BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481487
Length=2261
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26280.1 | Symbols: CID7 | CTC-interacting domain 7 | chr2:1... 3321 0.0
AT2G26270.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 56.5 1e-06
> AT2G26280.1 | Symbols: CID7 | CTC-interacting domain 7 | chr2:11187733-11191337
REVERSE LENGTH=2312
Length=2312
Score = 3321 bits (1798), Expect = 0.0
Identities = 2120/2265 (94%), Gaps = 64/2265 (3%)
Strand=Plus/Plus
Query 34 AAGAAGACGACGCTTAGCCCAAAACTCGAATCCCTAGGTGAAGCAGGGTTTGGTAATATG 93
|||||||||||||||| ||||||||||||||||||| | | ||| ||||||||||||
Sbjct 62 AAGAAGACGACGCTTACCCCAAAACTCGAATCCCTA---G--G-AGGTTTTGGTAATATG 115
Query 94 AATTGAG-AGTCCACGCACGTGTGTATCTCTATTACCGTCAGAGGTTTCAT-TTTTATTA 151
||||||| ||||||||||||||||||||||||||||||||||| ||| | |||| |
Sbjct 116 AATTGAGAAGTCCACGCACGTGTGTATCTCTATTACCGTCAGA--TTT--TGGTTTAAAA 171
Query 152 GTC--TTCTTTTGTCCCA-T-TT-T-AGCAATGAGCTTAACCAAGAAAGCAAGTGATCCA 205
| | || |||| | | | | || | || |||||| ||||| |||||||||||||| |||
Sbjct 172 G-CAGTTATTTT-TACTAGTCTTGTAAG-AATGAGTTTAACAAAGAAAGCAAGTGAACCA 228
Query 206 AAGCTAAGTGGTACTAGTATCAAGCCAACAACTTTGAACCCTCATGCTGCTGAGTTTGTT 265
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 229 AAGCTAAGTGGTACTAGTATCAAGCCAACAACTTTAAACCCTCATGCTGCTGAGTTTGTT 288
Query 266 CCGTTTACTCTACGTTCTCCTTCATCTGGAGGTACAAGCACTTTGGATGCGGCGACATCA 325
|||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 289 CCGTTTACTCTACGTTCTCCTTCATCTGGAGGTACAAGTACTTTGGAT--------A-CA 339
Query 326 AGACTTTTAGCTTCTTCTAGTTCTGTTGGGAAAGCGGTTTTGGACAGGACAGAATCATCT 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 AGACTTTTAGCTTCTTCTAGTTCTGTTGGGAAAGCGGTTTTGGACAGGACAGAATCATCT 399
Query 386 GCATCACATCATTCGGATGAAGAAGCACGTCAGTTCTGGAGTCATCAACTTCCTGATGAT 445
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GCGTCACATCATTCAGATGAAGAAGCACGTCAGTTCTGGAGTCATCAACTTCCTGATGAT 459
Query 446 ATAACTCCAGATTTTGGGTTAATGACTCAAGATGACAATTCTTATGGATCTGGGAGTTTG 505
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 460 ATAACTCCAGATTTTGGGTTGATGACTCAAGATGACAATTCTTATGGATCTGGTAGTTTG 519
Query 506 TCATTAGCTAGCTTGTCGTTGTTTGACGGTAATGAAGCTGAAAAGTTTCCTTCTGCTAGT 565
||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 520 TCACTAGCTAACTTGTCGTTGTTTGACGGTAATGAAGCTGAGAAGTTTCCTTCTGCTAGT 579
Query 566 GGAGGGT-TCGGATTTTCTGACCAAACTGGATTAGCTTCACATAATGCTAATGGTAATAG 624
||||| | | || ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 580 GGAGGATAT-GGCTTTTCAGATCAAACTGGATTAGCTTCACATAATGCTAATGGTAATAG 638
Query 625 CTTGGGAGAGAAGAGTAGATATCCCATTTCTTCATTCGGGGAAGATCCTCAGCGACCGAG 684
||||| || |||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 639 CTTGGCTGATAAGAGTAGATATCCCATTTCTTCATTTGGGGAAGATCCTCAGCGACAGAG 698
Query 685 TTTCATGCATTTGAGTCCAAAGCCTTGGGATAAGCAAATCATGAATGCTGAGCAGCTGCT 744
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 699 TTTCATGCAACTGAGTCCAAAGCCTTGGGATAAGCAAATCATGAATGCTGAGCAGCTTCT 758
