BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481267 Length=1607 Score E Sequences producing significant alignments: (Bits) Value AT2G24100.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2386 0.0 AT4G30780.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 490 2e-137 > AT2G24100.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:10244886-10246919 FORWARD LENGTH=1640 Length=1640 Score = 2386 bits (1292), Expect = 0.0 Identities = 1470/1553 (95%), Gaps = 24/1553 (2%) Strand=Plus/Plus Query 66 AACAATTTTCCGGTGAAGTTAGAGATCGTTGAAGATTTTCTTGAAGAAGAACACGCTCCT 125 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 93 AACAATTTTCCGGTGAAGTTAGAGATCATTGAAGATTCTCTTGAAGAAGAACACGCTCCT 152 Query 126 CTCAACAAACGATCAAAGATATGGAGCAACAATGGAACAAGTGTCTCTAAGTTTAGTCTA 185 |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 153 CTCAACAAACGATCCAAGCTATGGAG---CAATGGAACAAGTGTCTCTAAGTTTAGTCTA 209 Query 186 CTTGAAGAGCCAAGTCCTTTGGGTTTGAGTTTAAAGAAGAGCCCATCTTTTCAAGAACTG 245 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 210 CTTGAAGAGCCAAGTCCTTTGGGGTTGAGTTTAAAAAAGAGCCCATCTTTTCAAGAACTG 269 Query 246 ATTCAGATGAAACTTTCTCAAAGTGGTGATGACACAAAGTCGGTTAAGAAAGAAAGTTTT 305 ||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 270 ATTGAGATGAAACTTTCTCAAAGTGGTGATGACTCAAATTCGGTTAAGAAAGAAAGTTTT 329 Query 306 GG-TTT--TGGTATAGGAACCGTTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACGGTT 362 || ||| |||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 330 GGTTTTGGTGGTGTAGGAACCGTTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACTATT 389 Query 363 CTTAGGATTGGTCAATGGGAGTATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAATGT 422 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 390 CTCAGGATTGGTCAATGGGAGTATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAATGT 449 Query 423 TATTTTGCAAAGCATAAACTTGTATGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATT 482 || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 450 TACTTTGCAAAACATAAACTTGTGTGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATT 509 Query 483 GAGATTCAGTGGTCTGATATTATGGCTTTGAAGGCTAATTTATCGGAAGATGAACCTGGA 542 ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| Sbjct 510 GAGATTCAGTGGTCTGATATTATGGCTTTGAAGGCTAATTTGCCAGAGGATGAACCTGGA 569 Query 543 ACGCTGACTATCGTGCTGGCTAGGCGGCCGTTGTTTTTTAGGGAAACTAATCCGCAGCCT 602 || |||||||| ||||||||||||||||| |||||||| || |||||||||||||||||| Sbjct 570 ACCCTGACTATTGTGCTGGCTAGGCGGCCATTGTTTTTCAGAGAAACTAATCCGCAGCCT 629 Query 603 AGAAAACATACTTTGTGGCAGGCGACATCGGATTTTACTGATGGTCAAGCCAGCATGAAC 662 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 630 AGAAAACATACTTTGTGGCAGGCGACATCGGATTTTACTGATGGTCAAGCTAGCATGAAC 689 Query 663 AGGCAACATTTTCTGCAGTGTGCCCCAGGGA-TATTGAATAAACATTTCGAGAAGCTTGT 721 ||||||||||||||||||||| ||||||||| || |||| |||||||| ||||||||||| Sbjct 690 AGGCAACATTTTCTGCAGTGTCCCCCAGGGATTA-TGAACAAACATTTTGAGAAGCTTGT 