BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481585 Length=1062 Score E Sequences producing significant alignments: (Bits) Value AT1G07700.3 | Symbols: | Thioredoxin superfamily protein | chr... 665 0.0 > AT1G07700.3 | Symbols: | Thioredoxin superfamily protein | chr1:2379647-2381362 FORWARD LENGTH=1539 Length=1539 Score = 665 bits (360), Expect = 0.0 Identities = 450/492 (91%), Gaps = 12/492 (2%) Strand=Plus/Plus Query 496 ATATATCACTGTAGCTCTCTTGGATACTCAGGACTCTCTAGTAGGGGAGG--TATA-ACT 552 |||| ||||||||||| || |||||||||||||||| ||||||||||||| || | ||| Sbjct 708 ATATCTCACTGTAGCTATCATGGATACTCAGGACTCACTAGTAGGGGAGGCATAAACACT 767 Query 553 GTTGGAAACTGTAGATGGGTCTGGCACAGCGGTGGAGTCAGGTTGTCGTTTCCAAGAGTT 612 |||| |||| ||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 768 GTTGAAAACCATAGATGGGTCTGGCACAACAACGGAGTCAGGTTGTCGTTTCCAAGAGCC 827 Query 613 GAGTCTTCATCCATGAGTATAAACATTGCAATGGGTTGTACGTTTCAGCATGGGAGAGCA 672 ||||| | | | ||||||||| | |||||||||||| |||||| ||||| |||| Sbjct 828 GAGTC-T--T-C-----TATAAACATCACTATGGGTTGTACGCTTCAGCGTGGGATAGCA 878 Query 673 AAAAGCTTAAGTCAGGAAAACGTAGTGGAGTTATCTGATGAAAACGATGATCTATGTCCT 732 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 879 AAAAGCTTAAGTCAGGAAAACCTAGTGGAGTTATCTGATGAAAATGATGATCTATGTCCT 938 Query 733 GTGGAGTGTGTCACTGAGTTCAAGACCGATGATGAATTGCTTAGAGTCCTTGAAAAGTCG 792 |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| Sbjct 939 GTGGAGTGTGTCACTGAGTTCAAGACAGATGATGAATTGCTTAGCGTTCTTGAAAAGTCG 998 Query 793 AAAGAAACTAATTCTCTGGTCGTGGTTGATTTTTATCGCACTGCTTGTGGGAGTTGTACA 852 ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| | Sbjct 999 AAAGAAACTAATTCTTTGGTTGTGGTTGATTTTTATCGCACTGCATGTGGGAGTTGTAAA 1058 Query 853 TACATAGAGCAGGGCTTCTCAAAAGTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 912 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1059 TACATAGAGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 1118 Query 913 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1119 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 1178 Query 973 CTCCGTATCAAG 984 |||||||||||| Sbjct 1179 CTCCGTATCAAG 1190 Score = 494 bits (267), Expect = 9e-139 Identities = 433/508 (85%), Gaps = 32/508 (6%) Strand=Plus/Plus Query 3 CAAAAGAACGCAACttttttttttttGGTTTC-ATCCTTTGGGTCCATAGCGTTGACAGG 61 |||||||||||||||||| ||| | ||| ||||||||||||||||| ||||| || Sbjct 95 CAAAAGAACGCAACTTTTATTTCGAAAG-TTCGATCCTTTGGGTCCATAGTATTGAC-GG 152 Query 62 TCCTGTGTAGATTACAAATCTAATTGCTTTAGGGTTTTGTCTTTTTGCCGATTTTGGGGA 121 || ||||||||||| ||| ||||||||| || | |||||||||| |||||||| Sbjct 153 --GTGAGTAGATTACAATTCTGATTGCTTTA-GG----G--TTTTTGCCGA-TTTGGGGA 202 Query 122 TGGTTGATCTTTCAATCGAATCCTTAATCTGA-TTGCTGACATTAGAATGTTCATCCCA- 179 |||||||||||||| | ||||||||||||||| ||||||||||||||| |||||| ||| Sbjct 203 TGGTTGATCTTTCAGTTGAATCCTTAATCTGATTTGCTGACATTAGAAGGTTCATTCCAT 262 Query 180 GTTTTGTCTTAATTCCCATCTAGTTGGTGAAAGGGTTTAGA---T----T--TTGCTTGA 230 ||||||||||||| |||||||||||| ||||||||||||| | | |||||||| Sbjct 263 GTTTTGTCTTAATCCCCATCTAGTTGCCGAAAGGGTTTAGATTTTGGGGTCATTGCTTGA 322 Query 231 AATTTATGCTTCAGATGCGTTGAAGTTGTACTGTTTATAATTCTGTGTTGTACTTGGATT 290 ||||||||||||||||||||||| |||||| ||||| || ||||||||||||| ||||| Sbjct 323 AATTTATGCTTCAGATGCGTTGATCTTGTACCGTTTAGAACTCTGTGTTGTACTCGGATT 382 Query 291 CAAAGTTGTTGCCTTTACATGTCATATATCTGTTTTGGCTATTT-CATGCCTCACCATTG 349 |||||||||| |||||||||||||||| |||||||||| ||||| ||||||||||||||| Sbjct 383 CAAAGTTGTTCCCTTTACATGTCATATCTCTGTTTTGGTTATTTTCATGCCTCACCATTG 442 Query 350 AATCCTTCGTTTCAGGCCAATCAACCATTTACGAGAGCTATCTTTCAGGCCTGAGTTCAC 409 ||| ||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||| Sbjct 443 AATTCTTCGTTTCAGGCCACTCAACCAACTACGAGTGCTATCTTTCACCCCTGAGTTCAC 502 Query 410 TTAAAGGGTCCCTGCTTGATTTGCTTATGAGACTGACTATTGTTTGTGGAGTT-GAATAA 468 | |||| || |||||||| |||||| ||||| || | | | | |||||||||| | ||| Sbjct 503 TGAAAGTGTTCCTGCTTGGTTTGCTGATGAG-CT-A-T-T-GCTTGTGGAGTTAGTTTAA 557 Query 469 -TATCTGCAAATGTCAAGTCTTCTTAAT 495 ||||||||||||||||||||||||||| Sbjct 558 ATATCTGCAAATGTCAAGTCTTCTTAAT 585 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52007764620 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5