BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481634
Length=1883
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27350.5 | Symbols: | OTU-like cysteine protease family pro... 2806 0.0
> AT2G27350.5 | Symbols: | OTU-like cysteine protease family protein
| chr2:11699549-11704248 REVERSE LENGTH=2287
Length=2287
Score = 2806 bits (1519), Expect = 0.0
Identities = 1723/1816 (95%), Gaps = 36/1816 (2%)
Strand=Plus/Plus
Query 71 GGGGAATGCAGAGAACGTTTTGCTGCGAGGTGGAGAACGGTTGGAAGGAATCCCTCTCTC 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GGGGAATGCAGAGAACGTTTTGCTGCGAGGTGGAGAACGGTTGGAAGGAATCCCTCTCTC 431
Query 131 AAGGGATTGTTATCGTA-GTCCTAAAGCAAGAACCAGGGACAAACCTTGGGATAATCTCT 189
||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||
Sbjct 432 AAGGGATTGTTATCGTAGGTCCTAAAGCAAGAACTAGGGACAAACCTTGGGATATTCTCT 491
Query 190 AATCTTTCA-CATTTGATTAGGA-A--AAATACTTAAGAAGCAGCATGACTCGGATTTTG 245
||||||||| | ||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 492 AATCTTTCATC-TTTGATTAGGACAGCAAAGACTTAAGAAGCAGCATGACTCGGATTTTG 550
Query 246 GTTCAACGAGGTTCATCAGGAAGTTCTTCCAACTCGAGCCG---------C-C--C---T 290
|||||| ||||||||||||| |||||||||||||| ||||| | | | |
Sbjct 551 GTTCAAAGAGGTTCATCAGGCAGTTCTTCCAACTCTAGCCGTCCTTCTTCCTCATCTAGT 610
Query 291 TCTTCCTCGGGAACAGAACCACAGATAAACAATACTATTCAGGTTCCTCCTGTTACTATA 350
|||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||
Sbjct 611 TCTTCCTCGGGATCAGAAACACAGATAAACAATAATATTCCGGTTCCTCCTGTTACTATA 670
Query 351 GATGAAGAAATTACGGATGAGAAACAAGACGAGGTTACTGTAGTTGAAAAAGTAGAGTGT 410
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 671 GATGAAGAAATTACGGATGAGAAACAAGAAGAGGTTACTGTAGTTGAAAAAGCAGAGTGT 730
Query 411 TCTGATGCT-AAGAATGTAGCTGTGGACA-TTAGTGAACCTGTGGATAGAGAAGATGATG 468
||||||||| ||| ||||||||||||||| | | |||||||| |||||||||||||||||
Sbjct 731 TCTGATGCTAAAG-ATGTAGCTGTGGACAGTGA-TGAACCTGCGGATAGAGAAGATGATG 788
Query 469 AAGGATTGGTAGTTTCAGAAAATGTTCATGTTGAAAGTGAAGGTATAGATTGTGATTCTC 528
|||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 789 AAGGGTTGGTAGTTGCAGAAAATGTTCATGTTCAAAGTGAAGGTATAGATTGTGATTCTC 848
Query 529 CAGTTAGTGGTGGCAGTAACCCTGATTCACCACCCGTACCAGCTCCACCACCAAAACCTT 588
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 849 CAGTTAGCGGTGGCAGTAACTCTGATTCACCACCCGTACCAGCTCCACCACCAAAACCTT 908
Query 589 CTTCGACTGTCAATCCTGGGAATAACAGATCGGTCTTGGGAAGTTTTGGCGCTTTACGAA 648
|||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 909 CTTCCACTGTCAATCCTGGTAGTAACAGATCGGTTTTGGGAAGTTTTGGCGCTTTACGAA 968
Query 649 TTGGACCAACACGAAGAGGTTCTGGGCCTCGCTCTCTTGTTTCCAGTAGGAGTTCGCCAA 708
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 969 TTGGACCAACACGAAGAGCTGCTGGGCCTCGCTCTCTTGTTTCCAGTAGGAGTTCGCCAA 1028
Query 709 CTGGATCGCATCCTTCTTCTCCAAGATCACACAGTGAGAACGAGGGCTATAACAGTTCTG 768
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1029 CTGGATCACATCCTTCTTCTCCAAGATCACACAGTGAGAACGAGGGCTATAATAGTTCTG 1088
Query 769 ATGAGCATATGCCATGCTATGTGCCCTCTCATCCTGGCTCTGGCTTGGAAAGAGAACACC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 ATGAGCATATGCCATGCTATGTGCCCTCTCATCCTGGCTCTGGCTTGGAAAGAGAACACC 1148
Query 829 AGTTTGAAGCAGAGATTAGAGATTCAAAAGGCTTTGAAATTAGGCGGATGTTGGAAGATG 888
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1149 AGTTTGAAGCAGAGATTAGATATTCAAAAGGATTTGAAATTAGGCGGATGTTGGAAGATG 1208
Query 889 GAAATTGTCTTTTTCGGGCCGTTGCAGATCAAGTATATGGGGACTCAGAGGCATATGACT 948
