BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481294
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24395.1 | Symbols: | chaperone protein dnaJ-related | chr2... 667 0.0
> AT2G24395.1 | Symbols: | chaperone protein dnaJ-related | chr2:10375470-10376265
FORWARD LENGTH=610
Length=610
Score = 667 bits (361), Expect = 0.0
Identities = 503/566 (89%), Gaps = 31/566 (5%)
Strand=Plus/Plus
Query 1 AAAAATGGCGACTTGGATAACGTTACAGCCTCCGAA-TTCATCTTATTTACGGCTCATGC 59
||||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||
Sbjct 24 AAAAATGGCGACTTGGATAACGTTACAGCCTCC-AATTTCATGTTATTTACGGCTGATGC 82
Query 60 CATCATCAGCGCCGT---C-GC--C-T---CG--AAGTC----AC--CGTTGTCTCCTTA 101
||||||||||||||| | || | | || ||| || ||| ||||| |||
Sbjct 83 CATCATCAGCGCCGTCGCCGGCTTCATCCACGTCGCGTCGAAAACAACGTCGTCTCTTTA 142
Query 102 AGCCATTTCGATGCGTTCCACTTC-AGCAACAAGAACCTCAGCTCGAGCAGTCGCAGCAG 160
|||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||
Sbjct 143 AGCCATTTCGATGCGTTCCACTTCAAG-AACAAGAGCCTCAGCTCGATCAGTCGCAGCAG 201
Query 161 GGATACGATGAA-GCAGTGATTTTGTGTGAGGACTGTAACGGAAAAGGATGGTTGCTCTG 219
||| |||| || || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 202 GGAGACGA-CAATGCTGTGATTTTGTGTGAGGATTGTAACGGGAAAGGATGGTTGCTCTG 260
Query 220 CGATTTCTGTAATGGACAGAAAACAAATGTGAAATCTGAGAACAATCGAATCTATCGACG 279
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 261 CGATTTCTGTAAAGGACAGAAAACAAATGTGAAATCTGAGAATAATCGAATCTATCGACG 320
Query 280 ATGTCCAACTTGTAAAGCTGTGGGATTTGTCTTGTGTAGAAAGTGTAAAGTGTTCAAGTG 339
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 321 ATGTCCAACTTGTAAAGCTGTGGGATTTGTGTTGTGTAGAAAATGTAAAGTGTTCAAGTG 380
Query 340 TGTCACGTTGCCTAATTCTGAAGACGGTGATGAACTTATGTTCTAAGCTCTCCTTGTTGT 399
|||||| || ||||| || |||||||| ||||||||| ||||||||| ||||||||| |
Sbjct 381 TGTCACATTTCCTAACTCAGAAGACGGCGATGAACTTTTGTTCTAAGAGCTCCTTGTTCT 440
Query 400 ATCAACACTCTTCTTCTCCAACTAAGGACACCATTTGAGTTTTCAGGTTCCTTTCTTCTT 459
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 441 AGCAACACTCTTCTTCTCCAACTAAGGACACCATTTGAGTTTTCAGGTTCCTTTCTTTTT 500
Query 460 CCAATTGTTATATATA-ACTGTTGTTCTT-ACTCGGATGTAGCCATATGTATGATAAGCA 517
|||||||||||||||| | | |||| ||| |||| |||||||||||||||| || |||
Sbjct 501 CCAATTGTTATATATATA-TATTGT-CTTTACTCATATGTAGCCATATGTAT-AT--GCA 555
Query 518 CTTTGTAACATTAATCAGACTAGTGA 543
| ||||||||||||||||||||||||
Sbjct 556 CATTGTAACATTAATCAGACTAGTGA 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26021288146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5