BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481283
Length=2031
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24270.4 | Symbols: ALDH11A3 | aldehyde dehydrogenase 11A3 |... 2468 0.0
> AT2G24270.4 | Symbols: ALDH11A3 | aldehyde dehydrogenase 11A3
| chr2:10327035-10329941 REVERSE LENGTH=1823
Length=1823
Score = 2468 bits (1336), Expect = 0.0
Identities = 1449/1505 (96%), Gaps = 1/1505 (0%)
Strand=Plus/Plus
Query 296 TTTTGTTTCAGACATCAAATGGCGGGGACTGGATTGTTTGCAGAGATTCTTGATGGAGAA 355
|||||||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 221 TTTTGTTTCAGAGATC-AATGGCCGGGACTGGATTGTTTGCTGAGATTCTTGATGGAGAA 279
Query 356 GTCTACAAATACTACGCTGATGGAGAGTGGAAAACCTCTTCCTCAGGTAAGAGTGTAGCC 415
|| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 280 GTATACAAATACTACGCTGATGGTGAGTGGAAAACTTCTTCCTCAGGTAAGAGTGTTGCC 339
Query 416 ATCATTAACCCGGCCACAAGGAAGACACAGTACAAGGTTCAAGCATGCACACAAGAAGAA 475
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 340 ATCATGAACCCGGCCACGAGGAAGACACAGTACAAGGTTCAAGCATGCACGCAAGAAGAA 399
Query 476 GTGAACGCGGTGATGGAACTGGCGAAATCGGCTCAGAAATCGTGGGCGAAAACTCCTCTT 535
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 400 GTGAACGCGGTGATGGAACTGGCGAAATCAGCTCAGAAATCGTGGGCGAAAACTCCTCTT 459
Query 536 TGGAAAAGAGCTGAGCTTCTTCACAAAGCTGCTGCGATCCTCAAGGACAACAAAGCTCCT 595
|||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct 460 TGGAAAAGAGCTGAGCTTCTTCACAAGGCTGCAGCAATCCTTAAGGACAACAAAGCTCCC 519
Query 596 ATGGCTGAGTCTCTTGTCAAGGAAATCGCTAAACCCGCCAAAGATTCTGTTACTGAGGTT 655
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 520 ATGGCTGAGTCTCTTGTTAAAGAAATCGCTAAACCCGCCAAAGATTCTGTTACTGAGGTT 579
Query 656 GTGAGGTCTGGAGATTTGATCTCTTATTGTGCTGAAGAAGGTGTTAGGATCTTAGGTGAA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 GTGAGGTCTGGAGATTTGATCTCTTATTGTGCTGAAGAAGGTGTTAGGATCTTAGGTGAA 639
Query 716 GGGAAGTTTCTTCTCTCTGATAGCTTCCCCGGTAATGACCGTACTAAGTACTGCCTCACT 775
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GGGAAGTTTCTTCTCTCCGATAGCTTCCCCGGTAATGACCGTACTAAGTACTGCCTCACT 699
Query 776 TCCAAGATCCCGCTCGGTGTGGTTTTGGCTATTCCTCCATTCAATTATCCGGTCAATCTC 835
|||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 700 TCCAAGATTCCACTCGGTGTGGTTTTGGCTATTCCTCCATTCAATTATCCAGTTAATCTC 759
Query 836 GCTGTGTCAAAGATCGCACCTGCTTTGATCGCCGGAAACTCCCTTGTCCTCAAACCTCCA 895
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 GCTGTATCGAAGATCGCTCCTGCTTTGATCGCCGGAAACTCCCTTGTCCTCAAACCTCCA 819
Query 896 ACTCAAGGAGCCGTTTCTTGCCTTCATATGGTACATTGCTTTCACTTAGCCGGTTTCCCA 955
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 820 ACTCAAGGAGCTGTTTCTTGCCTTCACATGGTACATTGCTTTCACTTAGCCGGTTTCCCA 879
Query 956 AAAGGTCTTATCAGCTGCATTACCGGAAAAGGATCTGAGATCGGAGATTTCCTTACTATG 1015
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 880 AAAGGTCTTATCAGCTGCATCACCGGAAAAGGATCTGAGATCGGCGATTTCCTCACTATG 939
