BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481313
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24570.1 | Symbols: WRKY17, ATWRKY17 | WRKY DNA-binding prot... 1847 0.0
AT4G31550.1 | Symbols: WRKY11, ATWRKY11 | WRKY DNA-binding prot... 525 4e-148
AT3G58710.1 | Symbols: WRKY69, ATWRKY69 | WRKY DNA-binding prot... 87.9 2e-16
> AT2G24570.1 | Symbols: WRKY17, ATWRKY17 | WRKY DNA-binding protein
17 | chr2:10437398-10439298 REVERSE LENGTH=1320
Length=1320
Score = 1847 bits (1000), Expect = 0.0
Identities = 1214/1313 (92%), Gaps = 32/1313 (2%)
Strand=Plus/Plus
Query 1 TTTCGCTCTCTCATTCATC-ACAAAAACTT-CACATTTTCTCAGATCTTCAA-------- 50
||||||||||||||||||| | |||||||| ||||| |||||||||||||||
Sbjct 3 TTTCGCTCTCTCATTCATCAAAAAAAACTTGCACATCTTCTCAGATCTTCAAGTTTCTCC 62
Query 51 TCT--TTTCTCATCATGACCGTGGATATCATGCGCTTACCGAAGATGGAAGATCAAACGG 108
||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||
Sbjct 63 TCTGGTTTCTCATCATGACCGTTGATATTATGCGTTTACCTAAGATGGAAGATCAAACGG 122
Query 109 CTATACAAGAAGCTGCATCACAAGGCTTAAAAAGCATGGAACACTTGATTCATGTCCTCT 168
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 123 CTATACAAGAAGCTGCATCACAAGGCTTAAAAAGCATGGAACACTTGATTCGTGTCCTCT 182
Query 169 CTAACCGTCCTGAAGAACGTCACGTTGATTGTTCTGAAATCACCGATTTCACAGTTTCTA 228
|||||||||| ||||||||| |||||||||| ||||| ||||| ||||||||||||||||
Sbjct 183 CTAACCGTCCCGAAGAACGTAACGTTGATTGCTCTGAGATCACTGATTTCACAGTTTCTA 242
Query 229 AGTTCAAGAAAGTCATCTCTCTTCTTAACCGAACCGGTCACGCCCGGTTTCGACGTGGAC 288
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 243 AGTTCAAGAAAGTTATCTCTCTTCTTAACCGTTCCGGTCACGCCCGGTTTAGACGTGGTC 302
Query 289 CGGTTCATtcccctcctccttcatcctcctcctccattcctccACCGGTGAAAGTTACAC 348
||||||||| || ||| | | | ||||||||| ||||||||||||||||||| |||
Sbjct 303 CGGTTCATT--CC-CCT-C--C-T--TCCTCCTCCGTTCCTCCACCGGTGAAAGTGACAA 353
Query 349 CTCCGGCTCCAACTCAGATCTCTGCTCCGGCACCGGTTAGCTTCGTTCAGTCAAATCAAC 408
|||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 354 CTCCGGCTCCCACTCAGATCTCTGCTCCAGCACCGGTTAGCTTCGTTCAGGCAAATCAAC 413
Query 409 AAAGCGTGACGTTAGATTTCACTAGACCAAGCGTGTTTGGCGCTAAAACCAAGAGCTCCG 468
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 414 AAAGCGTGACGTTAGATTTCACTAGACCGAGCGTTTTTGGCGCTAAAACCAAGAGCTCGG 473
Query 469 AGGTTGTTGAGTTCGCTAAGGAGAGTTTTAGCGTATCTTCTAACTCTTCTTTCATGTCTT 528
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 474 AGGTTGTTGAGTTTGCTAAAGAGAGCTTTAGCGTATCTTCTAACTCTTCTTTCATGTCTT 533
Query 529 CGGCGATCACCGGTGACGGAAGCGTCTCTAAAGGATCTTCTATCTTTCTTGCTCCGGCTC 588
| |||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 534 CTGCGATCACCGGTGATGGAAGTGTCTCTAAAGGCTCTTCGATCTTTCTTGCTCCGGCTC 593
Query 589 CGGCGGTTCCATTGAATTCCTCCGGGAAACCGCCGCTCTCTGGTCTTCCTTACAGAAAGA 648