Query 745 TGGGAATGACAGGGAAAGAAACCCTTTCAGTGGGAAATCTCGACATGGGTTTGTTAACGA 804
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 759 TGGGAATGACAGGGAAAGAAACCCTTTTAGTGGGAAATCTCGACATGGCTTTGTTAACGA 818
Query 805 AATGATTACTGAGAGTGCAGGGGAAATGGAGGTGAACCCTGTGGATTTTCTTGCTTCTCA 864
||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 819 CATGATTACTGAGAGTCCAGGGGATATGGAGGTGAACCCTGTGGATTTTCTCGCTTCTCA 878
Query 865 GTTCCCTGGATTCGCCGCTGAAAGTCTAGCAGAGGTTTATTTTGCTAATGGGTGTGATTT 924
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 879 GTTCCCCGGATTCGCCGCTGAGAGTCTAGCAGAAGTTTATTTTGCTAATGGGTGTGATTT 938
Query 925 GCAGTTGACAGTTGAGATGCTTACTCAGCTTGAGCTACAAGTGGATGGTGGCTTGAATCA 984
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 GCAGTTGACAATTGAGATGCTTACTCAGCTTGAGCTACAAGTGGATGGTGGCTTGAATCA 998
Query 985 GAACATAAGCCCTAAGAGTTATGCTCCTCCTAGTCTAACTCCCATGGATTTTCCTGCCCT 1044
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 999 AAACATAAGCCCTAAGACTTATGCTCCTCCTAGTCTAACTCCAATGGATTTTCCTGCACT 1058
Query 1045 AAGCATCTCAAATAGCCATGGTATTCCTGCTCAGTTTGGTGGGGATGATTTGCAACAAAC 1104
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1059 AAGCATCTCAAATAGCCATGGTATTCCTGCCCAGTTTGGTGGGGATGATTTGCAACAAAC 1118
Query 1105 TGGAAATCATTACCAATCTCCTGAAAAGGATAACATGTTCTTCTTCAAGTCGGGACCATC 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 TGGAAATCATTACCAATCTCCTGAAAAGGATAACATGTTCTTCTTCAAGTCGGGACCATC 1178
Query 1165 AGTTACTCAGCCCGGTTCAATCGATTATGTTTCTGCTGTCAGGAAGTTAGCATCTCCGGA 1224
||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1179 GGTTTCTCAGCCTGGTGCAATCGATTATGTTTCTGCTGTCAGGAAGTTAGCATCTCAGGA 1238
Query 1225 TTCTGGTATGTGGAAATATGAACGAAACGATTCAGCAGACTCATCTATTGGCTCTAGCAG 1284
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1239 TTCTGGTATGTGGAAATATGAACGAAATGATTCAGCAGACTCATCTATTGGCTCTAGCAG 1298
Query 1285 GAATTCTGGTGCTTACAAAAGTGGCCGTGGGAGGAGTATATATTCTGATAAGCTGCAAAG 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GAATTCTGGTGCTTACAAAAGTGGCCGTGGGAGGAGTATATATTCTGATAAGCTGCAAAG 1358
Query 1345 TCGAGCCCAAACTCGACCTGCTCCTGTCTGGGTGGAGACCGGGGATGCTGTTGGCAATAT 1404
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1359 TCGAGCCCAAACTCGACCTGCTCCTGTTTGGGTGGAGACCGGGGATGCTGTTGGCAATAT 1418
Query 1405 GTATTCTGACTTACGCGAGGAAGCACGTAACTATGCACGTTTGCGGAATGTGTACTTTGA 1464
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1419 GTATTCTGAGTTACGCGAGGAAGCACGTGACTATGCACGTTTGCGGAATGTGTACTTTGA 1478
Query 1465 ACAGGCACGGCAAGCATACCTTGTTGGCAATAAGGCCTTAGCTAAAGAGCTAAGTGTCAA 1524
||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 1479 ACAGGCACGACAAGCATACCTTGTTGGGAATAAGGCCTTAGCCAAAGAGCTAAGTGTTAA 1538
Query 1525 GGGACAGTTGCATAACATGCAAATGAAAGCTGCTCATGGGAAAGCTCAAGAAGCCATTTA 1584
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1539 GGGACAGTTGCATAATATGCAAATGAAGGCTGCTCATGGGAAAGCTCAAGAAGCCATTTA 1598
Query 1585 CCGCCAGAGGAACCCAGTGGGTCAAGGAAACAGTAGAGGGAATGAGAGAATGATAGACTT 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 CCGCCAGAGGAACCCAGTGGGTCAAGGAAACAGTAGAGGGAATGAGAGAATGATAGACTT 1658