748 Query 722 CCAATGTGATCATCGCTTGTTCTGTCTAAGCCGACAGCCAGAGATAAATTTGGCATCACC 781 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| Sbjct 749 TCAATGTGATCATCGCTTGTTCTGTCTAAGCCGGCAGCCAGAGATAAACTTGGCCGCACC 808 Query 782 GTTCTTTGATTCACGACAATCAATATTTGAGGATCCCTCAGTGTCTGGATCTCATAATAT 841 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 809 GTTCTTTGATTCACGACTATCTATATTTGAGGATCCCTCAGTGTCTGGATCTCATAATAT 868 Query 842 TGCATCTCCTGTTGGGGCTCAGTCGTCATCAGAACATGTGTCTCTATCTCATGACGCACT 901 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 869 TGCATCTCCTGTTGGGGCTCAGTCATCATCAGAACATGTGTCTCTATCTCATGACGCACT 928 Query 902 ATCGCCTAGCTCAGTGATGGATGCTCGTGCAATTGAAGGAGTTGGTGGTTCCGTTGATTC 961 ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 929 ATCGCCTAGCTCAGTGATGGATGCTCGTGCAATCGAAGGAGTTGGTGGTTCCATTGATTC 988 Query 962 GAGGAATACAAACGGTTGGAGTCAGATAAAAATGCCTGGACTACACCAGTCTATCTCGAT 1021 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 989 GAGGAATACAAACGGTTGGAGTCAGATAAAAATGCCTGGACTACACCAATCTATCTCGAT 1048 Query 1022 GAACGATTTCCTTACGTTTTTGTCAGATCAAGCTTGTGAAAACAACCAAGAATTTGAGGA 1081 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1049 GAACGATTTCCTTACGTTTTTGTCAGATCAAGCTTGTGAAAACAACCAAGAGTTTGAGGA 1108 Query 1082 AATGAAACAGATACTGCTAAGTG---ACACTCAAACCGATCCATCGGATGAGAAGTCTGT 1138 |||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 1109 AATGAAACAGTTACTGCTAAGTGACAACACTCAAACCGATCCATCTGATGAGAAGTCTGT 1168 Query 1139 CATGTCAAAGGTGAATTCTTTCTGCAACCTCTTGCAATCTGCTGCAAATTCACATCTCAA 1198 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 1169 CATGTCAAAGGTGAATTCTTTCTGCAACCTCTTGCAATCTGCTGCAAACTCACAGCTCAA 1228 Query 1199 TATCGAAAATGCTGACACCGGTAAAGAG--ATTGGGGTCGATAACAATAGTAGACACATG 1256 |||||||| |||||| ||| | |||||| |||||||||||||| | | |||||||||| Sbjct 1229 TATCGAAACTGCTGATACC-G-AAAGAGTTGTTGGGGTCGATAAC-A-A-TAGACACATG 1283 Query 1257 ACCGAAGGAGGCAAAAGAGTTGTTGATCCTGCTTCAAGCAGCAAGCCACTACAGGGGATG 1316 ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1284 CCCGAAGGAGGCAAAAGAGTTGTTGACCCTGCTTCAAGCAGCAAGCCACTACAAGGGATG 1343 Query 1317 TCAAGGAAAGACTCATTCAGTGATTTGCTGGTACACCTTCCTCGGATCACATCCCTCCCA 1376 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| Sbjct 1344 TCAAGGAAAGACTCATTCAGTGATTTGCTGGTGCACCTTCCTCGAATCACATCACTCCCA 1403 Query 1377 AAGTTCTTGTTCAACATTTCAGAAGAAGACTAGTAGATAGTGAACCGAAAAGTTCTTGTT 1436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1404 AAGTTCTTGTTCAACATTTCAGAAGAAGACTAGTAGATAGTGAACCGAAAAGTTCTTGTT 1463 Query 1437 CTAGGAATCTTGAACAAGTAGCTGTAAATCGAATTATCTCTCTAGCTCGTTCATAAGGAT 1496 |||||||||||||||||||||||||||||| |||||||||||| | |||| ||||||| Sbjct 1464 CTAGGAATCTTGAACAAGTAGCTGTAAATCAAATTATCTCTCT--C--GTTCTTAAGGAT 1519 Query 1497 TTGGAGGAACTTTTGTGTTTGATGATGAATCCTTGTAAAGAAATGCTTTTGTGATGGCGT 1556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1520 