BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481556
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26810.1 | Symbols: | Putative methyltransferase family pro... 1247 0.0
> AT2G26810.1 | Symbols: | Putative methyltransferase family protein
| chr2:11433733-11436277 REVERSE LENGTH=1008
Length=1008
Score = 1247 bits (675), Expect = 0.0
Identities = 919/1027 (89%), Gaps = 56/1027 (5%)
Strand=Plus/Plus
Query 1 AGTCATCAACAAGCGCACCTCTCAAACAAAGTAACAAAGAGTAGTCAAAGATGGTCAGTG 60
||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||
Sbjct 21 AGTCATCAACAAGCGCAATTCTCTAACAAAGTAACAAAGAGGAGTCAAAGATGGGCAGTG 80
Query 61 AAAGTGATAAAGTTAGAGAAGCAA---ATCAAGAAG-AG--GAAGAAATAGTCTGCTTGG 114
|||||||||||| ||||||||||| | |||||| || ||||| |||||||||||||
Sbjct 81 AAAGTGATAAAGGTAGAGAAGCAATTGTTGAAGAAGAAGAAGAAGAGATAGTCTGCTTGG 140
Query 115 AGTCTTTCTTCATCAACGATGATTATCAGTTGACGAAATTTACATTTGGGTCTCATGTTC 174
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 141 AGTCTTTCTTCATCAACGATGATTATCAGTTGACGAAGTTTACGTTTGGTTCTCATGTTC 200
Query 175 TTGAGCTCTACTGTCTCCAATCAGCTTCAACTGATTTTGATTTAACAGGGCAGCTCGTTT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 201 TTGAGCTCTACTGTCTCCAATCAGCTTCAACTGATTTTGATTTAACAGGGCAGCTGGTTT 260
Query 235 GGCCTGGTGCGATGCTTATGAACGGTTATCTCTCAGAAAATGCTGACATTCTCCAGGGAT 294
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 261 GGCCTGGTGCGATGCTTATGAATGGTTATCTCTCAGAAAATGCTGACATTCTCCAGGGAT 320
Query 295 GTTCAGTTTTAGAGTTGGGATCTGGCGTTGGTATAACCGGAGTCCTCTGTAGCAAATTTT 354
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 321 GTTCAGTTTTGGAGTTGGGATCTGGCGTTGGTATAACTGGAGTCCTATGTAGCAAATTTT 380
Query 355 GCCGTAAAGTTATTTTTACTGACCATAAC---G-A-TG---AAG-TACTGAAGAAAAACA 405
||||||||||||||||||||||||| ||| | | || ||| |||||||||||||||
Sbjct 381 GCCGTAAAGTTATTTTTACTGACCACAACGATGAAGTGCTCAAGATACTGAAGAAAAACA 440
Query 406 TTGAGCTTCATGGACATTCAAGCGGTCCCAACCCCTCAGCTGAATTAGAGGCTGCAAAGC 465
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 441 TTGACCTTCATGGACATTCAAGTGGTCCCAAACCCTCAGCTGAATTAGAGGCTGCAAAGC 500
Query 466 TAGAGTGGGGAAATAGTGATCATCTAGATGAAATTTTACAGAAACACAATGATGGCTTTG 525
| || ||||||||||||||||| || | | |||||||| |||||||||||||||||||||
Sbjct 501 TTGAATGGGGAAATAGTGATCAGCTTGGTCAAATTTTAAAGAAACACAATGATGGCTTTG 560
Query 526 ATCTTATTCTTGGAGCTGATATCTATATCCTTATGAACGATTTTTTATCTATCCGCTTAC 585
|||||||||||||||||| |||| | || | || || | | |
Sbjct 561 ATCTTATTCTTGGAGCTG------ATAT-C---TG--C------TT-TC-A---G----C 593
Query 586 AATCAAGTGTGCCATTTTTATTTGACAGTGTTGAGCAGCTTCTGCGGATCAGGGGACAAG 645
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AATCAAGTGTGCCATTGCTATTTGACAGTGTTGAGCAGCTTCTGCGGATCAGGGGACAAG 653
Query 646 GAAACTGCAAGTTCATACTAGCATACGTCTCCCGGGCTAGACAGATGGATTCAGCGATCT 705
|||||||||| ||||||||||||||||| || |||||||||||||||||||| || ||||
Sbjct 654 GAAACTGCAAATTCATACTAGCATACGTATCACGGGCTAGACAGATGGATTCTGCAATCT 713
Query 706 TGAGAGAAGGCGATCAGCACGGGATGCTGATGAATGAAGTTTCTGGGACTCGGTGTACGG 765
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 714 TGAGAGAAGGCGCTCAGCACGGGATGCTGATGAATGAAGTTTCTGGGACTCGGTGTACCG 773
Query 766 TAGGAAACTTGGAAGGGGTCATATATGAAATCACTCTTCAATAGAAGAAGAAAGGAATTG 825
|||||||||||||||||||||||||||||||||| |||||| |||||| || |||||||
Sbjct 774 TAGGAAACTTGGAAGGGGTCATATATGAAATCACACTTCAAAAGAAGA-GA--GGAATTG 830
Query 826 TGTTTGAATAATTTATTTCCCTTGAGACCTGAGAATTTTGTACCATTATTTTTATGTTAT 885
|||| || ||| ||| |||| |||| |||| ||||||||||| |||||||||||||||||
Sbjct 831 TGTTCGAGTAACTTAGTTCCTTTGATACCTCAGAATTTTGTAACATTATTTTTATGTTAT 890
Query 886 TTTAGATGCATACATTT--GGTGAATCCTTTACTAAAATTACAGTTCAAAAAGTATACAA 943
|| |||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||
Sbjct 891 TT-AGATGCATACATTTTTGGTGAAACGTTTACTAAAGTTACAGTTCAAAAAGTATACAA 949
Query 944 TGACATTTGTCATTTGTGGATGCTTTGAAGTGAAACTAACATTGTTAGCTGAAAAACTGT 1003
|||||||||| | | ||||||||||||||| | | |||||||||||||||||||||
Sbjct 950 TGACATTTGT-----G-G-ATGCTTTGAAGTGAATCCA-CATTGTTAGCTGAAAAACTGT 1001
Query 1004 TGCAACT 1010
|||||||
Sbjct 1002 TGCAACT 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5