BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481514
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26540.1 | Symbols: HEMD, UROS, ATUROS, ATDUF3, DUF3 | uropo... 1561 0.0
> AT2G26540.1 | Symbols: HEMD, UROS, ATUROS, ATDUF3, DUF3 | uroporphyrinogen-III
synthase family protein | chr2:11287365-11290360
REVERSE LENGTH=1403
Length=1403
Score = 1561 bits (845), Expect = 0.0
Identities = 979/1043 (94%), Gaps = 12/1043 (1%)
Strand=Plus/Plus
Query 122 ATCTCTAAGCAAACGAGTTTTCGCTTGTCCTGCCCTAATTCGAAATTCAATTTCCCCGTC 181
|||||| ||||||| ||||||||||| |||| ||| |||||||||||||||||| ||||
Sbjct 226 ATCTCTGAGCAAACCAGTTTTCGCTTCTCCTTCCCCAATTCGAAATTCAATTTCTTCGTC 285
Query 182 TC-TCTCTTCATCTTCTTCCTCCGTTAGTAGCTCCAATTCGATTCCTCAGGTCGTCGTAA 240
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 -CGTCTCTTCATCTTCTTCCTCCGTTAGTAGCTCCAATTCGATTCCTCAGGTCGTCGTAA 344
Query 241 CCCGAGAACGAGGCAAGAACAATCAAATCATCAAAGCTTTGGAGAAACAA-GGGATATCA 299
| ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 345 CACGAGAACGAGGCAAGAACAATCAAATCATCAAAGCTTTGGAGAAA-AATGGCATATCA 403
Query 300 TCTTTAGAGCTTCCCTTGATTCAACATGCGCGAGGACCTGATTTCGATCGGCTTGCTTCT 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TCTTTAGAGCTTCCGTTGATTCAACATGCGCGAGGACCTGATTTCGATCGGCTTGCTTCT 463
Query 360 ATATTAAGTGATAAGAGCTTTGACTGGATCATCATAACATCTCCAGAAGCAGGTTCTGTC 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GTATTAAATGATAAGAGCTTTGACTGGATCATCATAACATCTCCAGAAGCAGGTTCTGTT 523
Query 420 TTTCTCGAGGCCTGGAAGGCGGCTAGCTCCCCAAAAGTGCAAATAGGTGTAGTAGGAGCT 479
||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 524 TTTCTCGAGGCGTGGAAGACAGCTAGCTCCCCAGAAGTGCAAATAGGTGTAGTAGGAGCT 583
Query 480 GGAACCGCCAGGGTATTTGAAGAGGCAATGCAATCGGCAGAAGGATTGCTTCATGTTGCA 539
||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 584 GGAACAGCCAGGGTATTTGAAGAGGCAATGAAATCGGCAGATGGATTGCTTCATGTTGCC 643
Query 540 TTTACACCATCAAAAGCAACGGGTAAAGTCTTGGCTTCGGAGCTTCCAGAGAAAGTTGGC 599
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 644 TTTACACCATCAAAAGCAACTGGTAAAGTCTTGGCTTCGGAGCTTCCAGAGAAAGTTGGC 703
Query 600 AAAAGGTCCTCTGTCTTATACCCGGCTTCTCTAAAAGCAGGCAATGATATTGTGGAAGGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 AAAAGGTCCTCTGTCTTATACCCGGCTTCTCTAAAAGCAGGCAATGATATTGTGGAAGGG 763
Query 660 TTGTCCAAACGTGGGTTTGAAGTTGTCAGGCTGAATACATACACAACAGTTCCGGTGCAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TTGTCCAAACGTGGGTTTGAAGTTGTCAGGCTGAATACATACACAACAGTTCCGGTGCAG 823
Query 720 AGTGTTGATACAGTGCTTCTGCAACAGGCAGTGTCTGCTCCTGTTCTTTCTGTAGCTTCA 779
||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 824 AGTGTTGATACGGTGCTCCTGCAACAGGCACTATCTGCTCCTGTTCTTTCTGTAGCTTCT 883
Query 780 CCTTCTGCAGTTCGGGCCTGGCTGAATCTGATTCAAAACGAGGAGCAATGGAGCAATTAC 839
|||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 884 CCTTCTGCAGTTCGCGCCTGGCTGCATCTGATTCAAAATGAGGAGCAATGGAGCAATTAC 943
Query 840 GTTGCCTGCATTGGAGAGACAACTGCTTCAGCTGCAA-AACGTCTAGGACTGAAAAACGT 898
|||||||||||||||||||||||||| |||||||| | || | |||||| ||||||||||
Sbjct 944 GTTGCCTGCATTGGAGAGACAACTGCATCAGCTGCTAGAA-GACTAGGATTGAAAAACGT 1002
Query 899 GTACTACCCAGA-ACAACCAGGACTTGAAGGGTGGGTCGAGAGCATCATGGAAGCTCTAG 957
||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1003 CTACTACCCAGAGA-AACCAGGACTTGAAGGGTGGGTCGAGAGCATAATGGAAGCTCTAG 1061
Query 958 GTGCTCACGAAGATTCAAGAAACTCTAGCGGCAGGAATTGAATCACACTTGTGCCATTCT 1017
||||||||| ||||||||| ||| ||||| ||||||||||||| ||||||||||||| ||
Sbjct 1062 GTGCTCACGCAGATTCAAGTAACCCTAGCAGCAGGAATTGAATTACACTTGTGCCATCCT 1121
Query 1018 CTCATAGATTTTACTC-TGGAGGACTTTGAATTTGGACAGTGCATGTAATTTAGAGGACA 1076
||||||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 1122 CTCATAGATTTTACTTATGGAGGACTTTGAGTTTGGTCAGTGCCTGTAATTTAGAGGACA 1181
Query 1077 TGGAAAAAGAAACCAAATGATTG-TGTTGAGAAA-TACTCAAGCCCTTGTAAGATATCTC 1134
||||||||||| |||||||| | | |||||||| |||| ||||||||||||||||||||
Sbjct 1182 GGGAAAAAGAAAGCAAATGAT-GCTTTTGAGAAAATACTGAAGCCCTTGTAAGATATCTC 1240
Query 1135 AGATAGCTTTTGTAGAACAGTAT 1157
||||||||||||| | |||||||
Sbjct 1241 AGATAGCTTTTGTCGTACAGTAT 1263
Score = 97.1 bits (52), Expect = 3e-19
Identities = 92/109 (84%), Gaps = 11/109 (10%)
Strand=Plus/Plus
Query 2 AAAGCGACGACGATTCCATTTTCACCGGCGCTTCCGTGCGACAACAtctctctctctctA 61
|||||||| ||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 66 AAAGCGACTACGATTCCATTTTCACCGGCGCTTCCGTGAGACAACATCTCTC-CA-TCT- 122
Query 62 CCTCACAGAACTATTTCTAATGGCATTG---CTCCTTTCTCACTGCTCT 107
| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 123 --TG---GAACTTTTTCTAATGGCATTATTACTCCTTTCTCACTGCTCT 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5