TTGGAGGAACTTTTGTGTTTGATGATGAATCCTTGTAAAGAAATGCTTTTGTGATGGCGT 1579 Query 1557 TTTCTAAAAGCCATTT-TGTTTT-GAGACATTAACAAAACTTTAATATTGCTT 1607 |||||||||||||||| | |||| || ||||||||||||||||| |||||||| Sbjct 1580 TTTCTAAAAGCCATTTCTTTTTTTGAAACATTAACAAAACTTTATTATTGCTT 1632 Score = 100 bits (54), Expect = 3e-20 Identities = 61/64 (95%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 1 ACTCTCTTAGATTCTCAGGGTTTTGTGATTTTTT-CATGGTGGAGATGATGAGATCAGAG 59 ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 1 ACTCTCTTAGATTCTCAGGGTTTTGTG-TTTTTTGGATGGTGGAGATGATGAGATCAGAG 59 Query 60 AATC 63 |||| Sbjct 60 AATC 63 > AT4G30780.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24100.1); Has 109 Blast hits to 109 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr4:14990341-14993069 FORWARD LENGTH=2166 Length=2166 Score = 490 bits (265), Expect = 2e-137 Identities = 423/499 (85%), Gaps = 12/499 (2%) Strand=Plus/Plus Query 325 TTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACGGTTCTT-AGGATTGGTCAATGGGAG 383 |||||||||| ||||||||||||||||||||| || || || | ||| || || |||||| Sbjct 580 TTGAGAAGCTGAAAGCTTCTAACTTTCCTGCTTCGCTT-TTGAAGATCGGGCAGTGGGAG 638 Query 384 TATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAA-TGTTATTTTGC-AAAGCATAAAC 441 ||||| || ||||||||||||||||||||||| ||| ||||| ||||| ||| || |||| Sbjct 639 TATAAATCGAGGTATGAAGGTGATTTGGTGGC-AAAGTGTTACTTTGCTAAA-CACAAAC 696 Query 442 TTGTATGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATTGAGATTCAGTGGTCTGATA 501 |||| ||||||||||||||||||||||||||||| || || ||||| |||||||| |||| Sbjct 697 TTGTTTGGGAAGTGTTGGAACAAGGTCTTAAGAGTAAAATCGAGATCCAGTGGTCAGATA 756 Query 502 TTATGGCTTTGAAGGCTAATTTATCG-GAAGATGAACCTGGAACGCTGACTATCGTGCTG 560 |||||||||||||||| || | || ||||| | ||||||||| ||||| ||||||| Sbjct 757 TTATGGCTTTGAAGGCAAACTG-TCCTGAAGACGGACCTGGAACTTTGACTCTCGTGCTT 815 Query 561 GCTAGGCGGCCGTTGTTTTTTAGGGAAACTAATCCGCAGCCTAGAAAACATACTTTGTGG 620 ||||| | ||| || ||||| ||||||| || || ||||||||||| ||||| |||||| Sbjct 816 GCTAGACAGCCCTTATTTTTCCGGGAAACAAACCCACAGCCTAGAAAGCATACCTTGTGG 875 Query 621 CAGGCGACATCGGATTTTACTGATGGTCAAGCCAGCATGAACAGGCAACATTTTCTGCAG 680 ||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct 876 CAGGCGACATCAGATTTCACTGATGGCCAAGCCAGCATGAACAGGCAGCATTTTCTGCAA 935 Query 681 TGTGCCCCAGGGATATTGAATAAACATTTCGAGAAGCTTGTCCAATGTGATCATCG-CTT 739 ||||| | ||||||| |||| |||||||| || ||||| || |||||||||||||| || Sbjct 936 TGTGCTCAAGGGATAATGAACAAACATTTTGAAAAGCTCGTTCAATGTGATCATCGTCT- 994 Query 740 GTTCTGTCTAAGCCGACAGCCAGAGATAAAT-TTGGCATCACCGTTCTTTGATTCACGAC 798 |||| ||||||||||||||| |||||| | ||| | || || | ||||||| |||| | Sbjct 995 GTTCCATCTAAGCCGACAGCCGGAGATAGCTATTGAC-TCTCCCTACTTTGATGCACGGC 1053 Query 799 AATCAATATTTGAGGATCC 817 |||| || ||||||||||| Sbjct 1054 AATCTATTTTTGAGGATCC 1072 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79367061645 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5