Query 1016 CATCCTGCTGTTAACTGCATTAGTTTCACGGGTGGTGATACCGGAATCTCAATCTCTAAG 1075
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 940 CACCCTGCTGTTAACTGCATTAGTTTCACGGGTGGTGATACCGGAATCTCAATCTCAAAG 999
Query 1076 AAAGCTGGTATGATCCCTCTTCAAATGGAACTTGGAGGTAAAGATGCATGCATTGTCCTA 1135
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1000 AAAGCTGGTATGATCCCTCTTCAAATGGAACTTGGAGGTAAAGATGCATGCATTGTTCTA 1059
Query 1136 GAGGATGCTGATCTTGATTTAGTTGCTTCCAATATCATCAAAGGAGGATTCTCTTACAGC 1195
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 GATGATGCTGATCTTGATTTAGTTGCTTCCAATATCATCAAAGGAGGATTCTCTTACAGC 1119
Query 1196 GGGCAGAGATGCACTGCGGTTAAGGTAGTCCTAGTAATGGAATCAGTGGCGGATGAGGTT 1255
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 1120 GGGCAGAGATGCACTGCGGTTAAGGTAGTCCTAGTGATGGAATCAGTAGCGGATGAGCTT 1179
Query 1256 GTTGAAAAAGTGAAAGCTAAAGTGGCCAAACTCACGGTGGGACCACCGGAAGAGAACTCC 1315
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1180 GTTGAGAAAGTGAAAGCTAAAGTGGCCAAACTCACGGTGGGACCGCCCGAAGAGAACTCC 1239
Query 1316 GATATTACGGCTGTTGTGTCGGAATCTTCAGCTAATTTCATTGAAGGATTGGTGATGGAT 1375
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 GATATCACGGCAGTGGTGTCGGAATCTTCAGCTAATTTCATTGAAGGATTGGTGATGGAT 1299
Query 1376 GCTAAGGAGAAAGGAGCAACCTTTTGTCAAGAGTATAAAAGAGAAGGTAACTTGATTTGG 1435
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1300 GCTAAGGAGAAAGGAGCAACGTTTTGTCAAGAGTATAAAAGAGAGGGTAACTTGATTTGG 1359
Query 1436 CCGTTGCTTTTGGACAATGTTAGACCGGACATGAGGATAGCGTGGGAGGAACCATTCGGT 1495
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1360 CCGTTGCTTTTGGATAATGTTAGACCGGACATGAGGATCGCGTGGGAGGAACCATTCGGT 1419
Query 1496 CCTGTCGTGCCCGTCTTGAGGATCAATTCTGTTGAAGAAGGGATTAATCATTGCAATGCT 1555
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 CCTGTTGTGCCGGTCTTGAGGATCAATTCTGTTGAAGAAGGGATTAATCATTGCAATGCA 1479
Query 1556 AGCAACTTTGGCCTCCAGGGATGTGTATTCACTAAAGACATCAACAAGGCAATACTGATC 1615
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 AGCAACTTTGGCCTTCAGGGATGTGTATTCACTAAAGACATCAACAAGGCAATACTGATC 1539
Query 1616 AGTGATGCAATGGAGACAGGAACGGTTCAGATCAACTCTGCGCCAGCTCGTGGACCGGAC 1675
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1540 AGTGATGCAATGGAGACAGGAACCGTTCAGATCAACTCTGCGCCAGCTCGTGGACCGGAC 1599
Query 1676 CACTTCCCTTTCCAGGGACTTAAGGACAGTGGAATAGGATCACAAGGTGTGACAAATAGC 1735
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1600 CACTTCCCTTTCCAGGGACTTAAGGACAGTGGAATAGGGTCACAAGGTGTGACAAATAGC 1659
Query 1736 ATCAATTTGATGACCAAAGTGAAGACCACTGTCATTAACTTGCCTACACCTTCTTACTCT 1795
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 ATCAATTTGATGACTAAAGTGAAGACCACTGTCATTAACTTGCCTACACCTTCTTACTCT 1719
Query 1796 ATGGG 1800
|||||
Sbjct 1720 ATGGG 1724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100652092725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5