BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481266 Length=714 Score E Sequences producing significant alignments: (Bits) Value AT2G24090.1 | Symbols: | Ribosomal protein L35 | chr2:10241964... 1042 0.0 > AT2G24090.1 | Symbols: | Ribosomal protein L35 | chr2:10241964-10243614 FORWARD LENGTH=710 Length=710 Score = 1042 bits (564), Expect = 0.0 Identities = 668/717 (93%), Gaps = 11/717 (2%) Strand=Plus/Plus Query 1 ATCTTCTTCATCATCTC-TTCCTCAATCGGAGTGAGTACAAAAGATCCAAAAAATCGCCG 59 ||||||||||||||||| |||||||||||||||||| ||||| || |||||| |||||| Sbjct 1 ATCTTCTTCATCATCTCTTTCCTCAATCGGAGTGAGCGCAAAAAAT-CAAAAATTCGCCG 59 Query 60 AGAGCACAAACCCTAATGGCTTCTCTCTCAATGGCTTCCGTTAACGTTAGCTTCTGTCAT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 AGAGCACAAACCCTAATGGCTTCTCTCTCAATGGCTTCCGTTAACGTTAGCTTCTGTCAT 119 Query 120 CCTTTACGCTCTTCTTCTCCAAAGGTTTCACTTCGCAGTTCCGTTCAATTCGCGACGAGT 179 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 120 CCTTTACGCTCTTCTTCTCCAAAGGTCTCACTTCGCAGTTCCGTTCATTTCGCGACGAGT 179 Query 180 CTTGCTTCAAGTCACTCCATTTCTGGGCTTCGCGCTGTTTTTCCTCAGAAGATTTCTACA 239 ||| | ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 180 CTTTCCTCAAGTCACTCCATTTCTGGGCTTCGCGCTGTTTTGCCTCTGAAGATTTCTACA 239 Query 240 GTTGCTTCTCCCAATTCCCAAAAGTTTCAGTCTTTTACCGTTTTCGCTCATAAGGGTTAC 299 |||||||| |||||||| |||||| |||| |||||||||||||||||||||||||| ||| Sbjct 240 GTTGCTTCCCCCAATTCTCAAAAGCTTCATTCTTTTACCGTTTTCGCTCATAAGGGCTAC 299 Query 300 AA-ATTGAAGACCCACAAGGCCTCAGCGAAGCGGTTTAGGGTGACGGGTAGGGGGAAGAT 358 || || |||||||||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct 300 AAGAT-GAAGACCCACAAGGCCTCAGCGAAGCGGTTCAGAGTGACGGGTAGAGGGAAGAT 358 Query 359 TGTGAGGAGGAGATCCGGAAAGCAGCATTTGTTAGCTAAGAAGAACAACAAGAGGAAATT 418 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 TGTGAGGAGGAGATCTGGAAAGCAGCATTTGTTAGCTAAGAAGAACAACAAGAGGAAATT 418 Query 419 GCGTTTATCGAAAATGACCGAAGTGAACCGGAGCGACTATGACAATGTGATCGGCGCTCT 478 ||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| Sbjct 419 ACGTCTATCGAAAATGACGGAAGTGAACCGGAGCGACTATGACAACGTGATCGGAGCTCT 478 Query 479 ACCATACTTGAAAGTCAATCGAAAGGCGACTTAAGCAGAATAAGCTTGATCCTTTTCTTA 538 || ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 479 GCCCTACTTGAAAGTCAATCGAAAGGCGACTTAAGCAGAGCAGGCTTGATCCTTTTCTTA 538 Query 539 CCTGCAATTCTCGTTTTGTAATCTAAAGTTGTGGTAATATCCTTTTGTATTGTGATATAA 598 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 CCTGCAATTCTCATTTTGTAATCTAAAGTTGTGGTAATATCCTTTTGTATTGTGATATAA 598 Query 599 TTTGATCAATGAGTTGATTTT-GTTTCTTATTTGTGTCTCCTCTTGCTTGTCTCGCATGA 657 |||| |||||||||||||||| ||||| ||||||||||| || || |||||||||||||| Sbjct 599 TTTGGTCAATGAGTTGATTTTTGTTTCATATTTGTGTCTTCTTTTTCTTGTCTCGCATGA 658 Query 658 CAGACAAAACAAGGCTAGGTGTAACATATACCTCATCAACGAGTTTGGTCATTGATC 714 || || | | |||||||||||||||||||||||||||||||||||||||||| Sbjct 659 CA-ACTATTC-----TAGGTGTAACATATACCTCATCAACGAGTTTGGTCATTGATC 709 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34611327283 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5