BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481373
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25150.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2170 0.0
> AT2G25150.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr2:10702363-10704294 REVERSE LENGTH=1633
Length=1633
Score = 2170 bits (1175), Expect = 0.0
Identities = 1333/1410 (95%), Gaps = 7/1410 (0%)
Strand=Plus/Plus
Query 1 ATTCTAACATTGGTAAGAGATGTCAAACCAAAGAAAACCAATCCTTCCTCTATTACTTGA 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 10 ATTCTAACATTGGTAAGAGATGGCAAACCAAAGAAAACCAATCCTTCCTCTATTACTTGA 69
Query 61 AAAGAAACCAGTTGAGCTTGTTAAACCCGCAAAACACACTTCTTGTGATGAAACTCTCTC 120
|||||||||||||||||||||||||||| |||||||||| || | || ||||||||| ||
Sbjct 70 AAAGAAACCAGTTGAGCTTGTTAAACCCTCAAAACACAC-TCAT-TG-TGAAACTCTTTC 126
Query 121 CCTCTCCACTTTAGACAACGATCTTTTCAATGAAGTTATGTACGCAACGATCTACGTTTT 180
||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 127 CCTCTCCACTTTAGACAACGATCCTTTCAATGAAGTTATGTATGCAACGATTTACGTTTT 186
Query 181 CAAAGCAAACCAAAAGAAGCTAAATGATCCTGTCTCTTTGCTTAGGAAGGCTTTGTCCGA 240
|||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 187 CAAAGCCAATGGAAAGAACCTAGATGATCCTGTCTCTTTGCTTAGGAAGGCTTTGTCCGA 246
Query 241 ACTTCTTGTGCATTACTATCCC-CTTTCAGGCAAGCTAATGAGAAGTGAGAGTAGTGGTA 299
|||||||||||||||||| ||| ||||| |||||||| |||||||||||||||| ||| |
Sbjct 247 ACTTCTTGTGCATTACTA-CCCTCTTTCGGGCAAGCTGATGAGAAGTGAGAGTAATGGAA 305
Query 300 AGCTTCAATTGGTTTATCTAGGTGAGGGAGTTCCATTTGAAGTCGCTACATCAACTCTAG 359
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 306 AGCTCCAGTTGGTTTATCTGGGTGAGGGAGTTCCATTTGAAGTCGCTACATCAACTCTAG 365
Query 360 ACCTCTCCTCTCTAAACTATATAGAAAACCTCGATGACCAAGTTGCATTGCGGCTTGTTC 419
||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 366 ACCTCTCCTCTCTGAACTATATCGAAAACCTCGATGACCAAGTTGCTTTGCGGCTTGTAC 425
Query 420 CTGATATCGAAATCGACTACGAGAGCAACGTTTCTTATCACCCTCTAGCTTTGCAGGTTA 479
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 426 CTGAAATCGAAATCGACTACGAGAGCAACGTTTGTTATCACCCTCTAGCTTTGCAGGTTA 485
Query 480 CCAAGTTTGCCTGTGGAGGATTCACCATTGGCACCGCATTGACGCACGCTGTGTGTGACG 539
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 486 CCAAGTTTGCCTGTGGAGGATTCACCATTGGCACCGCATTGACACACGCTGTGTGTGATG 545
Query 540 GATACGGTGTGGCTCAGATCATCCATGCCTTGACCGAGTTGGCTGCCGGAAAGACCGAGC 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 546 GATACGGTGTGGCTCAGATCATCCATGCCTTGACCGAGTTGGCTGCAGGAAAGACTGAGC 605
Query 600 CATCGGTGAAGCCAGTGTGGCAGAGAGAGCGGCTTGTCGGAAAAATTGACGATAAACCAG 659
||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 606 CATCGGTGAAGTCAGTGTGGCAGAGAGAGCGGCTGGTCGGAAAAATTGACAATAAACCAG 665
Query 660 GCAAAGTGCCCGGCAGCCACATTGATGGTCTTTTGGCCACCTCACCATATTTGCCAACTA 719
