BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481310
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24540.1 | Symbols: AFR | Galactose oxidase/kelch repeat sup... 1620 0.0
AT2G24545.1 | Symbols: | other RNA | chr2:10425818-10427263 RE... 1081 0.0
> AT2G24540.1 | Symbols: AFR | Galactose oxidase/kelch repeat superfamily
protein | chr2:10426342-10427594 FORWARD LENGTH=1253
Length=1253
Score = 1620 bits (877), Expect = 0.0
Identities = 1036/1112 (93%), Gaps = 14/1112 (1%)
Strand=Plus/Plus
Query 33 GAAACAAGAACAAAAACTCAGCCATTGATCCCAGGTTTACCAAATGATATCGCTGAGCTT 92
||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 130 GAAACAAGAACAAAATCTCAGCCATTGATTTCAGGTCTACCAAATGATATAGCTGAGCTT 189
Query 93 TGTCTTCTTCGTCTTCCTTACCCATACCATGCTCTCTTTCGCTCTGTTTCATCTTCATGG 152
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 190 TGTCTTCTTCGTCTTCCTTACCCATACCATGCTCTATATCGCTCTGTTTCATCTTCATGG 249
Query 153 AACAAAACCATCACAAACCCTAGATTCCTCCTCTCCAAGCAATCTCTTTCTATCTCTTCT 212
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 250 AACAAAACCATCACAAACCCTAGATTCCTCTTCTCCAAGCAATCTCTTTCTATCTCTTCT 309
Query 213 CCTTACCTATTTGTCTTCGCTTTCAACAAATCAACGGCTAAGATTCAATGGCAATCCCTC 272
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 310 CCTTACCTATTTGTCTTCGCTTTCAACAAATCAACGGCTAGGATTCAATGGCAATCCCTT 369
Query 273 GACCTCGCATCTGGCCGTTGGTTTGTCTTACCTCCCATGCCAAACTCTTTCAACC-AAAT 331
||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct 370 GACCTTGCATCTGGCCGTTGGTTTGTTTTACCTCCCATGCCAAACTCTTTC-ACCAAAAT 428
Query 332 CTCGTCTCCTCACGCGCTCTCATGCGCGTCGAGT-CCACGTCAGGGGAAGCTTTTCGTCC 390
||||||||||||||| |||||||||||||||| | |||||||||||||||||||| || |
Sbjct 429 CTCGTCTCCTCACGCACTCTCATGCGCGTCGA-TGCCACGTCAGGGGAAGCTTTTTGTAC 487
Query 391 TCGGCGGCGGAGACT-TAAACCGCTCCGCCGTTGTTTACACGGCTTTAACGAATCGTTGG 449
||||||||||||| | |||||||||||||||| |||||||| ||| ||||||||||||||
Sbjct 488 TCGGCGGCGGAGA-TGTAAACCGCTCCGCCGTCGTTTACACTGCTCTAACGAATCGTTGG 546
Query 450 TCGTGTATTTCTCCGATGATGAGTCCGAGAACTTACTTTAACGCCGGGAATGTTAACGGC 509
|||||||| |||||||||||||| |||||||| ||||| | ||||||||||||||||
Sbjct 547 TCGTGTATATCTCCGATGATGAGCCCGAGAACGTACTTCGTCTCCGGGAATGTTAACGGT 606
Query 510 AAAATCATGGCCGTTGGTGGGAGTGTGGGCGGAAACGGAGAAGCGACGACGGAAGTTGAA 569
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 607 AAAATCATGGCCGTTGGTGGGAGTGTGGGCGGAAACGGAGAAGCAACTACGGAAGTTGAA 666
Query 570 TCGTACGATCCAGAGAATGACACGTGGACGGCTGTGAAGAAACTGCCGATGGTGTTGGCG 629
||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 667 TCGTATGATCCAGATAATGACACGTGGACGGTTGTGAAGAAGTTGCCGATGGTGTTGGCG 726
Query 630 AAGTATGACTCAGCCGTGATCGGGAAAAAGATGTGTGTGACAGAAGGATGGGCGTGGCCG 689
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 727 AAGTATGACTCAGCCGTGATCGGGAAAGAGATGTGTGTAACAGAAGGATGGGCGTGGCCG 786
Query 690 TTCATGTTTTCACCGATGGGACAAGTGTACGACTCAGATGAAGACACGTGGCGAGAGATG 749
||||||||| ||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 787 TTCATGTTTCCACCGATGGGACAAGTGTACGACTCCGACGAAGGCACGTGGCGAGAGATG 846
Query 750 AGCGGTGGGATGAAAGAAGGGTGGACGGGTGTGAGCGTCGTGATCCGCGACAGGTTGTTT 809
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 847 AGCGGTGGGATGAAAGAAGGGTGGACGGGTGTGAGCGTCGTGATCCGCGACAGGCTGTTT 906
Query 810 GTGATCTCCGAGCATGGTGATTTTCCGATGAAGGTGTATTGTTCAGATGATGACACGTGG 869
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 907 GTGATCTCGGAGCACGGTGATTTTCCGATGAAGGTTTATTGTTCAGATGATGACACGTGG 966
Query 870 AGGTACGTGAGTGGTGACAAGCTTCCTGCGGAGAAGATGCGGCGTCCTTTCGCCGTGACC 929
||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||||
