BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481343
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24830.1 | Symbols: | zinc finger (CCCH-type) family protei... 2566 0.0
AT2G24820.1 | Symbols: TIC55-II | translocon at the inner envel... 132 1e-29
> AT2G24830.1 | Symbols: | zinc finger (CCCH-type) family protein
/ D111/G-patch domain-containing protein | chr2:10576856-10579230
REVERSE LENGTH=1707
Length=1707
Score = 2566 bits (1389), Expect = 0.0
Identities = 1593/1691 (94%), Gaps = 15/1691 (1%)
Strand=Plus/Plus
Query 28 ttttcttcttcctctctcgtcttctcctcctccGCGGGAGACTCTAGAATCATCTTCCCA 87
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 19 TTTTCTTCTTCCTCTCTCGTCTTCT-CTCCTCCGCGGGAGACTCTAAAATCATCTTCCCA 77
Query 88 TGGCGAGCGAAGAAAACAAAGCCCTTGAAGATCTTCTTGACATTCAGCTAAATGAACAAA 147
||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||||
Sbjct 78 TGGCGAGCGAAGAAAACAACGACCTTGAAAATCTTCTTGACATTCAGCTAATTGAACAAA 137
Query 148 AAGAATCTCTTTCGGCCATTGACGAAGCCCTAATCTCTGACCCATCTAATCCCGAACTCC 207
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 138 AAGAATCTCTTTCCTCCATTGACGAAGCCCTACTCTCTGACCCATCTAATCCCGAACTCC 197
Query 208 TCTCGGTCCATGAAGAACTTATTTTTGCAATCAAAGAGGTAGAGGAAGGGCTTTTGCACT 267
|||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
Sbjct 198 TCTCGGTCCATGAAGAACTTCTCAGTGCAATCAAGGAGGTAGAGGAAGGGCTTTTGCATT 257
Query 268 TAAAACGAGCTCGGTTATTGCAAGAAGCTGATATAGTGTTGAATGGTCTAAATCATGATG 327
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 258 TAAAACGAGCTCGGTTATTGGAGGAAGCTGATATAGTGTTGAATGGTCTAAATCATGATG 317
Query 328 CTGGAGTT-AA----AG-ATTTGGATG-AATTG-GAGC--CAGAGAAAAAGGATTTGGAT 377
|||||||| || || || |||| | | | | | |||||||||||||||||||
Sbjct 318 CTGGAGTTAAACCTGAGCATCTGGA-GCCAGAGAAAACTGAAGAGAAAAAGGATTTGGAT 376
Query 378 GGATCGAAATGTAGGTTTCGACATACCGATGGTCGTTGGTATAATGGTCGTATTATTGGA 437
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 377 GGATCGAAATGTCGGTTTCGACATACTGATGGTCGTTGGTATAATGGTCGTATTATTGGA 436
Query 438 TTTGAAGGTTCTGATTCTGCTAAGATCTCTTTCCTTACACCCACATCCGAGAGTATGATG 497
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 437 TTTGAAGGCTCTGATTCTGCTAAGATCTCTTTCCTTACACCCACATCTGAGAGTATGATG 496
Query 498 ATTTGCAAGTTTTTCACGCAGCAGAGGTGTCGGTATGGCAGTTCCTGTCGTTCATCACAT 557
|||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 497 ATTTGCAAGTTTTTTATGCAGCAGAGGTGTCGGTTTGGCAGTTCTTGTCGTTCATCACAT 556
Query 558 GGACTAGATGTGCCGATATCTTCTCTGAAGAACTATGAACAGACTAAGTGGAAGCAATCG 617
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 557 GGACTAGATGTGCCGATATCTTCTCTGAAGAACTATGAACAGACTGAGTGGAAGCAATTG 616
Query 618 ATGGTAGGCTCCAAAATTTGGGCAGTTTCTGGCAGTAAATACGATATATGGAGAAAGGCT 677
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 617 ATGGTAGGCTCTAAGATTTGGGCGGTTTCTGGCAGTAAATACGATATATGGAGAAAGGCT 676
Query 678 GAACTTGAATCATGGGATGATGAGTTACAAGTAGGCGGAGTTGTTTTCAGAGATGATAGA 737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 677 GAACTTGAATCATGGGATGATGAGTTACAAGTAGGCGGAGTTGTTTTCAGAGATGATAAA 736
Query 738 AGCTCCGCAAAGCTAGGATCTGATGCTTTGGCATTATCCGAGTTCGCTCAGATGACTGAT 797
||||| |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct 737 AGCTCTGCAAAGCTAGGATCTGATTCTTTGGCATTATCAGAGTACGCTCAGATGACTGAT 796
Query 798 GATGATGGGGAAGAGGAGGACGAGGAGGATGAAGAACTGAGTGCTTCAGATACTGAAGAT 857
|||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||
Sbjct 797 GATGATGGGGAAGAGGAGGAGGAGGAGGATGAACAACAGAGTGCTTCAGATTCTGAAGAT 856
Query 858 TCTGTTTCAAGTGATTATGATGAAGAGTCTCCACAAGGCATAGGTTTTCTAGAAAGCACA 917