||||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||
Sbjct 666 GCAAAGTGCCCGGTAGCCATATTGATGGTTTTTTGGCCACCTCAGCATATTTGCCAACTA 725
Query 720 CTGATGTCGTCACGGAGATAATAAACATTCCCGCTGGAGATATTAAAAGGCTTAAAGACT 779
||||||||||||| |||| ||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 726 CTGATGTCGTCACAGAGACAATAAACATTCGTGCTGGGGATATAAAAAGGCTTAAAGACT 785
Query 780 CTTTGATGAGGGAATGTGATTACCTTAAAGAGAGTTTCACTACTTATGAAGTACTTAGTT 839
|| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 786 CTATGATGAAAGAATGTGAGTACCTTAAAGAGAGTTTCACTACTTATGAAGTACTTAGTT 845
Query 840 CTTACGTATGGAAATTAAGATCTCGAGCTCTAAAACTAAACCCTGACGGGATCACTGTCC 899
| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 846 CATACATATGGAAATTAAGATCTCGAGCCCTAAAACTAAACCCTGACGGGATCACTGTCC 905
Query 900 TTGGCGTGGCTGTTGGAATCCGACATGTTTTGGACCCACCACTTCCTAAAGGATACTACG 959
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TCGGCGTGGCTGTTGGAATCCGACATGTTTTGGACCCACCACTTCCTAAAGGATACTACG 965
Query 960 GTAACGCGTACATAGACGTCTACGTGGAGCTAACTGTGAGAGAACTCCAAGAATCATCAA 1019
||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 966 GTAACGCTTACATAGACGTCTACGTCGAGCTAACTGTGAGAGAACTCGAAGAATCATCAA 1025
Query 1020 TCTTTAACATCGCGAGTCGTGTGAAGAAAGCGAAGAAAACAGCCTATGAAAAGGGGTATA 1079
||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1026 TCTCTAACATCGCGAATCGTGTGAAGAAAGCCAAGAAAACAGCCTATGAAAAAGGGTATA 1085
Query 1080 TCGAGGAAGAGCTAACGAACACGGAGAGATTGATGAGGGATGATGCGATGTTCGAAGGGG 1139
||||||||||||||| ||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 1086 TCGAGGAAGAGCTAAAGAACACGGAGAGATTGATGAGAGATGATTCAATGTTCGAAGGGG 1145
Query 1140 TAAGCGATGGATTGTTTTTCTTGACGGATTGGAGGAATATTGGTTGGTTCGGATCGATGG 1199
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1146 TAAGCGATGGATTATTTTTCTTGACGGATTGGAGGAATATTGGTTGGTTCGGATCAATGG 1205
Query 1200 ATTTCGGTTGGAATGAGCCCGTGAATTTACGACCATTGACCCAACGGGAGAGCACAGTGC 1259
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1206 ATTTCGGTTGGAATGAGCCAGTGAATTTACGACCATTGACCCAGCGGGAGAGCACAGTGC 1265
Query 1260 ACGTAGGGATGATCTTGAAACCTTCAAAATTGGATCCATCAATGGAAGGTGGAGTTAAAG 1319
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1266 ACGTAGGGATGATCTTGAAACCTTCAAAATCGGATCCATCAATGGAAGGTGGAGTTAAAG 1325
Query 1320 TGATCATGAAGTTGCCGA-GAGACGCAATGGTTGAATTCAAGCGAGAGATGGCTGCTATG 1378
|||||||||||||||| | ||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1326 TGATCATGAAGTTGCC-ACGAGACGCAATGGTTGAATTCAAGCGTGAGATGGCTACTATG 1384
Query 1379 AACAAACTTTATTTTGGTGATACCAACTAA 1408
|| |||||||||||||||||||||||||||
Sbjct 1385 AAGAAACTTTATTTTGGTGATACCAACTAA 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71385174990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5