| ||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 594 CAGCGGTGCCAGTGACTTCCTCCGGGAAACCGCCGCTTTCTGGTCTTCCTTACAGGAAGA 653
Query 649 GATGCTTTGAACATGACCACTCCG-AGGACTTTTCCGGCAAGATCTCTGGCTCCGGCAAC 707
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 654 GATGCTTTGAACATGACCACTCTGAAGG-CTTTTCCGGCAAGATCTCTGGCTCCGGCAAC 712
Query 708 GGCAAGTGCCACTGCAAGAAAAGCCGGAAAAATCGGATGAAGAGAACCGTGAGAGTACCG 767
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 713 GGCAAGTGCCATTGCAAGAAAAGCCGAAAAAATCGGATGAAGAGAACCGTGAGAGTACCG 772
Query 768 GCGATAAGTGCAAAGATCGCCGATATACCACCAGACGAATATTCATGGAGGAAGTACGGA 827
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 773 GCGGTAAGTGCAAAGATCGCCGATATACCACCAGACGAATATTCATGGAGAAAGTATGGA 832
Query 828 CAAAAACCGATCAAAGGCTCACCACATCCACGAGGTTATTACAAGTGTAGTACATTCAGA 887
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 833 CAAAAACCGATCAAAGGCTCACCACATCCACGGGGTTATTACAAGTGTAGTACATTTAGA 892
Query 888 GGATGTCCAGCGAGGAAACACGTGGAACGAGCTTTGGATGATTCAACGATGCTGATTGTG 947
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 893 GGATGTCCAGCGAGGAAACACGTGGAAAGAGCTTTGGATGATTCAACGATGTTGATTGTG 952
Query 948 ACTTACGAAGGGGAACACCGTCACCACCAGTCCGCGATGCAGGAGAATATAACTCCTAGC 1007
|| |||||||| || |||||||| ||||||||| ||||||||||| || |||||||||||
Sbjct 953 ACGTACGAAGGAGAGCACCGTCATCACCAGTCCACGATGCAGGAGCATGTAACTCCTAGC 1012
Query 1008 GTGAGTGGTTTGGTGTTTGGTTCTACTTGAAGAATTAATTAGTTTGGTAGGTTTTGTAAT 1067
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1013 GTGAGTGGTTTGGTGTTTGGTTCGGCTTGAAGAATTAATTAGTTTGGTA-GTTTTGTAAT 1071
Query 1068 ATTTTGAGAAATAGAGGGGTTGATTTTGTAATATCTTCTTTCTTCTA-AACAAAATTAGT 1126
|||||||||||||||||||||| |||||| | || || ||| ||||| ||||||||||||
Sbjct 1072 ATTTTGAGAAATAGAGGGGTTGGTTTTGT-A-AT-TT-TTT-TTCTATAACAAAATTAGT 1126
Query 1127 TTTAGA-ttttttttATTAGTCTTTTGAATGGATTTTAATCTTACTACCGAGAAAGAAAA 1185
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TTTAGATTTTTTTTTAGTAGTCTTTTGAATGGATTTTAATCTTACTACCGAGAAAGAAAA 1186
Query 1186 AATTCTTACTACATTTTCATAATTTCTTGTGTGATATATTTAGCGGTGTCATGTaaaaaa 1245
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||
Sbjct 1187 AATTCTTACTACATTTTCATAATTTCTTGTTTGATATATTTAGTGGTGTCATGTAAGAAA 1246
Query 1246 aTGATGTTTAGCGAAGTAATTGGCATATAAATGTGTAGGTATATGTATATTAA 1298
|||||||||||| |||||||||| ||||||||||||||| |||||||| ||||
Sbjct 1247 ATGATGTTTAGCAAAGTAATTGGTATATAAATGTGTAGGCATATGTAT-TTAA 1298
> AT4G31550.1 | Symbols: WRKY11, ATWRKY11 | WRKY DNA-binding protein
11 | chr4:15289947-15291539 REVERSE LENGTH=1177
Length=1177
Score = 525 bits (284), Expect = 4e-148
Identities = 486/582 (84%), Gaps = 20/582 (3%)
Strand=Plus/Plus
Query 423 GATTTCACTAGACCAAGCGTGTTTGGCGCTAAAACCAAGAGCTCCGAGGTTGTTGAGTTC 482