Query 1645 GCATGGGTTACATGTGAGTGAAGCTCTTCAGGTGTTGAAGCACGAACTGAGCGTGTTGAG 1704
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1659 GCATGGGTTACATGTGAGTGAAGCACTTCAGGTGTTGAAGCACGAACTGAGTGTGTTGAG 1718
Query 1705 GAGCACAGCTCGAGCAACGCAAGAAAGGCTTCAGGTTTTCATATGTGTAGGGACAGGCCA 1764
|||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||
Sbjct 1719 GAGCACAGCTCGAGCAACGCAAGAGAGGCTTCAGATTTACATATGTGTAGGGACAGGCCA 1778
Query 1765 CCACACAAGGGGTTCCCGCACTCCGGCTAGACTCCCAGTTGCTGTACAGCGCTACCTACT 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 CCACACAAGGGGTTCCCGCACTCCGGCTAGACTCCCAGTTGCTGTACAGCGCTACCTACT 1838
Query 1825 CGAAGAAGAAGGCCTTGACTATTCCGAGCCGCAGGCTGGTCTCCTTAGAGTCATCATATA 1884
|||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1839 CGAAGAAGAAGGTCTTGACTATTCCGAACCACAGGCCGGTCTCCTTAGAGTCATCATATA 1898
Query 1885 CTGACAGACAAAAGCCAGGTACTTATATAGGATACACA-ACCGGaaaagaaaacaaaaaa 1943
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1899 CTGACAGACAAAAGCCAGGTACTTATATAGGATACA-AGACCGGAAAAGAAAACAAAAAA 1957
Query 1944 aaaGACTAAAGGTGACCACGCTATTCATTTGTTGTATCTGATCTGTACATGGGA------ 1997
|| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 AAGGA--AA-GGTGACCACGCTATTCATTTGTTGTATCTGATCTGTACATGGGAAGAGAG 2014
Query 1998 ----------CTAGCTGAAAATGAAGAAGGAAAAATAA--GTGTTAGGAAAGAGATCTGC 2045
||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 2015 GAGAAAGAGACTAGCTGAAAATGAAGAAGGAAAAAAAAAAGTGTTAGGAAAGAGATCCGC 2074
Query 2046 AAGAAGGAAGGAATGAAGGCGTATGTATAAAATGTTTAGGTTTGTTCAGTTAATACTTTT 2105
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2075 AAGAAGGAAGGAACGAAGGCGTATGCATAAAATGTTTAGGTTTGTTCAGTTAATACTTTT 2134
Query 2106 TGTAGCATCAGAGGATCGATC---C-TCTTTCTATCTTTTTGTCGGGATCTATACGATGT 2161
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2135 TGTAGCATCAGAGGATCGATCAGACCTCTTTCTATCTTTTTGTCGGGATCTATACGATGT 2194
Query 2162 TTTGTTGATTCTCTGTACttttttt-----ACAGTTTTACTCTATATGCTATACTCCTTT 2216
||||||||||||| || |||||||| |||||||||||||||||| |||||||||||
Sbjct 2195 TTTGTTGATTCTCGGTGCTTTTTTTTTTTTACAGTTTTACTCTATATGTTATACTCCTTT 2254
Query 2217 CTTCTGGAAATTCTCATATTTGTAATTCTCTTAGATTTAATGTGC 2261
||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2255 CTTCTGGAAATGCTTATATTTGTAATTCTCTTAGATTTAATGTGC 2299
Score = 62.1 bits (33), Expect = 2e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1 GCTCGTGTTACCTCTTTAGCCAAACAACACCCC 33
|||||||||||||||||||||||||||||||||
Sbjct 1 GCTCGTGTTACCTCTTTAGCCAAACAACACCCC 33
> AT2G26270.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.1);
Has 29 Blast hits to 29 proteins in 9 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11184739-11187775
FORWARD LENGTH=1529
Length=1529
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Minus
Query 2232 ATATTTGTAATTCTCTTAGATTTAATGTGC 2261
||||||||||||||||||||||||||||||
Sbjct 1529 ATATTTGTAATTCTCTTAGATTTAATGTGC 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112198218075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5