BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481580 Length=1017 Score E Sequences producing significant alignments: (Bits) Value AT2G27020.1 | Symbols: PAG1 | 20S proteasome alpha subunit G1 |... 1659 0.0 > AT2G27020.1 | Symbols: PAG1 | 20S proteasome alpha subunit G1 | chr2:11528348-11530976 REVERSE LENGTH=1035 Length=1035 Score = 1659 bits (898), Expect = 0.0 Identities = 979/1018 (96%), Gaps = 6/1018 (1%) Strand=Plus/Plus Query 1 TCTGGCTTGAGAACAAAGAAAACCCCTTTCTTCGATCTCTGCTTAAATCACTCGAAGAAG 60 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 17 TCTGGCTTGAGAACAAAGAAAACCCCTTTCTTCGATCTCAGCTTAAATCACTCGACGAAG 76 Query 61 AAGAAATCA-CTAAGAGTCACaaaaaaaaaaaGATCGACGAAGATGAGTAGCATTGGAAC 119 ||||||||| |||||||| | ||||||||| ||| | ||||||||||||||||||||| Sbjct 77 AAGAAATCAGAAAAGAGTCAGAGAAAAAAAAA-ATCAAGGAAGATGAGTAGCATTGGAAC 135 Query 120 TGGGTACGATCTCTCCGTCACCACTTTCTCTCCCGATGGCCGTGTTTTCCAGATCGAGTA 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136 TGGGTACGATCTCTCCGTCACCACTTTCTCTCCCGATGGCCGTGTTTTCCAGATCGAGTA 195 Query 180 CGCCGCTAAAGCTGTCGACAACAGTGGGACTGTTGTTGGAATCAAGTGCAAAGACGGGAT 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 196 CGCCGCTAAAGCTGTCGACAACAGTGGGACTGTTGTTGGAATCAAGTGCAAAGATGGGAT 255 Query 240 TGTTATGGGAGTGGAGAAACTTATTGCATCAAAGATGATGTTACCAGGTTCCAACCGGAG 299 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 256 TGTTATGGGAGTTGAGAAACTTATTGCATCAAAGATGATGCTACCAGGTTCCAACAGGAG 315 Query 300 GATCCATTCTGTTCATCGTCATGCTGGCATGGCTGTTGCTGGGCTTGCAGCTGATGGGAG 359 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 AATCCATTCTGTTCATCGTCATGCTGGCATGGCTGTTGCTGGGCTTGCAGCTGATGGGAG 375 Query 360 GCAAATTGTTGCGCGTGCTAAGTCTGAAGCACGAAGCTATGAGAGTGTTTATGGCGATGC 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 376 GCAAATTGTTGCGCGTGCTAAGTCTGAAGCACGAAGCTATGAGAGTGTTTATGGCGATGC 435 Query 420 TGTACCTGTGAAGGAACTTTCTGAGCGTGTTGCAAGTTATGTACATTTATGTACCCTGTA 479 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 436 TGTACCTGTGAAGGAACTTTCTGAGCGTGTTGCAAGTTATGTACATCTGTGTACCCTGTA 495 Query 480 TTGGTGGCTCAGGCCTTTCGGCTGTGGAGTCATTCTTGGAGGTTATGATAGAGATGGACC 539 |||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| Sbjct 496 TTGGTGGCTCAGGCCTTTTGGCTGTGGGGTTATTCTTGGAGGTTATGATAGAGATGGACC 555 Query 540 TCAATTGTACATGATTGAACCATCAGGCATATCATATAGATATTTTGGTGCGGCCATTGG 599 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 556 TCAATTGTACATGATTGAACCATCAGGCATATCATATAGATACTTTGGTGCGGCCATTGG 615 Query 600 CAAAGGAAAGCAAGCGGCTAAAACGGAAATTGAGAAATTGAATTTATCTGAGATGACATG 659 ||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| Sbjct 616 CAAAGGAAAGCAAGCTGCCAAAACGGAAATTGAGAAATTAAATTTATCTGAGATGACATG 675 Query 660 CAAAGAAGGCGTTATCGAGGTGGCGAAAATCATCTACAAGCTACACGATGAAGCCAAAGA 719 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 676 CAAAGAAGGCGTTATCGAGGTGGCGAAAATCATCTACAAGCTACACGATGAAGCCAAGGA 735 Query 720 CAAGGCCTTTGAATTGGAGATGAGTTGGATATGCGAGGAGTCAAAACGAGAGCATCAGAA 779 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 736 CAAGGCTTTTGAATTGGAGATGAGCTGGATATGCGAGGAGTCAAAACGAGAGCATCAGAA 795 Query 780 GGTCCCTGATGATCTTCTGGAAGAAGCAAAGACGGCAGCTAAAACTGCGCTCGAGGAGAT 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 796 GGTCCCTGATGATCTTCTGGAAGAAGCAAAGACGGCAGCTAAAACTGCGCTCGAGGAGAT 855 Query 840 GGATGCTGACTAAAACTGAGGAGTGTGTTGAATTTAGATCTGTTTTAATGCGTCGTTTTG 899 |||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| | Sbjct 856 GGATGCTGACTAAAACTGAGGAGTGTGTTGAATTTAGATCCGTCTTATTGCGTCGTTT-G 914 Query 900 -TGTTTCTTATGTACTCTGAATTGAATTTTGTCTTGGAGGGACAGTTGTTGCAGTGTCTT 958 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 915 ATGTTTCTTATGTACTCTGAATTGAATTTTGTCT-GGAGGGACAGTTGTTGCAGTTTCGC 973 Query 959 ATGAACCATTGGAGTCTTTTATCTTTATTGCTATCAACAGTTGCTACGATAATTCCTT 1016 ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| Sbjct 974 ATGAACCATTGGAGTCTTTTATCTT-ATTGCTATCAACAGTTGCTACGATGACTCCTT 1030 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49832273824 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5