|||||| ||| ||||||| | || ||| | ||| | |||||| |||| | || || |||
Sbjct 448 GATTTCTCTAAACCAAGCATCTTCGGCACCAAAGCTAAGAGCGCCGA-GCTG--GAATTC 504
Query 483 GCTAAGGAGAGTTTTAGCGTATCTTCT-AACTCTTCTTTCATGTCTTCGGCGATCACCGG 541
| || || | || || || |||| | ||||| || |||||||| |||||||| |||||
Sbjct 505 TCCAAAGAAAACTTCAGTGTTTCTT-TAAACTCCTCATTCATGTCGTCGGCGATAACCGG 563
Query 542 TGACGGAAGCGTCTCTAAAGGATCTTCTATCTTTCTTGCTCCGGCTCCG--GCGGTTCCA 599
||||| |||||||| || ||| ||||| |||||| | |||||| || | ||
Sbjct 564 AGACGGCAGCGTCTCCAATGGA---AAAATCTTCCTTGCTTCTGCTCCGTTGCAG--CC- 617
Query 600 T-TGAATTCCTCCGGGAAACCGCCGCTCTCTGGTCTTCCTTACAGAAAGAGATGCT-TTG 657
| | || || ||||| ||||| ||| | |||||| |||||||||||||||||| | | |
Sbjct 618 TGTTAACTCTTCCGGAAAACCACCGTTGGCTGGTCATCCTTACAGAAAGAGATG-TCTCG 676
Query 658 AACATGACCACTCCGAGGACTTT-TCCGGCAAGA-TCTCTGGCTCCGGCAACGGCAAGTG 715
| ||||| ||||| || || ||| ||||| || | |||| ||||||| | |||| |||||
Sbjct 677 AGCATGAGCACTCAGA-GAGTTTCTCCGG-AAAAGTCTCCGGCTCCGCCTACGGAAAGTG 734
Query 716 CCACTGCAAGAAAAGCCGGAAAAATCGGATGAAGAGAACCGTGAGAGTACCGGCGATAAG 775
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CCATTGCAAGAAAAGCAGGAAAAATCGGATGAAGAGAACCGTGAGAGTACCGGCGATAAG 794
Query 776 TGCAAAGATCGCCGATATACCACCAGACGAATATTCATGGAGGAAGTACGGACAAAAACC 835
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 795 TGCAAAGATCGCCGATATTCCACCGGACGAATATTCGTGGAGGAAGTACGGACAAAAACC 854
Query 836 GATCAAAGGCTCACCACATCCACGAGGTTATTACAAGTGTAGTACATTCAGAGGATGTCC 895
|||||| ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 855 GATCAAGGGCTCACCACACCCACGTGGTTACTACAAGTGCAGTACATTCAGAGGATGTCC 914
Query 896 AGCGAGGAAACACGTGGAACGAGCTTTGGATGATTCAACGATGCTGATTGTGACTTACGA 955
|||||||||||||||||||||||| || |||||| || ||||||| |||||||| |||||
Sbjct 915 AGCGAGGAAACACGTGGAACGAGCATTAGATGATCCAGCGATGCTTATTGTGACATACGA 974
Query 956 AGGGGAACACCGTCACCACCAGTCCGCGATGCAGGAGAATAT 997
||| || |||||||| |||| ||||||||||||||||||||
Sbjct 975 AGGAGAGCACCGTCATAACCAATCCGCGATGCAGGAGAATAT 1016
> AT3G58710.1 | Symbols: WRKY69, ATWRKY69 | WRKY DNA-binding protein
69 | chr3:21715007-21716916 FORWARD LENGTH=1154
Length=1154
Score = 87.9 bits (47), Expect = 2e-16
Identities = 87/105 (83%), Gaps = 8/105 (8%)
Strand=Plus/Plus
Query 813 TGGAGGAAGTACGGACAAAAACCGATCAAAGGCTCACCACATCC-ACGAGGTTATTACA- 870
||||| ||||||||||||||||||||||||||||| || |||| | | || |||||||
Sbjct 411 TGGAGAAAGTACGGACAAAAACCGATCAAAGGCTCGCCTTATCCCAGG-GGATATTACAG 469
Query 871 AGTGTAGTA-CATTCAGA-GGATGTCCAGCGAGGAAACACGTGGA 913
| ||||||| | | || | |||||||| |||||||| || |||||
Sbjct 470 A-TGTAGTAGC-T-CAAAAGGATGTCCGGCGAGGAAGCAGGTGGA 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63855093240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5