA-C--CAGCACCGTCGGATTCAACGCCGTTTTCGCCGGAATCACCAAAACAGTA 117 ||||||| | ||||||||| |||||||||||||| ||| ||||||| |||||||||||| Sbjct 75 GGGATTACCAGCAGCACCGTTGGATTCAACGCCGTCTTCACCGGAATAACCAAAACAGTA 134 Query 118 TCATCACATTCACTATTCGCCGTCGATTCCAAACTCTGTGGACTTCGTCTCTCCAAAACC 177 |||||||||||||| ||| | || ||||||||||||||| | |||||||||||||||||| Sbjct 135 TCATCACATTCACTCTTCTCTGTTGATTCCAAACTCTGTAGTCTTCGTCTCTCCAAAACC 194 Query 178 GAACTTTCCTTCGCAAATCTCACTCCTACTCCTCGCCGTGGC-TTCACCGTCACTTGCCG 236 ||||| || ||| | |||||||||||| ||||||||||| || ||| ||||||||||||| Sbjct 195 GAACTGTCTTTCACTAATCTCACTCCTTCTCCTCGCCGT-GCTTTCGCCGTCACTTGCCG 253 Query 237 CTTCGGCggtggtggtggtggtggCGGAGGTTATCGTTTCTCTGGAGATTCTAGACGAGG 296 ||||||| ||||||||| ||||||||||| ||||||||||| |||| |||| Sbjct 254 CTTCGGC------GGTGGTGGT---GGAGGTTATCGATTCTCTGGAGACAATAGAAGAGG 304 Query 297 TAGGCCTAAAGAAGCCGAAATTGATGAAGCGCTTGATATCTCCTCAATTAGGTCAGCTAC 356 |||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 305 TAGGCCGAAAGAAGCTGAAATTGATGAAGCTCTTGATATCTCCTCAATTAGGTCAGCTAC 364 Query 357 TGTTAGGCTTATCGATGGACAACAAAACATGCTTGGTTTAGTGTCTAAAGACGAAGCCGT 416 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 365 TGTTAGGCTTATCGATGGGCAACAAAACATGCTTGGTTTAGTGTCTAAAGACGAAGCCGT 424 Query 417 TCGAATGGCTGATGATGCTGAGCTTGATCTGGTGATATTATCGCCTGATGCAGATCCTCC 476 ||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| Sbjct 425 TCGAATGGCTGATGATGCTGAACTTGATCTGGTTATACTATCGCCTGATGCAGATCCTCC 484 Query 477 GGTTGTTAAAATGATGGATTACAGTAAATACAGATACGAACAGCAAAAGAGGAAAAAAGA 536 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 485 GGTTGTTAAAATGATGGACTACAGTAAATACAGATACGAACAGCAAAAGAGGAAAAAAGA 544 Query 537 TCAGCAAAAGAAAACCACTCGCATGGACTTAAAGGAGCTTAAAATGGGTTACAACATTGA 596 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||| Sbjct 545 TCAGCAAAAGAAAACAACTCGCATGGATTTAAAGGAGCTTAAAATGGGTTATAATATTGA 604 Query 597 TCAGCATGATTATTCCGTTCGGT-TAAGGGCTGCCCAAAAGTTCTTGCAAGATGGTGACA 655 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 605 TCAGCATGATTATTCCGTTC-GTCTAAGGGCTGCCCAAAAGTTCTTGCAAGATGGTGACA 663 Query 656 AGGTTAAGGTGATTGTGAGCATGAAAGGACGAGAAAACGAGTTCAGAAATATCGCTATTG 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 664 AGGTTAAGGTGATTGTGAGCATGAAAGGACGAGAAAACGAGTTCAGAAATATCGCTATTG 723 Query 716 AACTCCTCAGACGTTTTCAAACCGAAATAGGGGAGCTTGCGACTGAAGAGAGCAAAAACT 775 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 724 AACTCCTCAGACGTTTCCAAACCGAAATAGGGGAGCTTGCAACTGAAGAGAGCAAAAACT 783 Query 776 TCAGGGACAGAAACT-TGTTCATTATCTTGGTACCAAACAAGGAAATGATTCGGAAACCA 834 ||||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||| Sbjct 784 TCAGGGACAGAAA-TATGTTCATTATCTTGGTCCCAAACAAAGAAATGATTCGGAAACCA 842 Query 835 CAAGAACCAGCCTCAAGAAAGAAGAAAAAA-CAATCGGAAAACGAAGTTTCAG-TT--GC 890 ||||||||| || ||||||||||||||||| || |||||||||||| ||||| || || Sbjct 843 CAAGAACCACCCACAAGAAAGAAGAAAAAAACAG-CGGAAAACGAAGCTTCAGCTTCAGC 901 Query 891 ---AGAAATAACGGCTGAGCCT 909 ||||||||| ||||||||| Sbjct 902 TGCAGAAATAACAGCTGAGCCT 923 Score = 276 bits (149), Expect = 4e-73 Identities = 173/184 (94%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 904 GAGCCTCTGCAAATCGAGTCTGGAGTTT-AAATCTTATGGTAAGGATTTTGAGAGCTAAA 962 |||||||| || ||||| ||| |||||| ||||||| |||| |||||||| ||||||||| Sbjct 984 GAGCCTCTACAGATCGATTCTTGAGTTTAAAATCTTGTGGT-AGGATTTTCAGAGCTAAA 1042 Query 963 GTAAAGTTTTGTATATTTACTTTTCTACCATGTCTCAAGAGAGTCAAGAGCTGTATAACA 1022 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1043 GTAAAGTTTTGTATATTTACTTTTCTACCATGTCTCAAGAGAGCCAAGAGCTGTATAACA 1102 Query 1023 AATAGAATTAGTCCTATTTGAATGATGTTCTTC-TTTGTAGATCTTTTCTCTAATCTATT 1081 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1103 AATAGAGTTAGTCCTATTTGAATGATGTTCTTCGTTTGTAGATCTTTTCTCTAATCTATT 1162 Query 1082 TTTT 1085 |||| Sbjct 1163 TTTT 1166 > AT3G30122.1 | Symbols: | pseudogene similar to peptide chain release factor protein | chr3:11758491-11760858 REVERSE LENGTH=2368 Length=2368 Score = 111 bits (60), Expect = 1e-23 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 387 GCTTGGTTTAGTGTCTAAAGACGAAGCCGTTCGAATGGCTGATGATGCTGAGCTTGATCT 446 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1016 GCTTGGTTTAGTGTCTAAAGACGAAGCCGTTCGAATGGCTGATGATGCTGAACTTGATCT 1075 Query 447 GGT 449 ||| Sbjct 1076 GGT 1078 Score = 75.0 bits (40), Expect = 1e-12 Identities = 42/43 (98%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 345 TAGGTCAGCTACTGTTAGGCTTATCGATGGACAACAAAACATG 387 |||||||||||||||||||||||||||||| |||||||||||| Sbjct 888 TAGGTCAGCTACTGTTAGGCTTATCGATGGCCAACAAAACATG 930 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53162377155 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5