Sbjct 967 AGGTACGTGAGTGGTGAGAAGCTACAGGGGGAGAAGATGCGGCGTCCTTTCGCCGTGAC- 1025
Query 930 GGGGAG--GATGATCGTGTGTTTGTGGTGGCCGGTGGGCTTAATGTAGCGGAAGGGAGAG 987
||| || |||||||||||||||||||||||| ||||| |||| ||||||||||||||||
Sbjct 1026 GGG-AGCTGATGATCGTGTGTTTGTGGTGGCCAGTGGGATTAACGTAGCGGAAGGGAGAG 1084
Query 988 TGAGT-AAGGGACAAAATGGGGAATTTAGTGTTCAGTGGAGGATGGTTTCGTCTCCCAAA 1046
||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 1085 TGAGTGAAGGG-CAAAATGGGGATTTTAGTGTTGAGTGGAGGATGGTTTCGTCTCCTAAA 1143
Query 1047 AGTTCTACTCAATTTTCACCTGCTAGTTGCCATGT-CTTATACGTCTAATATGTAATTGT 1105
||||||| ||| ||||||||||||||||| ||||| || ||| || | || |||||||||
Sbjct 1144 AGTTCTATTCAGTTTTCACCTGCTAGTTGTCATGTGCT-ATATGTTTGATGTGTAATTGT 1202
Query 1106 TGTTAGTTTTGAATTTGTAAAATCTTTTCACT 1137
||||||||||||||||||||| ||||||||||
Sbjct 1203 TGTTAGTTTTGAATTTGTAAACTCTTTTCACT 1234
> AT2G24545.1 | Symbols: | other RNA | chr2:10425818-10427263
REVERSE LENGTH=899
Length=899
Score = 1081 bits (585), Expect = 0.0
Identities = 672/714 (94%), Gaps = 6/714 (1%)
Strand=Plus/Minus
Query 113 CCCATACCATGCTCTCTTTCGCTCTGTTTCATCTTCATGGAACAAAACCATCACAAACCC 172
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CCCATACCATGCTCTATATCGCTCTGTTTCATCTTCATGGAACAAAACCATCACAAACCC 654
Query 173 TAGATTCCTCCTCTCCAAGCAATCTCTTTCTATCTCTTCTCCTTACCTATTTGTCTTCGC 232
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TAGATTCCTCTTCTCCAAGCAATCTCTTTCTATCTCTTCTCCTTACCTATTTGTCTTCGC 594
Query 233 TTTCAACAAATCAACGGCTAAGATTCAATGGCAATCCCTCGACCTCGCATCTGGCCGTTG 292
|||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||
Sbjct 593 TTTCAACAAATCAACGGCTAGGATTCAATGGCAATCCCTTGACCTTGCATCTGGCCGTTG 534
Query 293 GTTTGTCTTACCTCCCATGCCAAACTCTTTCAACC-AAATCTCGTCTCCTCACGCGCTCT 351
|||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 533 GTTTGTTTTACCTCCCATGCCAAACTCTTTC-ACCAAAATCTCGTCTCCTCACGCACTCT 475
Query 352 CATGCGCGTCGAGT-CCACGTCAGGGGAAGCTTTTCGTCCTCGGCGGCGGAGACT-TAAA 409
|||||||||||| | |||||||||||||||||||| || |||||||||||||| | ||||
Sbjct 474 CATGCGCGTCGA-TGCCACGTCAGGGGAAGCTTTTTGTACTCGGCGGCGGAGA-TGTAAA 417
Query 410 CCGCTCCGCCGTTGTTTACACGGCTTTAACGAATCGTTGGTCGTGTATTTCTCCGATGAT 469
|||||||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||
Sbjct 416 CCGCTCCGCCGTCGTTTACACTGCTCTAACGAATCGTTGGTCGTGTATATCTCCGATGAT 357
Query 470 GAGTCCGAGAACTTACTTTAACGCCGGGAATGTTAACGGCAAAATCATGGCCGTTGGTGG 529
||| |||||||| ||||| | |||||||||||||||| ||||||||||||||||||||
Sbjct 356 GAGCCCGAGAACGTACTTCGTCTCCGGGAATGTTAACGGTAAAATCATGGCCGTTGGTGG 297
Query 530 GAGTGTGGGCGGAAACGGAGAAGCGACGACGGAAGTTGAATCGTACGATCCAGAGAATGA 589
|||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||
Sbjct 296 GAGTGTGGGCGGAAACGGAGAAGCAACTACGGAAGTTGAATCGTATGATCCAGATAATGA 237
Query 590 CACGTGGACGGCTGTGAAGAAACTGCCGATGGTGTTGGCGAAGTATGACTCAGCCGTGAT 649
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 236 CACGTGGACGGTTGTGAAGAAGTTGCCGATGGTGTTGGCGAAGTATGACTCAGCCGTGAT 177
Query 650 CGGGAAAAAGATGTGTGTGACAGAAGGATGGGCGTGGCCGTTCATGTTTTCACCGATGGG 709
||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 176 CGGGAAAGAGATGTGTGTAACAGAAGGATGGGCGTGGCCGTTCATGTTTCCACCGATGGG 117
Query 710 ACAAGTGTACGACTCAGATGAAGACACGTGGCGAGAGATGAGCGGTGGGATGAAAGAAGG 769
||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 116 ACAAGTGTACGACTCCGACGAAGGCACGTGGCGAGAGATGAGCGGTGGGATGAAAGAAGG 57
Query 770 GTGGACGGGTGTGAGCGTCGTGATCCGCGACAGGTTGTTTGTGATCTCCGAGCA 823
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 56 GTGGACGGGTGTGAGCGTCGTGATCCGCGACAGGCTGTTTGTGATCTCGGAGCA 3
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5