BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481612
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52980.1 | Symbols: | CONTAINS InterPro DOMAIN/s: ATPase, v... 976 0.0
> AT5G52980.1 | Symbols: | CONTAINS InterPro DOMAIN/s: ATPase,
vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21482160-21483722
REVERSE LENGTH=918
Length=918
Score = 976 bits (528), Expect = 0.0
Identities = 742/837 (89%), Gaps = 48/837 (6%)
Strand=Plus/Plus
Query 1 TGTTTGGACCCGATTAAAGATGGATCAACCCGACCCAAAAAATGGCTCTGGTCTGATTCT 60
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 62 TGTTTGGACCCGATCAAAGATGGATCAACCCGACCCGAAAAATGGCTCTGGTCTGATTCT 121
Query 61 CTCCGTCACTGAACCGATGCGGTCGTTTCTCGC-CATCGCGTCCGGTGATCTTCGTCTCT 119
||||| |||||||||| |||| ||||||||||| | |||| |||||||||| ||||||||
Sbjct 122 CTCCGCCACTGAACCGCTGCGATCGTTTCTCGCTC-TCGCCTCCGGTGATCGTCGTCTCT 180
Query 120 CCGAGGAACTCAGAGGAATTGCTTCCGATCTTAGCTCGAAGAACAGCGTTTCC-TACAAA 178
|||| || |||||||||||||||||||||||| |||||||||||| | |||| ||||||
Sbjct 181 CCGACGAGCTCAGAGGAATTGCTTCCGATCTTCGCTCGAAGAACA-CCATTCCGTACAAA 239
Query 179 TTGCTCCGCGCTATATGGACCGGATCCGATCCGTTGACGAGACCCGG-TTTATTGGGACT 237
|||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||||||||
Sbjct 240 TTGCTCCGCGCTATATGGACCGGATCCGATCCGTCGACCAGA-CCGGATTTGTTGGGACT 298
Query 238 TTTCTCCGGCTGCGATTTCGTCTTCACCAGTCCCAAACCAAGAGAAAAGAGCGAAGAACT 297
||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 299 TTTCTCCGGCTCCAATTTCGTCTTCACCAGTCCCAAACCCAGAGAAAAGAGCGAAGAACT 358
Query 298 GAAAATGAGATTACTGAAGCTGAAAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGT 357
|||| |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAACTGAGATTAGTGAAGCTCAGAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGT 418
Query 358 TAAAGATATAACACCCAAGAAACAAGTCGAAGAGCCTTTCTCCTCTTACAAAGACCAGCT 417
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 TAAAGATATAACACCAAAGAAACAAGTCGAAGAGCCTTTCTCTTCTTACAAAGACCAGCT 478
Query 418 CGGTTTTGGTTTACACGTGGGTCTTACCATGTTCACTGGATATTTGGTTGGATACGCTTC 477
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGGTTTTGGTTTACATGTTGGTCTTACCATGTTCACTGGATATTTGGTTGGATACGCTTC 538
Query 478 TTTCAGAGCTTTATTCAACCGCAACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACT 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTTCAGAGCTTTATTCAACCGCAACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACT 598
Query 538 AGTTTTGGCGATGCTTGTGGAAACACTTCTGTTTATAATCAAAACGTCGAAAGATGATCA 597
|||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 599 AGTTCTGGCGATGCTTGTGGAAACGCTTCTATTTATAATCAAAACGTCTAAAGATGATCA 658
Query 598 GATCCAGAGCTCTAAATCGTT---T-A---CTC-CG-TCGTTCACTC----C-C---A-C 639
||| ||||||||||||||||| | | ||| | |||||||||| | | | |
Sbjct 659 GATTCAGAGCTCTAAATCGTTCACTCAGAGCTCTCCATCGTTCACTCAGAGCTCTCCATC 718
Query 640 -T--ACT---A--AG-AAGAA---TCAATAGAACTTGGTTTGCGTTCCCTTCCTACTGAG 687
| ||| | | ||||| |||||||||||| |||||| ||| |||||||||||
Sbjct 719 GTTCACTCCCACTACTAAGAAAAATCAATAGAACTTTGTTTGCATTCTTTTCCTACTGAG 778
Query 688 AAA--CGAAAGAGATTTGTAGAGAATTTAGCTTGGTAC-TAGCCTGATTTGAGAAA-TTT 743
||| | || |||||||||||||||||||||||||||| | |||||| || |||| |||
Sbjct 779 AAAAACTAA-GAGATTTGTAGAGAATTTAGCTTGGTACCT-GCCTGAAATG-GAAAATTT 835
Query 744 TTGTACTCATATGAGAAGAAACACAG-A----ATTTAAGTTTTGTTTAAATAAAATT 795
|||||| || | || ||||| |||| | |||||||||||||||||||||||||
Sbjct 836 TTGTACCCAAAAGACAAGAAGCACAATACTGTATTTAAGTTTTGTTTAAATAAAATT 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5