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GAAATTGTCTTTTTCGAGCTGTTGCAGATCAAGTATATGGGGACTCAGAGGCATATGACT 1268
Query 949 TGGCTAGACAAATGTGCATGGATTACATGGAACAAGAGAGGGATCACTTTTCTCAGTTCA 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 TGGCTAGACAAATGTGCATGGATTACATGGAACAAGAGAGGGATCACTTTTCTCAGTTCA 1328
Query 1009 TAACCGAAGGTTTTACTTCTTACTTGAAGAGGAAAAGAAGAGATAAGGTCTATGGAAACA 1068
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 TAACCGAAGGTTTTACCTCTTACTTGAAGAGGAAAAGAAGAGATAAGGTCTATGGAAACA 1388
Query 1069 ACGTAGAGATCCAAGCTTTAGCAGAAATGTATAATAGGCCAATCCACATTTACTCATATA 1128
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1389 ACGTAGAGATCCAAGCTTTAGCAGAAATGTACAATAGGCCAATCCACATTTACTCATATA 1448
Query 1129 GCACAGAGCCTATCAACATATTTCAAGGAAACTACAGCACGGATACACCTCCCATAAGAC 1188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1449 GCACAGAGCCTATCAACATATTTCAAGGAAACTACAGCACGGATACACCTCCCATAAGGC 1508
Query 1189 TGAGTTACCACCACGGGAATCATTATAATTCTTTGGTGGATCCACATCGGTTGACAGTTG 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 TGAGTTACCACCACGGGAATCATTATAATTCTTTGGTGGATCCACATCGGTTGACAGTTG 1568
Query 1249 GTGCCGGACTTGGATTTAGTAGCCTTAGTGGGAGACACGTGGACAAGGAACAGGTGAAAG 1308
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 GTGCAGGACTTGGATTTAGTAGCCTTAGTGGGAGACACGTGGACAAGGAACAGGTGAAAG 1628
Query 1309 CTGCTATAAAGGCTCAGCAAGAACATCAGATTGATAATGCGCTCTTAGCAGAAGGGAGAT 1368
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1629 CTGCTATAAAGGCTCAGCAAGAACATCAAATTGATAATGCGCTGTTAGCAGAAGGGAGAT 1688
Query 1369 TTTACTCTGACCTTGAGCTTACGGAAAAGGAAATAGAGCGGGCGGTAATGGATGCTTCCC 1428
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 1689 TTTACTCTGACCTTGAGCTTACGGAAAAGGAAATAGAGCGGTCGGTAATGGAAGCTTCTC 1748
Query 1429 GTGCTGAATATCTTATGGAATGGTCTAAGCCACGAATTGGTCCAAAGGAATCATCCACCT 1488
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 GTGCTGAGTATCTTATGGAATGGTCTAAGCCACGAATTGGTCCAAAGGAATCATCCACCT 1808
Query 1489 CGAATGCTGAGACATCATCTTCTGGAGCTA--G-ACCTTCAGGCAGTGATTCGAAACCAG 1545
|||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||
Sbjct 1809 CGAATGCTGAGACATCATCTTCTGGAGCTACAGGACCTTCAGGCAGCGATTCGAAACCAG 1868
Query 1546 -AGGAGGCAGTaaaaaaaGAAAAGACTGTGCTGAGTAGCAGCATCGAGATGGTATTGTCG 1604
|| ||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1869 CAG-AGGCAGTAAAA---GAAAAGACGGTGCTGAGCAGCAGTATCGAGATGGTATTGTCG 1924
Query 1605 ATGGGATTTAGCTACACACAGGCCATGGAAGCTTATAGCATTTTTGGGGATGACGTTGAC 1664
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 ATGGGATTTAGCTACGCACAGGCCATGGAAGCTTATAGCATTTTTGGGGATGACGTTGAC 1984
Query 1665 TCTATGGTCTGCTATGTACTTGAGACAAGCTGTGGCGGCAACAACCGACGCAAAGGCAAA 1724
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1985 TCTATGGTCTGTTATGTACTGGAGACGAGCTGTGGCGGCAACAACCGACGCAAAGGCAAA 2044
Query 1725 GCCACGGAATAGAGAATGTAACATGAGTTGCTCTGTATTAGTAGTATATGAAATACCAAT 1784
|||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||
Sbjct 2045 GCCACGGAATAGAGAATGTAACATGAATTGCTCTGTATTAATAGTATATGATATACCAAT 2104
Query 1785 TCGTATTCCTCCGACCAACGGTGGGCGATTACCCTTACCAGAATAATGAAGAATAAACTT 1844
|||||||||| | ||| |||||||||||||||||| |||||||||||| |||||||||
Sbjct 2105 TCGTATTCCT---ATCAATGGTGGGCGATTACCCTTATCAGAATAATGAAAAATAAACTT 2161
Query 1845 GTGCATTCATGACATG 1860
|||||| |||||||||
Sbjct 2162 GTGCATCCATGACATG 2177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93222412065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5