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 857 TCTGTTTCAAGTGATTATGATGAAGGGTCTCCACAAGGCATAGGCTTTCTAGAAAGCACA 916
Query 918 AATCTACCAAGAGGCGTCCAAACTGACACCGCCTTATTTGCTAAGTGGGAGAATCACACT 977
|||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 917 AATCTACCAAGAGGTGTCCAAACTGACACTGCCTTATTTGCTAAATGGGAGAATCATACT 976
Query 978 AGAGGAATAGCTTCGAAGATGATGGCAAGTATGGGTTACCGTGAAGGGATGGGTCTTGGT 1037
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 AGAGGAATAGCTTCGAAGATGATGGCAAGTATGGGTTACCGTGAAGGGATGGGTCTTGGC 1036
Query 1038 GTCTCTGGCCAAGGGATATTAAATCCCATCTTAGTAAAAGTACTTCCTGCAAAGCGGTCA 1097
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1037 GTCTCTGGCCAAGGGATATTAAATCCAATCTTAGTAAAAGTACTTCCAGCAAAGCGGTCA 1096
Query 1098 CTGGATTATGCTCTTGAGCACATTAGGAATGGAGAATGTAAAAGCGAGAAACAAAAGAAG 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 CTGGATTATGCTCTTGAGCACATTAGGAATGGAGAATGTAAAAGCGAGAAACAAAAGAAG 1156
Query 1158 AAAAGGAGCAGAGGTGGCAAAAGGAAGCGTGGGAAGAAGTTTGCAGAAGCAGCTAAAGCA 1217
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 AAAAGGAGCAGAGGTGGGAAAAGGAAGCGTGGGAAGAAGTTTGCAGAAGCAGCTAAAGCA 1216
Query 1218 GCAAAACAGGAAGAGGAATCGAAGCCAGATTTGTTTAGCTTAATCAACGAACAAATTTTT 1277
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1217 GCGAAACAGGAAGAGGAATCGAAGCCAGATTTGTTTAGCTTAATCAATGAACAAATTTTT 1276
Query 1278 CCTACGCACCATGTGAAAGTAAACAGCATAGAGTCTGTAAAAAAGAGGGAAAACAAAGGT 1337
||||| | ||||| ||||||| ||||| |||||||||||||| ||| |||||||||||
Sbjct 1277 CCTACCCGCCATGAGAAAGTACACAGC---GAGTCTGTAAAAAATAGGCAAAACAAAGGT 1333
Query 1338 CCAGTAGACAGGAAAGATTTGGTTGCATACCAAGACGAAGTCAAAGACTTGAAGTTAGAA 1397
|||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 1334 CCAGTAGACAGGAAAGCTTTGGTTGAATACCAAGATGAAGTCAGAGACTTGAAGTTAGAA 1393
Query 1398 ATGATGAAACTAGAACAGATGGTGAACAGAAACAAGAAAGATCAAGTTGTTTCAGAGGCT 1457
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1394 ATGTTGAAACTAGAACAGATGGTGAACAGAAACAAGAAAGATCTAGTTGTTTCAGAGGCT 1453
Query 1458 GCGACGAGAAGATTGAAAGAAGTCCGAAAGGCATTGGCAAATACATTAGCATCTCAAGAA 1517
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 1454 GCGACGAGAAGATTGAAAGAAGTCCGAAAGGCATTGGCAAGTACATTAGCATGTCAAGCA 1513
Query 1518 GCTGCCTCAAATGCTGTAGTAAGCAAAGAGAAAGAGAAGAAATGGCTCAAGTTTTAGAAC 1577
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1514 GCTGCCTCAAATGCTATAGTAAGCAAAGAGAATGAGAAGAAATGGCTCAAGTTTTAGAAC 1573
Query 1578 ATAGAACCTTATTTCAGTTTAACAGAAATTCCATCGTTAAACTGTAAGATTGATGGCAAA 1637
||||||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1574 ATAGAACTTTAAACCAGTTTAACAGAAATTTCATGGTTAAACTGTAAGATTGATGGCAAA 1633
Query 1638 CACTGGAACCTTCTGAATTATATAATTGCGTTTACAAGCaaaaaaaTATTTCATGAAATA 1697
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1634 CATTGGAACCTTCTGAATTATATAATTGCGTTTACAAGCAAAAATTTATTTCATGAAATA 1693
Query 1698 CATATTGTTGG 1708
|||||||||||
Sbjct 1694 CATATTGTTGG 1704
> AT2G24820.1 | Symbols: TIC55-II | translocon at the inner envelope
membrane of chloroplasts 55-II | chr2:10574979-10576938
FORWARD LENGTH=1788
Length=1788
Score = 132 bits (71), Expect = 1e-29
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 1629 GATGGCAAACACTGGAACCTTCTGAATTATATAATTGCGTTTACAAGCaaaaaaaTATTT 1688
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1788 GATGGCAAACATTGGAACCTTCTGAATTATATAATTGCGTTTACAAGCAAAAATTTATTT 1729
Query 1689 CATGAAATACATATTGTTGG 1708
||||||||||||||||||||
Sbjct 1728 CATGAAATACATATTGTTGG 1709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84437316690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5